data_6WDX # _model_server_result.job_id 7YPnaDePGb_7SYM5NcugvA _model_server_result.datetime_utc '2024-11-28 12:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 6WDX # _exptl.entry_id 6WDX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WDX _cell.length_a 80.44 _cell.length_b 80.44 _cell.length_c 243.891 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 543 A CYS 543 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc1 A O ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc3 A OD2 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 A O ASP 174 A ASP 174 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc5 A ND1 HIS 176 A HIS 176 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 A O HIS 176 A HIS 176 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc14 B N16 TWS . A TWS 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc15 B O15 TWS . A TWS 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc16 B O17 TWS . A TWS 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc17 H K K . A K 707 1_555 I O HOH . A HOH 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc18 H K K . A K 707 1_555 I O HOH . A HOH 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 6WDX _atom_sites.fract_transf_matrix[1][1] 0.012432 _atom_sites.fract_transf_matrix[1][2] 0.007177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TWS A 1 701 701 TWS LIG . C 3 ZN A 1 702 1 ZN ZN . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 4 PO4 A 1 705 3 PO4 PO4 . G 5 K A 1 706 1 K K . H 5 K A 1 707 2 K K . I 6 HOH A 1 801 76 HOH HOH . I 6 HOH A 2 802 98 HOH HOH . I 6 HOH A 3 803 42 HOH HOH . I 6 HOH A 4 804 35 HOH HOH . I 6 HOH A 5 805 106 HOH HOH . I 6 HOH A 6 806 97 HOH HOH . I 6 HOH A 7 807 95 HOH HOH . I 6 HOH A 8 808 64 HOH HOH . I 6 HOH A 9 809 99 HOH HOH . I 6 HOH A 10 810 85 HOH HOH . I 6 HOH A 11 811 13 HOH HOH . I 6 HOH A 12 812 12 HOH HOH . I 6 HOH A 13 813 83 HOH HOH . I 6 HOH A 14 814 82 HOH HOH . I 6 HOH A 15 815 70 HOH HOH . I 6 HOH A 16 816 39 HOH HOH . I 6 HOH A 17 817 84 HOH HOH . I 6 HOH A 18 818 22 HOH HOH . I 6 HOH A 19 819 43 HOH HOH . I 6 HOH A 20 820 88 HOH HOH . I 6 HOH A 21 821 96 HOH HOH . I 6 HOH A 22 822 61 HOH HOH . I 6 HOH A 23 823 55 HOH HOH . I 6 HOH A 24 824 92 HOH HOH . I 6 HOH A 25 825 10 HOH HOH . I 6 HOH A 26 826 27 HOH HOH . I 6 HOH A 27 827 104 HOH HOH . I 6 HOH A 28 828 15 HOH HOH . I 6 HOH A 29 829 105 HOH HOH . I 6 HOH A 30 830 26 HOH HOH . I 6 HOH A 31 831 11 HOH HOH . I 6 HOH A 32 832 33 HOH HOH . I 6 HOH A 33 833 90 HOH HOH . I 6 HOH A 34 834 2 HOH HOH . I 6 HOH A 35 835 49 HOH HOH . I 6 HOH A 36 836 87 HOH HOH . I 6 HOH A 37 837 62 HOH HOH . I 6 HOH A 38 838 24 HOH HOH . I 6 HOH A 39 839 21 HOH HOH . I 6 HOH A 40 840 20 HOH HOH . I 6 HOH A 41 841 101 HOH HOH . I 6 HOH A 42 842 44 HOH HOH . I 6 HOH A 43 843 102 HOH HOH . I 6 HOH A 44 844 77 HOH HOH . I 6 HOH A 45 845 14 HOH HOH . I 6 HOH A 46 846 69 HOH HOH . I 6 HOH A 47 847 9 HOH HOH . I 6 HOH A 48 848 6 HOH HOH . I 6 HOH A 49 849 31 HOH HOH . I 6 HOH A 50 850 1 HOH HOH . I 6 HOH A 51 851 107 HOH HOH . I 6 HOH A 52 852 5 HOH HOH . I 6 HOH A 53 853 34 HOH HOH . I 6 HOH A 54 854 93 HOH HOH . I 6 HOH A 55 855 59 HOH HOH . I 6 HOH A 56 856 109 HOH HOH . I 6 HOH A 57 857 54 HOH HOH . I 6 HOH A 58 858 91 HOH HOH . I 6 HOH A 59 859 46 HOH HOH . I 6 HOH A 60 860 94 HOH HOH . I 6 HOH A 61 861 18 HOH HOH . I 6 HOH A 62 862 89 HOH HOH . I 6 HOH A 63 863 45 HOH HOH . I 6 HOH A 64 864 25 HOH HOH . I 6 HOH A 65 865 86 HOH HOH . I 6 HOH A 66 866 67 HOH HOH . I 6 HOH A 67 867 100 HOH HOH . I 6 HOH A 68 868 23 HOH HOH . I 6 HOH A 69 869 29 HOH HOH . I 6 HOH A 70 870 19 HOH HOH . I 6 HOH A 71 871 40 HOH HOH . I 6 HOH A 72 872 3 HOH HOH . I 6 HOH A 73 873 47 HOH HOH . I 6 HOH A 74 874 37 HOH HOH . I 6 HOH A 75 875 17 HOH HOH . I 6 HOH A 76 876 66 HOH HOH . I 6 HOH A 77 877 108 HOH HOH . I 6 HOH A 78 878 58 HOH HOH . I 6 HOH A 79 879 103 HOH HOH . I 6 HOH A 80 880 78 HOH HOH . I 6 HOH A 81 881 50 HOH HOH . I 6 HOH A 82 882 53 HOH HOH . I 6 HOH A 83 883 73 HOH HOH . I 6 HOH A 84 884 79 HOH HOH . I 6 HOH A 85 885 80 HOH HOH . I 6 HOH A 86 886 72 HOH HOH . I 6 HOH A 87 887 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 65.512 89.209 275.551 1 41.64 ? P PO4 703 A 1 HETATM 2 O O1 PO4 . . . D 4 65.322 88.125 274.508 1 41.71 ? O1 PO4 703 A 1 HETATM 3 O O2 PO4 . . . D 4 64.383 90.208 275.356 1 47.8 ? O2 PO4 703 A 1 HETATM 4 O O3 PO4 . . . D 4 65.462 88.586 276.923 1 37.66 ? O3 PO4 703 A 1 HETATM 5 O O4 PO4 . . . D 4 66.869 89.886 275.444 1 37.41 ? O4 PO4 703 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #