data_6WCW # _model_server_result.job_id LsX5rnyBkU1fYesVUYeEpA _model_server_result.datetime_utc '2025-07-07 21:02:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1401}' # _entry.id 6WCW # _exptl.entry_id 6WCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.507 _cell.angle_gamma 90 _cell.entry_id 6WCW _cell.length_a 60.04 _cell.length_b 45.33 _cell.length_c 186.277 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 B THR 22 1_555 D MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc2 A OG1 THR 42 B THR 40 1_555 D MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 C O1G GTP . B GTP 1401 1_555 D MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc4 C O2B GTP . B GTP 1401 1_555 D MG MG . B MG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 B SG CYS 26 A CYS 721 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 B SG CYS 29 A CYS 724 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc7 B SG CYS 52 A CYS 747 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc8 B SG CYS 55 A CYS 750 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc9 B SG CYS 131 A CYS 826 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc10 B NE2 HIS 182 A HIS 877 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc11 B SG CYS 186 A CYS 881 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc12 B SG CYS 189 A CYS 884 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc13 B SG CYS 196 A CYS 891 1_555 G ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc14 B SG CYS 199 A CYS 894 1_555 G ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc15 B SG CYS 217 A CYS 912 1_555 H ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc16 B SG CYS 220 A CYS 915 1_555 H ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc17 B ND1 HIS 225 A HIS 920 1_555 G ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc18 B SG CYS 228 A CYS 923 1_555 G ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc19 B SG CYS 234 A CYS 929 1_555 H ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6WCW _atom_sites.fract_transf_matrix[1][1] 0.016656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002491 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP B 1 1401 1401 GTP GTP . D 4 MG B 1 1402 278 MG MG . E 5 ZN A 1 1001 1426 ZN ZN . F 5 ZN A 1 1002 1437 ZN ZN . G 5 ZN A 1 1003 1448 ZN ZN . H 5 ZN A 1 1004 1459 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 11.125 23.326 28.321 1 50.85 ? PG GTP 1401 B 1 HETATM 2 O O1G GTP . . . C 3 11.805 24.677 28.61 1 50.89 ? O1G GTP 1401 B 1 HETATM 3 O O2G GTP . . . C 3 9.802 23.505 27.603 1 50.14 ? O2G GTP 1401 B 1 HETATM 4 O O3G GTP . . . C 3 10.841 22.527 29.564 1 51.39 ? O3G GTP 1401 B 1 HETATM 5 O O3B GTP . . . C 3 12.083 22.426 27.402 1 48.34 ? O3B GTP 1401 B 1 HETATM 6 P PB GTP . . . C 3 13.088 23.184 26.411 1 42.08 ? PB GTP 1401 B 1 HETATM 7 O O1B GTP . . . C 3 13.01 22.427 25.104 1 34.78 ? O1B GTP 1401 B 1 HETATM 8 O O2B GTP . . . C 3 12.735 24.657 26.3 1 42.04 ? O2B GTP 1401 B 1 HETATM 9 O O3A GTP . . . C 3 14.462 22.935 27.184 1 45.06 ? O3A GTP 1401 B 1 HETATM 10 P PA GTP . . . C 3 15.895 23.459 26.689 1 47.17 ? PA GTP 1401 B 1 HETATM 11 O O1A GTP . . . C 3 15.753 24.304 25.452 1 42.16 ? O1A GTP 1401 B 1 HETATM 12 O O2A GTP . . . C 3 16.454 24.299 27.828 1 43.45 ? O2A GTP 1401 B 1 HETATM 13 O O5' GTP . . . C 3 16.739 22.1 26.395 1 47.56 ? O5' GTP 1401 B 1 HETATM 14 C C5' GTP . . . C 3 17.074 21.134 27.397 1 46.85 ? C5' GTP 1401 B 1 HETATM 15 C C4' GTP . . . C 3 18.589 20.913 27.573 1 41.5 ? C4' GTP 1401 B 1 HETATM 16 O O4' GTP . . . C 3 19.158 20.428 26.365 1 42.7 ? O4' GTP 1401 B 1 HETATM 17 C C3' GTP . . . C 3 19.327 22.198 27.924 1 44.15 ? C3' GTP 1401 B 1 HETATM 18 O O3' GTP . . . C 3 20.325 21.924 28.875 1 47.36 ? O3' GTP 1401 B 1 HETATM 19 C C2' GTP . . . C 3 20.018 22.585 26.643 1 45.19 ? C2' GTP 1401 B 1 HETATM 20 O O2' GTP . . . C 3 21.172 23.338 26.923 1 45.72 ? O2' GTP 1401 B 1 HETATM 21 C C1' GTP . . . C 3 20.264 21.235 25.973 1 45.81 ? C1' GTP 1401 B 1 HETATM 22 N N9 GTP . . . C 3 20.268 21.42 24.518 1 42.91 ? N9 GTP 1401 B 1 HETATM 23 C C8 GTP . . . C 3 19.316 22.111 23.822 1 43.5 ? C8 GTP 1401 B 1 HETATM 24 N N7 GTP . . . C 3 19.623 22.095 22.511 1 43.24 ? N7 GTP 1401 B 1 HETATM 25 C C5 GTP . . . C 3 20.775 21.39 22.354 1 49.67 ? C5 GTP 1401 B 1 HETATM 26 C C6 GTP . . . C 3 21.54 21.061 21.228 1 53.34 ? C6 GTP 1401 B 1 HETATM 27 O O6 GTP . . . C 3 21.209 21.42 20.097 1 56.43 ? O6 GTP 1401 B 1 HETATM 28 N N1 GTP . . . C 3 22.688 20.32 21.369 1 52.33 ? N1 GTP 1401 B 1 HETATM 29 C C2 GTP . . . C 3 23.082 19.904 22.619 1 50.83 ? C2 GTP 1401 B 1 HETATM 30 N N2 GTP . . . C 3 24.196 19.188 22.729 1 48.69 ? N2 GTP 1401 B 1 HETATM 31 N N3 GTP . . . C 3 22.326 20.228 23.735 1 52.05 ? N3 GTP 1401 B 1 HETATM 32 C C4 GTP . . . C 3 21.191 20.962 23.612 1 48.15 ? C4 GTP 1401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #