data_6WDX # _model_server_result.job_id GDhKbC6JTxbal616UPLDDg _model_server_result.datetime_utc '2024-11-24 19:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6WDX # _exptl.entry_id 6WDX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.347 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-hydroxy-4-{[3-(2-hydroxyethyl)-1H-indol-1-yl]methyl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WDX _cell.length_a 80.44 _cell.length_b 80.44 _cell.length_c 243.891 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 543 A CYS 543 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc1 A O ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc3 A OD2 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 A O ASP 174 A ASP 174 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc5 A ND1 HIS 176 A HIS 176 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 A O HIS 176 A HIS 176 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc14 B N16 TWS . A TWS 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc15 B O15 TWS . A TWS 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc16 B O17 TWS . A TWS 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc17 H K K . A K 707 1_555 I O HOH . A HOH 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc18 H K K . A K 707 1_555 I O HOH . A HOH 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? # _chem_comp.formula 'C18 H18 N2 O3' _chem_comp.formula_weight 310.347 _chem_comp.id TWS _chem_comp.mon_nstd_flag . _chem_comp.name N-hydroxy-4-{[3-(2-hydroxyethyl)-1H-indol-1-yl]methyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 TWS sing 338 n n C02 C03 TWS sing 339 n n C20 C21 TWS doub 340 n y C20 C19 TWS sing 341 n y C21 C22 TWS sing 342 n y C03 C04 TWS sing 343 n n C19 C04 TWS sing 344 n y C19 C18 TWS doub 345 n y C04 C05 TWS doub 346 n y C22 C23 TWS doub 347 n y O15 C14 TWS doub 348 n n C10 C09 TWS doub 349 n y C10 C11 TWS sing 350 n y C18 C23 TWS sing 351 n y C18 N06 TWS sing 352 n y C09 C08 TWS sing 353 n y C05 N06 TWS sing 354 n y C14 C11 TWS sing 355 n n C14 N16 TWS sing 356 n n C11 C12 TWS doub 357 n y N06 C07 TWS sing 358 n n O17 N16 TWS sing 359 n n C08 C07 TWS sing 360 n n C08 C13 TWS doub 361 n y C12 C13 TWS sing 362 n y C10 H1 TWS sing 363 n n C13 H2 TWS sing 364 n n C20 H3 TWS sing 365 n n C21 H4 TWS sing 366 n n C22 H5 TWS sing 367 n n C02 H6 TWS sing 368 n n C02 H7 TWS sing 369 n n C03 H8 TWS sing 370 n n C03 H9 TWS sing 371 n n C05 H10 TWS sing 372 n n C07 H11 TWS sing 373 n n C07 H12 TWS sing 374 n n C09 H13 TWS sing 375 n n C12 H14 TWS sing 376 n n C23 H15 TWS sing 377 n n N16 H16 TWS sing 378 n n O01 H17 TWS sing 379 n n O17 H18 TWS sing 380 n n # _atom_sites.entry_id 6WDX _atom_sites.fract_transf_matrix[1][1] 0.012432 _atom_sites.fract_transf_matrix[1][2] 0.007177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TWS A 1 701 701 TWS LIG . C 3 ZN A 1 702 1 ZN ZN . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 4 PO4 A 1 705 3 PO4 PO4 . G 5 K A 1 706 1 K K . H 5 K A 1 707 2 K K . I 6 HOH A 1 801 76 HOH HOH . I 6 HOH A 2 802 98 HOH HOH . I 6 HOH A 3 803 42 HOH HOH . I 6 HOH A 4 804 35 HOH HOH . I 6 HOH A 5 805 106 HOH HOH . I 6 HOH A 6 806 97 HOH HOH . I 6 HOH A 7 807 95 HOH HOH . I 6 HOH A 8 808 64 HOH HOH . I 6 HOH A 9 809 99 HOH HOH . I 6 HOH A 10 810 85 HOH HOH . I 6 HOH A 11 811 13 HOH HOH . I 6 HOH A 12 812 12 HOH HOH . I 6 HOH A 13 813 83 HOH HOH . I 6 HOH A 14 814 82 HOH HOH . I 6 HOH A 15 815 70 HOH HOH . I 6 HOH A 16 816 39 HOH HOH . I 6 HOH A 17 817 84 HOH HOH . I 6 HOH A 18 818 22 HOH HOH . I 6 HOH A 19 819 43 HOH HOH . I 6 HOH A 20 820 88 HOH HOH . I 6 HOH A 21 821 96 HOH HOH . I 6 HOH A 22 822 61 HOH HOH . I 6 HOH A 23 823 55 HOH HOH . I 6 HOH A 24 824 92 HOH HOH . I 6 HOH A 25 825 