data_6WF5 # _model_server_result.job_id 5P5JpwBv5wv00vRG4eV6vQ _model_server_result.datetime_utc '2024-11-21 17:45:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 6WF5 # _exptl.entry_id 6WF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (2R)-2-hydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.38 _cell.angle_gamma 90 _cell.entry_id 6WF5 _cell.length_a 50.937 _cell.length_b 52.339 _cell.length_c 64.123 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 C ACE 1 1_555 C N MET 2 C MET 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale2 C CH3 ACE 1 C ACE 1 1_555 E S2 U44 . C U44 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale3 C C PRO 5 C PRO 5 1_555 C N NH2 6 C NH2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale4 D C ACE 1 D ACE 1 1_555 D N MET 2 D MET 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale5 D CH3 ACE 1 D ACE 1 1_555 F S2 U44 . D U44 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale6 D C PRO 5 D PRO 5 1_555 D N NH2 6 D NH2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? # _chem_comp.formula 'C11 H22 N2 O3 S' _chem_comp.formula_weight 262.369 _chem_comp.id U44 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-hydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C28 U44 sing 338 n n O7 C26 U44 doub 339 n n C27 C26 U44 sing 340 n n C27 C28 U44 sing 341 n n C27 O8 U44 sing 342 n n C31 C28 U44 sing 343 n n C26 N6 U44 sing 344 n n C28 C29 U44 sing 345 n n N6 C25 U44 sing 346 n n C25 C24 U44 sing 347 n n C24 C23 U44 sing 348 n n C23 N5 U44 sing 349 n n C23 O6 U44 doub 350 n n N5 C22 U44 sing 351 n n C22 C21 U44 sing 352 n n C21 S2 U44 sing 353 n n C21 H1 U44 sing 354 n n C21 H2 U44 sing 355 n n C22 H3 U44 sing 356 n n C22 H4 U44 sing 357 n n C24 H5 U44 sing 358 n n C24 H6 U44 sing 359 n n S2 H7 U44 sing 360 n n N5 H8 U44 sing 361 n n C25 H9 U44 sing 362 n n C25 H10 U44 sing 363 n n N6 H11 U44 sing 364 n n C27 H12 U44 sing 365 n n O8 H13 U44 sing 366 n n C29 H14 U44 sing 367 n n C29 H15 U44 sing 368 n n C29 H16 U44 sing 369 n n C30 H17 U44 sing 370 n n C30 H18 U44 sing 371 n n C30 H19 U44 sing 372 n n C31 H20 U44 sing 373 n n C31 H21 U44 sing 374 n n C31 H22 U44 sing 375 n n # _atom_sites.entry_id 6WF5 _atom_sites.fract_transf_matrix[1][1] 0.019632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002543 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 U44 C 1 101 9000 U44 LIG . F 3 U44 D 1 101 9001 U44 LIG . G 4 HOH A 1 201 56 HOH HOH . G 4 HOH A 2 202 101 HOH HOH . G 4 HOH A 3 203 11 HOH HOH . G 4 HOH A 4 204 11 HOH HOH . G 4 HOH A 5 205 79 HOH HOH . G 4 HOH A 6 206 3 HOH HOH . G 4 HOH A 7 207 5 HOH HOH . G 4 HOH A 8 208 4 HOH HOH . G 4 HOH A 9 209 77 HOH HOH . G 4 HOH A 10 210 78 HOH HOH . G 4 HOH A 11 211 33 HOH HOH . G 4 HOH A 12 212 10 HOH HOH . G 4 HOH A 13 213 47 HOH HOH . G 4 HOH A 14 214 7 HOH HOH . G 4 HOH A 15 215 4 HOH HOH . G 4 HOH A 16 216 111 HOH HOH . G 4 HOH A 17 217 19 HOH HOH . G 4 HOH A 18 218 45 HOH HOH . G 4 HOH A 19 219 76 HOH HOH . G 4 HOH A 20 220 113 HOH HOH . G 4 HOH A 21 221 71 HOH HOH . G 4 HOH A 22 222 26 HOH HOH . G 4 HOH A 23 223 16 HOH HOH . G 4 HOH A 24 224 115 HOH HOH . G 4 HOH A 25 225 59 HOH HOH . G 4 HOH A 26 226 73 HOH HOH . G 4 HOH A 27 227 7 HOH HOH . G 4 HOH A 28 228 6 HOH HOH . G 4 HOH A 29 229 46 HOH HOH . G 4 HOH A 30 230 72 HOH HOH . G 4 HOH A 31 231 69 HOH HOH . G 4 HOH A 32 232 15 HOH HOH . G 4 HOH A 33 233 49 HOH HOH . G 4 HOH A 34 234 30 HOH HOH . G 4 HOH A 35 235 109 HOH HOH . G 4 HOH A 36 236 57 HOH HOH . G 4 HOH A 37 237 114 HOH HOH . G 4 HOH A 38 238 25 HOH HOH . G 4 HOH A 39 239 87 HOH HOH . G 4 HOH A 40 240 40 HOH HOH . G 4 HOH A 41 241 96 HOH HOH . G 4 HOH A 42 242 12 HOH HOH . G 4 HOH A 43 243 104 HOH HOH . G 4 HOH A 44 244 85 HOH HOH . G 4 HOH A 45 245 62 HOH HOH . G 4 HOH A 46 246 99 HOH HOH . G 4 HOH A 47 247 81 HOH HOH . G 4 HOH A 48 248 97 HOH HOH . G 4 HOH A 49 249 106 HOH HOH . G 4 HOH A 50 250 65 HOH HOH . G 4 HOH A 51 251 103 HOH HOH . G 4 HOH A 52 252 91 HOH HOH . G 4 HOH A 53 253 88 HOH HOH . G 4 HOH A 54 254 80 HOH HOH . H 4 HOH B 1 201 110 HOH HOH . H 4 HOH B 2 202 60 HOH HOH . H 4 HOH B 3 203 5 HOH HOH . H 4 HOH B 4 204 36 HOH HOH . H 4 HOH B 5 205 24 HOH HOH . H 4 HOH B 6 206 42 HOH HOH . H 4 HOH B 7 207 50 HOH HOH . H 4 HOH B 8 208 41 HOH HOH . H 4 HOH B 9 209 3 HOH HOH . H 4 HOH B 10 210 34 HOH HOH . H 4 HOH B 11 211 13 HOH HOH . H 4 HOH B 12 212 119 HOH HOH . H 4 HOH B 13 213 8 HOH HOH . H 4 HOH B 14 214 2 HOH HOH . H 4 HOH B 15 215 61 HOH HOH . H 4 HOH B 16 216 17 HOH HOH . H 4 HOH B 17 217 6 HOH HOH . H 4 HOH B 18 218 105 HOH HOH . H 4 HOH B 19 219 27 HOH HOH . H 4 HOH B 20 220 9 HOH HOH . H 4 HOH B 21 221 94 HOH HOH . H 4 HOH B 22 222 82 HOH HOH . H 4 HOH B 23 223 1 HOH HOH . H 4 HOH B 24 224 67 HOH HOH . H 4 HOH B 25 225 10 HOH HOH . H 4 HOH B 26 226 18 HOH HOH . H 4 HOH B 27 227 37 HOH HOH . H 4 HOH B 28 228 29 HOH HOH . H 4 HOH B 29 229 108 HOH HOH . H 4 HOH B 30 230 107 HOH HOH . H 4 HOH B 31 231 66 HOH HOH . H 4 HOH B 32 232 23 HOH HOH . H 4 HOH B 33 233 39 HOH HOH . H 4 HOH B 34 234 35 HOH HOH . H 4 HOH B 35 235 55 HOH HOH . H 4 HOH B 36 236 14 HOH HOH . H 4 HOH B 37 237 120 HOH HOH . H 4 HOH B 38 238 90 HOH HOH . H 4 HOH B 39 239 9 HOH HOH . H 4 HOH B 40 240 95 HOH HOH . I 4 HOH C 1 201 20 HOH HOH . I 4 HOH C 2 202 84 HOH HOH . I 4 HOH C 3 203 83 HOH HOH . J 4 HOH D 1 201 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 U44 . . . E 3 4.908 1.742 0.312 1 24.71 ? C21 U44 101 C 1 HETATM 2 C C22 U44 . . . E 3 4.815 3.246 0.117 1 24.84 ? C22 U44 101 C 1 HETATM 3 C C24 U44 . . . E 3 5.377 5.422 -2.845 1 19.43 ? C24 U44 101 C 1 HETATM 4 C C26 U44 . . . E 3 4.151 4.177 -5.658 1 18.62 ? C26 U44 101 C 1 HETATM 5 C C28 U44 . . . E 3 3.919 1.637 -5.564 1 23.02 ? C28 U44 101 C 1 HETATM 6 S S2 U44 . . . E 3 6.656 1.236 0.332 1 22.81 ? S2 U44 101 C 1 HETATM 7 N N5 U44 . . . E 3 5.155 3.692 -1.214 1 21.82 ? N5 U44 101 C 1 HETATM 8 C C23 U44 . . . E 3 4.607 4.878 -1.67 1 22.78 ? C23 U44 101 C 1 HETATM 9 O O6 U44 . . . E 3 3.634 5.446 -1.177 1 20.29 ? O6 U44 101 C 1 HETATM 10 C C25 U44 . . . E 3 4.42 5.929 -3.905 1 18.59 ? C25 U44 101 C 1 HETATM 11 N N6 U44 . . . E 3 3.688 4.852 -4.544 1 15.98 ? N6 U44 101 C 1 HETATM 12 O O7 U44 . . . E 3 5.146 4.474 -6.311 1 17.17 ? O7 U44 101 C 1 HETATM 13 C C27 U44 . . . E 3 3.302 2.971 -6.018 1 20.83 ? C27 U44 101 C 1 HETATM 14 O O8 U44 . . . E 3 2.023 3.181 -5.411 1 22.93 ? O8 U44 101 C 1 HETATM 15 C C29 U44 . . . E 3 4.14 1.534 -4.067 1 23.66 ? C29 U44 101 C 1 HETATM 16 C C30 U44 . . . E 3 5.198 1.332 -6.312 1 23.71 ? C30 U44 101 C 1 HETATM 17 C C31 U44 . . . E 3 3.006 0.51 -5.941 1 23.13 ? C31 U44 101 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #