data_6WEQ
#
_model_server_result.job_id            P_LFAzBXq12qFBaoBiaNZA 
_model_server_result.datetime_utc      '2025-06-23 09:48:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6weq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":401}' 
#
_entry.id    6WEQ 
#
_exptl.entry_id    6WEQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.783 
_cell.angle_gamma         90 
_cell.entry_id            6WEQ 
_cell.length_a            67.446 
_cell.length_b            329.709 
_cell.length_c            86.717 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N,O,P 1 1 
C,D,I,J,K,L,Q,R,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 T N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 4 1_555 A SG CYS 39 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 A SG CYS 79 A CYS 55 1_555 A SG CYS 167 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf3 A SG CYS 203 A CYS 179 1_555 A SG CYS 247 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf4 A SG CYS 304 A CYS 280 1_555 A SG CYS 353 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf5 A SG CYS 315 A CYS 291 1_555 A SG CYS 336 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 A SG CYS 337 A CYS 313 1_555 A SG CYS 340 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 B SG CYS 28 B CYS 4 1_555 B SG CYS 39 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf8 B SG CYS 79 B CYS 55 1_555 B SG CYS 167 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf9 B SG CYS 203 B CYS 179 1_555 B SG CYS 247 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf10 B SG CYS 304 B CYS 280 1_555 B SG CYS 353 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf11 B SG CYS 315 B CYS 291 1_555 B SG CYS 336 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
disulf ? disulf12 B SG CYS 337 B CYS 313 1_555 B SG CYS 340 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf13 C SG CYS 28 C CYS 4 1_555 C SG CYS 39 C CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf14 C SG CYS 79 C CYS 55 1_555 C SG CYS 167 C CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf15 C SG CYS 203 C CYS 179 1_555 C SG CYS 247 C CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
disulf ? disulf16 C SG CYS 304 C CYS 280 1_555 C SG CYS 353 C CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf17 C SG CYS 315 C CYS 291 1_555 C SG CYS 336 C CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf18 C SG CYS 337 C CYS 313 1_555 C SG CYS 340 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf19 D SG CYS 28 D CYS 4 1_555 D SG CYS 39 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf20 D SG CYS 79 D CYS 55 1_555 D SG CYS 167 D CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf21 D SG CYS 203 D CYS 179 1_555 D SG CYS 247 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf22 D SG CYS 304 D CYS 280 1_555 D SG CYS 353 D CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf23 D SG CYS 315 D CYS 291 1_555 D SG CYS 336 D CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf24 D SG CYS 337 D CYS 313 1_555 D SG CYS 340 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf25 E SG CYS 41 E CYS 22 1_555 E SG CYS 115 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf26 E SG CYS 166 E CYS 146 1_555 E SG CYS 221 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf27 F SG CYS 43 F CYS 23 1_555 F SG CYS 112 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf28 F SG CYS 158 F CYS 138 1_555 F SG CYS 218 F CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf29 G SG CYS 41 G CYS 22 1_555 G SG CYS 115 G CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf30 G SG CYS 46 G CYS 27 1_555 G SG CYS 51 G CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf31 G SG CYS 166 G CYS 146 1_555 G SG CYS 221 G CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf32 H SG CYS 43 H CYS 23 1_555 H SG CYS 112 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf33 H SG CYS 158 H CYS 138 1_555 H SG CYS 218 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf34 I SG CYS 41 I CYS 22 1_555 I SG CYS 115 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf35 I SG CYS 46 I CYS 27 1_555 I SG CYS 51 I CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf36 I SG CYS 166 I CYS 146 1_555 I SG CYS 221 I CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf37 J SG CYS 43 J CYS 23 1_555 J SG CYS 112 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf38 J SG CYS 158 J CYS 138 1_555 J SG CYS 218 J CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf39 K SG CYS 41 K CYS 22 1_555 K SG CYS 115 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf40 K SG CYS 46 K CYS 27 1_555 K SG CYS 51 K CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf41 K SG CYS 166 K CYS 146 1_555 K SG CYS 221 K CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf42 L SG CYS 43 L CYS 23 1_555 L SG CYS 112 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf43 L SG CYS 158 L CYS 138 1_555 L SG CYS 218 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 154 A ASN 130 1_555 M C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 A ND2 ASN 231 A ASN 207 1_555 N C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 B ND2 ASN 154 B ASN 130 1_555 O C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale4 B ND2 ASN 231 B ASN 207 1_555 P C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 C ND2 ASN 154 C ASN 130 1_555 Q C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale6 C ND2 ASN 231 C ASN 207 1_555 R C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 D ND2 ASN 154 D ASN 130 1_555 T C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale8 D ND2 ASN 231 D ASN 207 1_555 U C1 NAG . D NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6WEQ 
_atom_sites.fract_transf_matrix[1][1]    0.014827 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000203 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 NAG A 1 401 401 NAG NAG . 
N 4 NAG A 1 402 421 NAG NAG . 
O 4 NAG B 1 401 401 NAG NAG . 
P 4 NAG B 1 402 421 NAG NAG . 
Q 4 NAG C 1 401 401 NAG NAG . 
R 4 NAG C 1 402 421 NAG NAG . 
S 5 SO4 C 1 403 1 SO4 SO4 . 
T 4 NAG D 1 401 401 NAG NAG . 
U 4 NAG D 1 402 421 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . Q 4 22.167 186.164 43.831 1 108.3 ? C1 NAG 401 C 1 
HETATM 2 C C2 NAG . . . Q 4 20.635 185.977 43.581 1 110.62 ? C2 NAG 401 C 1 
HETATM 3 C C3 NAG . . . Q 4 20.018 185.019 44.616 1 110.79 ? C3 NAG 401 C 1 
HETATM 4 C C4 NAG . . . Q 4 20.833 183.743 44.747 1 107.58 ? C4 NAG 401 C 1 
HETATM 5 C C5 NAG . . . Q 4 22.259 184.136 45.096 1 105.8 ? C5 NAG 401 C 1 
HETATM 6 C C6 NAG . . . Q 4 23.199 182.975 45.296 1 102.73 ? C6 NAG 401 C 1 
HETATM 7 C C7 NAG . . . Q 4 19.865 188.11 42.584 1 114.92 ? C7 NAG 401 C 1 
HETATM 8 C C8 NAG . . . Q 4 19.048 189.36 42.804 1 118.54 ? C8 NAG 401 C 1 
HETATM 9 N N2 NAG . . . Q 4 19.924 187.253 43.612 1 113.85 ? N2 NAG 401 C 1 
HETATM 10 O O3 NAG . . . Q 4 18.664 184.716 44.288 1 112.74 ? O3 NAG 401 C 1 
HETATM 11 O O4 NAG . . . Q 4 20.286 182.936 45.781 1 107.99 ? O4 NAG 401 C 1 
HETATM 12 O O5 NAG . . . Q 4 22.783 184.899 44.009 1 105.49 ? O5 NAG 401 C 1 
HETATM 13 O O6 NAG . . . Q 4 24.521 183.283 44.876 1 100.81 ? O6 NAG 401 C 1 
HETATM 14 O O7 NAG . . . Q 4 20.456 187.893 41.526 1 113.17 ? O7 NAG 401 C 1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#