data_6WEP
#
_model_server_result.job_id            W-gowlWZCzeymJfEfhYqzQ 
_model_server_result.datetime_utc      '2024-10-19 11:44:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wep 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    6WEP 
#
_exptl.entry_id    6WEP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WEP 
_cell.length_a            76.822 
_cell.length_b            118.114 
_cell.length_c            153.048 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WEP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     6WEP 
_atom_sites.fract_transf_matrix[1][1]    0.013017 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008466 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 601 601 NDP NDP . 
D 3 MTX A 1 602 602 MTX MTX . 
E 2 NDP B 1 601 601 NDP NDP . 
F 3 MTX B 1 602 602 MTX MTX . 
G 4 HOH A 1 701 13 HOH HOH . 
G 4 HOH A 2 702 4 HOH HOH . 
G 4 HOH A 3 703 2 HOH HOH . 
G 4 HOH A 4 704 16 HOH HOH . 
G 4 HOH A 5 705 7 HOH HOH . 
G 4 HOH A 6 706 17 HOH HOH . 
G 4 HOH A 7 707 10 HOH HOH . 
G 4 HOH A 8 708 1 HOH HOH . 
G 4 HOH A 9 709 14 HOH HOH . 
H 4 HOH B 1 701 12 HOH HOH . 
H 4 HOH B 2 702 5 HOH HOH . 
H 4 HOH B 3 703 3 HOH HOH . 
H 4 HOH B 4 704 6 HOH HOH . 
H 4 HOH B 5 705 9 HOH HOH . 
H 4 HOH B 6 706 11 HOH HOH . 
H 4 HOH B 7 707 15 HOH HOH . 
H 4 HOH B 8 708 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . F 3 13.256 14.078 68.82 1 51.43 ? N1 MTX 602 B 1 
HETATM 2 C C2 MTX . . . F 3 13.915 13.93 67.657 1 54.43 ? C2 MTX 602 B 1 
HETATM 3 N NA2 MTX . . . F 3 13.269 13.236 66.571 1 56.28 ? NA2 MTX 602 B 1 
HETATM 4 N N3 MTX . . . F 3 15.156 14.407 67.475 1 54.24 ? N3 MTX 602 B 1 
HETATM 5 C C4 MTX . . . F 3 15.791 15.061 68.469 1 55.38 ? C4 MTX 602 B 1 
HETATM 6 N NA4 MTX . . . F 3 17.111 15.579 68.299 1 55.59 ? NA4 MTX 602 B 1 
HETATM 7 C C4A MTX . . . F 3 15.139 15.242 69.706 1 54.67 ? C4A MTX 602 B 1 
HETATM 8 N N5 MTX . . . F 3 15.75 15.898 70.732 1 60.89 ? N5 MTX 602 B 1 
HETATM 9 C C6 MTX . . . F 3 15.081 16.054 71.895 1 65.85 ? C6 MTX 602 B 1 
HETATM 10 C C7 MTX . . . F 3 13.79 15.548 72.086 1 59.89 ? C7 MTX 602 B 1 
HETATM 11 N N8 MTX . . . F 3 13.201 14.902 71.055 1 60.4 ? N8 MTX 602 B 1 
HETATM 12 C C8A MTX . . . F 3 13.861 14.738 69.859 1 57.25 ? C8A MTX 602 B 1 
HETATM 13 C C9 MTX . . . F 3 15.789 16.772 73.011 1 57.41 ? C9 MTX 602 B 1 
HETATM 14 N N10 MTX . . . F 3 16.899 15.971 73.467 1 63.3 ? N10 MTX 602 B 1 
HETATM 15 C CM MTX . . . F 3 18.25 16.36 73.143 1 62.58 ? CM MTX 602 B 1 
HETATM 16 C C11 MTX . . . F 3 16.065 12.349 75.512 1 65.12 ? C11 MTX 602 B 1 
HETATM 17 C C12 MTX . . . F 3 15.306 13.487 75.785 1 56.82 ? C12 MTX 602 B 1 
HETATM 18 C C13 MTX . . . F 3 15.583 14.68 75.115 1 57.47 ? C13 MTX 602 B 1 
HETATM 19 C C14 MTX . . . F 3 16.614 14.736 74.181 1 61.46 ? C14 MTX 602 B 1 
HETATM 20 C C15 MTX . . . F 3 17.364 13.599 73.907 1 58.75 ? C15 MTX 602 B 1 
HETATM 21 C C16 MTX . . . F 3 17.087 12.411 74.575 1 65.11 ? C16 MTX 602 B 1 
HETATM 22 C C MTX . . . F 3 15.812 11.029 76.201 1 64.59 ? C MTX 602 B 1 
HETATM 23 O O MTX . . . F 3 15.128 10.981 77.21 1 65.28 ? O MTX 602 B 1 
HETATM 24 N N MTX . . . F 3 16.377 9.815 75.65 1 63.53 ? N MTX 602 B 1 
HETATM 25 C CA MTX . . . F 3 16.167 8.537 76.279 1 76.66 ? CA MTX 602 B 1 
HETATM 26 C CT MTX . . . F 3 17.313 7.673 75.919 1 79.29 ? CT MTX 602 B 1 
HETATM 27 O O1 MTX . . . F 3 17.981 7.941 74.885 1 64.52 ? O1 MTX 602 B 1 
HETATM 28 O O2 MTX . . . F 3 17.616 6.668 76.634 1 85.86 ? O2 MTX 602 B 1 
HETATM 29 C CB MTX . . . F 3 14.933 7.906 75.731 1 71.14 ? CB MTX 602 B 1 
HETATM 30 C CG MTX . . . F 3 14.07 7.082 76.638 1 72.41 ? CG MTX 602 B 1 
HETATM 31 C CD MTX . . . F 3 13.096 6.152 75.983 1 83.12 ? CD MTX 602 B 1 
HETATM 32 O OE1 MTX . . . F 3 13.524 5.11 75.433 1 83.96 ? OE1 MTX 602 B 1 
HETATM 33 O OE2 MTX . . . F 3 11.927 6.551 75.729 1 76.29 ? OE2 MTX 602 B 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           117 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#