10 HOH HOH . I 6 HOH A 26 826 27 HOH HOH . I 6 HOH A 27 827 104 HOH HOH . I 6 HOH A 28 828 15 HOH HOH . I 6 HOH A 29 829 105 HOH HOH . I 6 HOH A 30 830 26 HOH HOH . I 6 HOH A 31 831 11 HOH HOH . I 6 HOH A 32 832 33 HOH HOH . I 6 HOH A 33 833 90 HOH HOH . I 6 HOH A 34 834 2 HOH HOH . I 6 HOH A 35 835 49 HOH HOH . I 6 HOH A 36 836 87 HOH HOH . I 6 HOH A 37 837 62 HOH HOH . I 6 HOH A 38 838 24 HOH HOH . I 6 HOH A 39 839 21 HOH HOH . I 6 HOH A 40 840 20 HOH HOH . I 6 HOH A 41 841 101 HOH HOH . I 6 HOH A 42 842 44 HOH HOH . I 6 HOH A 43 843 102 HOH HOH . I 6 HOH A 44 844 77 HOH HOH . I 6 HOH A 45 845 14 HOH HOH . I 6 HOH A 46 846 69 HOH HOH . I 6 HOH A 47 847 9 HOH HOH . I 6 HOH A 48 848 6 HOH HOH . I 6 HOH A 49 849 31 HOH HOH . I 6 HOH A 50 850 1 HOH HOH . I 6 HOH A 51 851 107 HOH HOH . I 6 HOH A 52 852 5 HOH HOH . I 6 HOH A 53 853 34 HOH HOH . I 6 HOH A 54 854 93 HOH HOH . I 6 HOH A 55 855 59 HOH HOH . I 6 HOH A 56 856 109 HOH HOH . I 6 HOH A 57 857 54 HOH HOH . I 6 HOH A 58 858 91 HOH HOH . I 6 HOH A 59 859 46 HOH HOH . I 6 HOH A 60 860 94 HOH HOH . I 6 HOH A 61 861 18 HOH HOH . I 6 HOH A 62 862 89 HOH HOH . I 6 HOH A 63 863 45 HOH HOH . I 6 HOH A 64 864 25 HOH HOH . I 6 HOH A 65 865 86 HOH HOH . I 6 HOH A 66 866 67 HOH HOH . I 6 HOH A 67 867 100 HOH HOH . I 6 HOH A 68 868 23 HOH HOH . I 6 HOH A 69 869 29 HOH HOH . I 6 HOH A 70 870 19 HOH HOH . I 6 HOH A 71 871 40 HOH HOH . I 6 HOH A 72 872 3 HOH HOH . I 6 HOH A 73 873 47 HOH HOH . I 6 HOH A 74 874 37 HOH HOH . I 6 HOH A 75 875 17 HOH HOH . I 6 HOH A 76 876 66 HOH HOH . I 6 HOH A 77 877 108 HOH HOH . I 6 HOH A 78 878 58 HOH HOH . I 6 HOH A 79 879 103 HOH HOH . I 6 HOH A 80 880 78 HOH HOH . I 6 HOH A 81 881 50 HOH HOH . I 6 HOH A 82 882 53 HOH HOH . I 6 HOH A 83 883 73 HOH HOH . I 6 HOH A 84 884 79 HOH HOH . I 6 HOH A 85 885 80 HOH HOH . I 6 HOH A 86 886 72 HOH HOH . I 6 HOH A 87 887 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 TWS . . . B 2 63.961 109.707 276.427 1 56.56 ? C10 TWS 701 A 1 HETATM 2 C C13 TWS . . . B 2 64.688 109.246 279.081 1 49.56 ? C13 TWS 701 A 1 HETATM 3 C C20 TWS . . . B 2 70.121 108.248 274.711 1 75.87 ? C20 TWS 701 A 1 HETATM 4 C C21 TWS . . . B 2 70.015 106.827 274.806 1 70.66 ? C21 TWS 701 A 1 HETATM 5 C C22 TWS . . . B 2 69.225 106.273 275.828 1 62.32 ? C22 TWS 701 A 1 HETATM 6 C C02 TWS . . . B 2 70.29 111.297 273.435 1 80.8 ? C02 TWS 701 A 1 HETATM 7 C C03 TWS . . . B 2 70.044 111.603 274.945 1 77.28 ? C03 TWS 701 A 1 HETATM 8 C C04 TWS . . . B 2 69.358 110.506 275.791 1 72.05 ? C04 TWS 701 A 1 HETATM 9 C C05 TWS . . . B 2 68.52 110.757 276.905 1 70.53 ? C05 TWS 701 A 1 HETATM 10 C C07 TWS . . . B 2 67.199 109.543 278.565 1 54.15 ? C07 TWS 701 A 1 HETATM 11 C C08 TWS . . . B 2 65.7 109.51 278.138 1 54.28 ? C08 TWS 701 A 1 HETATM 12 C C09 TWS . . . B 2 65.302 109.749 276.785 1 56.54 ? C09 TWS 701 A 1 HETATM 13 C C11 TWS . . . B 2 62.951 109.429 277.369 1 48.64 ? C11 TWS 701 A 1 HETATM 14 C C12 TWS . . . B 2 63.359 109.204 278.731 1 42.85 ? C12 TWS 701 A 1 HETATM 15 C C14 TWS . . . B 2 61.4 109.353 276.958 1 51.03 ? C14 TWS 701 A 1 HETATM 16 C C18 TWS . . . B 2 68.65 108.572 276.653 1 76.23 ? C18 TWS 701 A 1 HETATM 17 C C19 TWS . . . B 2 69.435 109.113 275.638 1 78 ? C19 TWS 701 A 1 HETATM 18 C C23 TWS . . . B 2 68.552 107.116 276.742 1 65.74 ? C23 TWS 701 A 1 HETATM 19 N N06 TWS . . . B 2 68.098 109.622 277.411 1 73.02 ? N06 TWS 701 A 1 HETATM 20 N N16 TWS . . . B 2 60.457 108.558 277.785 1 52.67 ? N16 TWS 701 A 1 HETATM 21 O O01 TWS . . . B 2 69.586 112.256 272.623 1 81.61 ? O01 TWS 701 A 1 HETATM 22 O O15 TWS . . . B 2 60.99 109.867 276.005 1 49.85 ? O15 TWS 701 A 1 HETATM 23 O O17 TWS . . . B 2 59.071 108.422 277.494 1 49.96 ? O17 TWS 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #