data_6WDV # _model_server_result.job_id 53REjoktNY5nqFBg9HAmvg _model_server_result.datetime_utc '2024-11-24 18:27:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6WDV # _exptl.entry_id 6WDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WDV _cell.length_a 80.67 _cell.length_b 80.67 _cell.length_c 246.842 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 543 A CYS 543 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc1 A O ASP 172 A ASP 172 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 A OD2 ASP 174 A ASP 174 1_555 E ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc4 A O ASP 174 A ASP 174 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc5 A ND1 HIS 176 A HIS 176 1_555 E ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 A O HIS 176 A HIS 176 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.406 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 E ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc14 B N02 TWM . A TWM 701 1_555 E ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc15 B O01 TWM . A TWM 701 1_555 E ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc16 B O24 TWM . A TWM 701 1_555 E ZN ZN . A ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc17 G K K . A K 706 1_555 H O HOH . A HOH 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc18 G K K . A K 706 1_555 H O HOH . A HOH 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WDV _atom_sites.fract_transf_matrix[1][1] 0.012396 _atom_sites.fract_transf_matrix[1][2] 0.007157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TWM A 1 701 701 TWM LIG . C 3 PO4 A 1 702 1 PO4 PO4 . D 3 PO4 A 1 703 2 PO4 PO4 . E 4 ZN A 1 704 1 ZN ZN . F 5 K A 1 705 1 K K . G 5 K A 1 706 2 K K . H 6 HOH A 1 801 146 HOH HOH . H 6 HOH A 2 802 25 HOH HOH . H 6 HOH A 3 803 101 HOH HOH . H 6 HOH A 4 804 168 HOH HOH . H 6 HOH A 5 805 177 HOH HOH . H 6 HOH A 6 806 90 HOH HOH . H 6 HOH A 7 807 71 HOH HOH . H 6 HOH A 8 808 113 HOH HOH . H 6 HOH A 9 809 170 HOH HOH . H 6 HOH A 10 810 17 HOH HOH . H 6 HOH A 11 811 31 HOH HOH . H 6 HOH A 12 812 70 HOH HOH . H 6 HOH A 13 813 137 HOH HOH . H 6 HOH A 14 814 23 HOH HOH . H 6 HOH A 15 815 154 HOH HOH . H 6 HOH A 16 816 131 HOH HOH . H 6 HOH A 17 817 183 HOH HOH . H 6 HOH A 18 818 24 HOH HOH . H 6 HOH A 19 819 8 HOH HOH . H 6 HOH A 20 820 3 HOH HOH . H 6 HOH A 21 821 149 HOH HOH . H 6 HOH A 22 822 107 HOH HOH . H 6 HOH A 23 823 87 HOH HOH . H 6 HOH A 24 824 91 HOH HOH . H 6 HOH A 25 825 12 HOH HOH . H 6 HOH A 26 826 158 HOH HOH . H 6 HOH A 27 827 50 HOH HOH . H 6 HOH A 28 828 117 HOH HOH . H 6 HOH A 29 829 29 HOH HOH . H 6 HOH A 30 830 20 HOH HOH . H 6 HOH A 31 831 51 HOH HOH . H 6 HOH A 32 832 35 HOH HOH . H 6 HOH A 33 833 160 HOH HOH . H 6 HOH A 34 834 33 HOH HOH . H 6 HOH A 35 835 10 HOH HOH . H 6 HOH A 36 836 140 HOH HOH . H 6 HOH A 37 837 118 HOH HOH . H 6 HOH A 38 838 178 HOH HOH . H 6 HOH A 39 839 28 HOH HOH . H 6 HOH A 40 840 7 HOH HOH . H 6 HOH A 41 841 166 HOH HOH . H 6 HOH A 42 842 145 HOH HOH . H 6 HOH A 43 843 5 HOH HOH . H 6 HOH A 44 844 121 HOH HOH . H 6 HOH A 45 845 64 HOH HOH . H 6 HOH A 46 846 52 HOH HOH . H 6 HOH A 47 847 14 HOH HOH . H 6 HOH A 48 848 89 HOH HOH . H 6 HOH A 49 849 58 HOH HOH . H 6 HOH A 50 850 37 HOH HOH . H 6 HOH A 51 851 1 HOH HOH . H 6 HOH A 52 852 161 HOH HOH . H 6 HOH A 53 853 6 HOH HOH . H 6 HOH A 54 854 85 HOH HOH . H 6 HOH A 55 855 79 HOH HOH . H 6 HOH A 56 856 122 HOH HOH . H 6 HOH A 57 857 174 HOH HOH . H 6 HOH A 58 858 175 HOH HOH . H 6 HOH A 59 859 45 HOH HOH . H 6 HOH A 60 860 152 HOH HOH . H 6 HOH A 61 861 42 HOH HOH . H 6 HOH A 62 862 26 HOH HOH . H 6 HOH A 63 863 155 HOH HOH . H 6 HOH A 64 864 123 HOH HOH . H 6 HOH A 65 865 96 HOH HOH . H 6 HOH A 66 866 22 HOH HOH . H 6 HOH A 67 867 44 HOH HOH . H 6 HOH A 68 868 156 HOH HOH . H 6 HOH A 69 869 2 HOH HOH . H 6 HOH A 70 870 82 HOH HOH . H 6 HOH A 71 871 49 HOH HOH . H 6 HOH A 72 872 164 HOH HOH . H 6 HOH A 73 873 74 HOH HOH . H 6 HOH A 74 874 34 HOH HOH . H 6 HOH A 75 875 104 HOH HOH . H 6 HOH A 76 876 135 HOH HOH . H 6 HOH A 77 877 9 HOH HOH . H 6 HOH A 78 878 129 HOH HOH . H 6 HOH A 79 879 176 HOH HOH . H 6 HOH A 80 880 36 HOH HOH . H 6 HOH A 81 881 4 HOH HOH . H 6 HOH A 82 882 138 HOH HOH . H 6 HOH A 83 883 38 HOH HOH . H 6 HOH A 84 884 182 HOH HOH . H 6 HOH A 85 885 86 HOH HOH . H 6 HOH A 86 886 43 HOH HOH . H 6 HOH A 87 887 73 HOH HOH . H 6 HOH A 88 888 144 HOH HOH . H 6 HOH A 89 889 67 HOH HOH . H 6 HOH A 90 890 21 HOH HOH . H 6 HOH A 91 891 119 HOH HOH . H 6 HOH A 92 892 61 HOH HOH . H 6 HOH A 93 893 13 HOH HOH . H 6 HOH A 94 894 15 HOH HOH . H 6 HOH A 95 895 18 HOH HOH . H 6 HOH A 96 896 80 HOH HOH . H 6 HOH A 97 897 150 HOH HOH . H 6 HOH A 98 898 111 HOH HOH . H 6 HOH A 99 899 169 HOH HOH . H 6 HOH A 100 900 41 HOH HOH . H 6 HOH A 101 901 62 HOH HOH . H 6 HOH A 102 902 124 HOH HOH . H 6 HOH A 103 903 173 HOH HOH . H 6 HOH A 104 904 102 HOH HOH . H 6 HOH A 105 905 76 HOH HOH . H 6 HOH A 106 906 133 HOH HOH . H 6 HOH A 107 907 92 HOH HOH . H 6 HOH A 108 908 171 HOH HOH . H 6 HOH A 109 909 47 HOH HOH . H 6 HOH A 110 910 57 HOH HOH . H 6 HOH A 111 911 165 HOH HOH . H 6 HOH A 112 912 77 HOH HOH . H 6 HOH A 113 913 39 HOH HOH . H 6 HOH A 114 914 162 HOH HOH . H 6 HOH A 115 915 93 HOH HOH . H 6 HOH A 116 916 132 HOH HOH . H 6 HOH A 117 917 19 HOH HOH . H 6 HOH A 118 918 40 HOH HOH . H 6 HOH A 119 919 65 HOH HOH . H 6 HOH A 120 920 11 HOH HOH . H 6 HOH A 121 921 53 HOH HOH . H 6 HOH A 122 922 120 HOH HOH . H 6 HOH A 123 923 172 HOH HOH . H 6 HOH A 124 924 112 HOH HOH . H 6 HOH A 125 925 134 HOH HOH . H 6 HOH A 126 926 59 HOH HOH . H 6 HOH A 127 927 99 HOH HOH . H 6 HOH A 128 928 75 HOH HOH . H 6 HOH A 129 929 63 HOH HOH . H 6 HOH A 130 930 147 HOH HOH . H 6 HOH A 131 931 163 HOH HOH . H 6 HOH A 132 932 54 HOH HOH . H 6 HOH A 133 933 180 HOH HOH . H 6 HOH A 134 934 68 HOH HOH . H 6 HOH A 135 935 55 HOH HOH . H 6 HOH A 136 936 72 HOH HOH . H 6 HOH A 137 937 139 HOH HOH . H 6 HOH A 138 938 27 HOH HOH . H 6 HOH A 139 939 105 HOH HOH . H 6 HOH A 140 940 81 HOH HOH . H 6 HOH A 141 941 127 HOH HOH . H 6 HOH A 142 942 116 HOH HOH . H 6 HOH A 143 943 100 HOH HOH . H 6 HOH A 144 944 30 HOH HOH . H 6 HOH A 145 945 84 HOH HOH . H 6 HOH A 146 946 141 HOH HOH . H 6 HOH A 147 947 16 HOH HOH . H 6 HOH A 148 948 110 HOH HOH . H 6 HOH A 149 949 83 HOH HOH . H 6 HOH A 150 950 94 HOH HOH . H 6 HOH A 151 951 179 HOH HOH . H 6 HOH A 152 952 46 HOH HOH . H 6 HOH A 153 953 95 HOH HOH . H 6 HOH A 154 954 181 HOH HOH . H 6 HOH A 155 955 136 HOH HOH . H 6 HOH A 156 956 159 HOH HOH . H 6 HOH A 157 957 66 HOH HOH . H 6 HOH A 158 958 48 HOH HOH . H 6 HOH A 159 959 97 HOH HOH . H 6 HOH A 160 960 108 HOH HOH . H 6 HOH A 161 961 184 HOH HOH . H 6 HOH A 162 962 126 HOH HOH . H 6 HOH A 163 963 167 HOH HOH . H 6 HOH A 164 964 98 HOH HOH . H 6 HOH A 165 965 103 HOH HOH . H 6 HOH A 166 966 142 HOH HOH . H 6 HOH A 167 967 125 HOH HOH . H 6 HOH A 168 968 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.647 _atom_site.Cartn_y 38.906 _atom_site.Cartn_z 32.179 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 704 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #