data_6WFG # _model_server_result.job_id vdat9TEMau_eYyX4nuW9xg _model_server_result.datetime_utc '2024-11-02 15:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6WFG # _exptl.entry_id 6WFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.71 _cell.angle_gamma 90 _cell.entry_id 6WFG _cell.length_a 47.83 _cell.length_b 102.94 _cell.length_c 67.64 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6WFG _atom_sites.fract_transf_matrix[1][1] 0.020907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006276 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA A 1 201 203 COA COA . E 3 U3V A 1 202 1 U3V UNL . F 2 COA C 1 201 203 COA COA . G 3 U3V C 1 202 2 U3V UNL . H 2 COA E 1 201 203 COA COA . I 3 U3V E 1 202 3 U3V UNL . J 4 HOH A 1 301 6 HOH HOH . J 4 HOH A 2 302 2 HOH HOH . J 4 HOH A 3 303 15 HOH HOH . J 4 HOH A 4 304 114 HOH HOH . J 4 HOH A 5 305 123 HOH HOH . J 4 HOH A 6 306 138 HOH HOH . J 4 HOH A 7 307 11 HOH HOH . J 4 HOH A 8 308 132 HOH HOH . J 4 HOH A 9 309 17 HOH HOH . J 4 HOH A 10 310 32 HOH HOH . J 4 HOH A 11 311 124 HOH HOH . J 4 HOH A 12 312 29 HOH HOH . J 4 HOH A 13 313 158 HOH HOH . J 4 HOH A 14 314 55 HOH HOH . J 4 HOH A 15 315 113 HOH HOH . J 4 HOH A 16 316 33 HOH HOH . J 4 HOH A 17 317 64 HOH HOH . J 4 HOH A 18 318 94 HOH HOH . J 4 HOH A 19 319 106 HOH HOH . J 4 HOH A 20 320 4 HOH HOH . J 4 HOH A 21 321 53 HOH HOH . J 4 HOH A 22 322 150 HOH HOH . J 4 HOH A 23 323 18 HOH HOH . J 4 HOH A 24 324 28 HOH HOH . J 4 HOH A 25 325 80 HOH HOH . J 4 HOH A 26 326 89 HOH HOH . J 4 HOH A 27 327 60 HOH HOH . J 4 HOH A 28 328 120 HOH HOH . J 4 HOH A 29 329 63 HOH HOH . J 4 HOH A 30 330 27 HOH HOH . J 4 HOH A 31 331 107 HOH HOH . J 4 HOH A 32 332 141 HOH HOH . J 4 HOH A 33 333 35 HOH HOH . J 4 HOH A 34 334 83 HOH HOH . J 4 HOH A 35 335 155 HOH HOH . J 4 HOH A 36 336 128 HOH HOH . J 4 HOH A 37 337 23 HOH HOH . J 4 HOH A 38 338 51 HOH HOH . J 4 HOH A 39 339 67 HOH HOH . J 4 HOH A 40 340 36 HOH HOH . J 4 HOH A 41 341 78 HOH HOH . J 4 HOH A 42 342 52 HOH HOH . J 4 HOH A 43 343 46 HOH HOH . J 4 HOH A 44 344 57 HOH HOH . J 4 HOH A 45 345 119 HOH HOH . J 4 HOH A 46 346 140 HOH HOH . J 4 HOH A 47 347 139 HOH HOH . J 4 HOH A 48 348 25 HOH HOH . J 4 HOH A 49 349 45 HOH HOH . J 4 HOH A 50 350 81 HOH HOH . J 4 HOH A 51 351 134 HOH HOH . J 4 HOH A 52 352 87 HOH HOH . J 4 HOH A 53 353 146 HOH HOH . J 4 HOH A 54 354 130 HOH HOH . J 4 HOH A 55 355 159 HOH HOH . J 4 HOH A 56 356 48 HOH HOH . J 4 HOH A 57 357 101 HOH HOH . J 4 HOH A 58 358 147 HOH HOH . J 4 HOH A 59 359 152 HOH HOH . J 4 HOH A 60 360 75 HOH HOH . J 4 HOH A 61 361 61 HOH HOH . K 4 HOH C 1 301 7 HOH HOH . K 4 HOH C 2 302 129 HOH HOH . K 4 HOH C 3 303 22 HOH HOH . K 4 HOH C 4 304 95 HOH HOH . K 4 HOH C 5 305 97 HOH HOH . K 4 HOH C 6 306 3 HOH HOH . K 4 HOH C 7 307 34 HOH HOH . K 4 HOH C 8 308 16 HOH HOH . K 4 HOH C 9 309 10 HOH HOH . K 4 HOH C 10 310 44 HOH HOH . K 4 HOH C 11 311 12 HOH HOH . K 4 HOH C 12 312 8 HOH HOH . K 4 HOH C 13 313 13 HOH HOH . K 4 HOH C 14 314 26 HOH HOH . K 4 HOH C 15 315 47 HOH HOH . K 4 HOH C 16 316 142 HOH HOH . K 4 HOH C 17 317 99 HOH HOH . K 4 HOH C 18 318 68 HOH HOH . K 4 HOH C 19 319 162 HOH HOH . K 4 HOH C 20 320 9 HOH HOH . K 4 HOH C 21 321 42 HOH HOH . K 4 HOH C 22 322 88 HOH HOH . K 4 HOH C 23 323 39 HOH HOH . K 4 HOH C 24 324 117 HOH HOH . K 4 HOH C 25 325 110 HOH HOH . K 4 HOH C 26 326 84 HOH HOH . K 4 HOH C 27 327 49 HOH HOH . K 4 HOH C 28 328 56 HOH HOH . K 4 HOH C 29 329 122 HOH HOH . K 4 HOH C 30 330 38 HOH HOH . K 4 HOH C 31 331 93 HOH HOH . K 4 HOH C 32 332 72 HOH HOH . K 4 HOH C 33 333 112 HOH HOH . K 4 HOH C 34 334 92 HOH HOH . K 4 HOH C 35 335 131 HOH HOH . K 4 HOH C 36 336 19 HOH HOH . K 4 HOH C 37 337 91 HOH HOH . K 4 HOH C 38 338 70 HOH HOH . K 4 HOH C 39 339 90 HOH HOH . K 4 HOH C 40 340 111 HOH HOH . K 4 HOH C 41 341 43 HOH HOH . K 4 HOH C 42 342 40 HOH HOH . K 4 HOH C 43 343 157 HOH HOH . K 4 HOH C 44 344 109 HOH HOH . K 4 HOH C 45 345 37 HOH HOH . K 4 HOH C 46 346 74 HOH HOH . K 4 HOH C 47 347 137 HOH HOH . K 4 HOH C 48 348 73 HOH HOH . K 4 HOH C 49 349 156 HOH HOH . K 4 HOH C 50 350 108 HOH HOH . L 4 HOH E 1 301 5 HOH HOH . L 4 HOH E 2 302 1 HOH HOH . L 4 HOH E 3 303 161 HOH HOH . L 4 HOH E 4 304 20 HOH HOH . L 4 HOH E 5 305 160 HOH HOH . L 4 HOH E 6 306 76 HOH HOH . L 4 HOH E 7 307 136 HOH HOH . L 4 HOH E 8 308 148 HOH HOH . L 4 HOH E 9 309 86 HOH HOH . L 4 HOH E 10 310 115 HOH HOH . L 4 HOH E 11 311 98 HOH HOH . L 4 HOH E 12 312 127 HOH HOH . L 4 HOH E 13 313 14 HOH HOH . L 4 HOH E 14 314 41 HOH HOH . L 4 HOH E 15 315 144 HOH HOH . L 4 HOH E 16 316 135 HOH HOH . L 4 HOH E 17 317 143 HOH HOH . L 4 HOH E 18 318 24 HOH HOH . L 4 HOH E 19 319 59 HOH HOH . L 4 HOH E 20 320 105 HOH HOH . L 4 HOH E 21 321 100 HOH HOH . L 4 HOH E 22 322 82 HOH HOH . L 4 HOH E 23 323 145 HOH HOH . L 4 HOH E 24 324 58 HOH HOH . L 4 HOH E 25 325 54 HOH HOH . L 4 HOH E 26 326 31 HOH HOH . L 4 HOH E 27 327 102 HOH HOH . L 4 HOH E 28 328 96 HOH HOH . L 4 HOH E 29 329 62 HOH HOH . L 4 HOH E 30 330 66 HOH HOH . L 4 HOH E 31 331 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 2 18.955 -2.34 -5.692 1 77.44 ? N1A COA 201 A 1 HETATM 2 C C2A COA . . . D 2 20.277 -2.196 -5.547 1 78.76 ? C2A COA 201 A 1 HETATM 3 N N3A COA . . . D 2 20.94 -1.462 -4.646 1 78.75 ? N3A COA 201 A 1 HETATM 4 C C4A COA . . . D 2 20.096 -0.833 -3.82 1 79.25 ? C4A COA 201 A 1 HETATM 5 C C5A COA . . . D 2 18.713 -0.887 -3.866 1 78.14 ? C5A COA 201 A 1 HETATM 6 C C6A COA . . . D 2 18.148 -1.679 -4.854 1 77 ? C6A COA 201 A 1 HETATM 7 N N6A COA . . . D 2 16.763 -1.777 -4.983 1 75.99 ? N6A COA 201 A 1 HETATM 8 N N7A COA . . . D 2 18.162 -0.109 -2.883 1 76.93 ? N7A COA 201 A 1 HETATM 9 C C8A COA . . . D 2 19.191 0.41 -2.254 1 78.33 ? C8A COA 201 A 1 HETATM 10 N N9A COA . . . D 2 20.392 0.004 -2.772 1 79.02 ? N9A COA 201 A 1 HETATM 11 C C1B COA . . . D 2 21.704 0.492 -2.355 1 76.86 ? C1B COA 201 A 1 HETATM 12 C C2B COA . . . D 2 22.33 1.368 -3.434 1 77.03 ? C2B COA 201 A 1 HETATM 13 O O2B COA . . . D 2 23.744 1.238 -3.508 1 76.08 ? O2B COA 201 A 1 HETATM 14 C C3B COA . . . D 2 21.914 2.752 -2.993 1 78.17 ? C3B COA 201 A 1 HETATM 15 O O3B COA . . . D 2 22.779 3.752 -3.501 1 84.54 ? O3B COA 201 A 1 HETATM 16 P P3B COA . . . D 2 22.256 4.49 -4.869 1 90.38 ? P3B COA 201 A 1 HETATM 17 O O7A COA . . . D 2 23.104 5.74 -4.855 1 91.18 ? O7A COA 201 A 1 HETATM 18 O O8A COA . . . D 2 22.589 3.517 -5.983 1 92.26 ? O8A COA 201 A 1 HETATM 19 O O9A COA . . . D 2 20.762 4.697 -4.699 1 88.38 ? O9A COA 201 A 1 HETATM 20 C C4B COA . . . D 2 22.018 2.646 -1.495 1 73.4 ? C4B COA 201 A 1 HETATM 21 O O4B COA . . . D 2 21.561 1.328 -1.199 1 75.23 ? O4B COA 201 A 1 HETATM 22 C C5B COA . . . D 2 21.241 3.736 -0.767 1 65.6 ? C5B COA 201 A 1 HETATM 23 O O5B COA . . . D 2 19.864 3.795 -1.133 1 54.37 ? O5B COA 201 A 1 HETATM 24 P P1A COA . . . D 2 18.905 4.893 -0.399 1 47.12 ? P1A COA 201 A 1 HETATM 25 O O1A COA . . . D 2 18.228 5.73 -1.452 1 48.57 ? O1A COA 201 A 1 HETATM 26 O O2A COA . . . D 2 19.56 5.588 0.763 1 46.6 ? O2A COA 201 A 1 HETATM 27 O O3A COA . . . D 2 17.865 3.813 0.229 1 48.03 ? O3A COA 201 A 1 HETATM 28 P P2A COA . . . D 2 16.233 3.763 0.226 1 45.7 ? P2A COA 201 A 1 HETATM 29 O O4A COA . . . D 2 15.726 5.08 0.757 1 46.33 ? O4A COA 201 A 1 HETATM 30 O O5A COA . . . D 2 15.758 3.258 -1.115 1 47.44 ? O5A COA 201 A 1 HETATM 31 O O6A COA . . . D 2 15.95 2.668 1.392 1 45.38 ? O6A COA 201 A 1 HETATM 32 C CBP COA . . . D 2 15.554 0.365 2.043 1 44.38 ? CBP COA 201 A 1 HETATM 33 C CCP COA . . . D 2 16.534 1.353 1.413 1 45.02 ? CCP COA 201 A 1 HETATM 34 C CDP COA . . . D 2 16.166 -1.025 2.043 1 42.11 ? CDP COA 201 A 1 HETATM 35 C CEP COA . . . D 2 15.388 0.737 3.498 1 43.78 ? CEP COA 201 A 1 HETATM 36 C CAP COA . . . D 2 14.236 0.439 1.249 1 47 ? CAP COA 201 A 1 HETATM 37 O OAP COA . . . D 2 14.243 -0.311 0.033 1 45.57 ? OAP COA 201 A 1 HETATM 38 C C9P COA . . . D 2 12.978 0.063 1.978 1 49.51 ? C9P COA 201 A 1 HETATM 39 O O9P COA . . . D 2 12.296 0.903 2.547 1 46.56 ? O9P COA 201 A 1 HETATM 40 N N8P COA . . . D 2 12.704 -1.285 1.887 1 52.47 ? N8P COA 201 A 1 HETATM 41 C C7P COA . . . D 2 11.533 -1.887 2.477 1 52.66 ? C7P COA 201 A 1 HETATM 42 C C6P COA . . . D 2 11.722 -2.01 3.961 1 55.17 ? C6P COA 201 A 1 HETATM 43 C C5P COA . . . D 2 12.19 -3.38 4.295 1 61.7 ? C5P COA 201 A 1 HETATM 44 O O5P COA . . . D 2 11.487 -4.358 4.047 1 68.96 ? O5P COA 201 A 1 HETATM 45 N N4P COA . . . D 2 13.429 -3.357 4.922 1 59.6 ? N4P COA 201 A 1 HETATM 46 C C3P COA . . . D 2 13.743 -4.26 6.017 1 59.59 ? C3P COA 201 A 1 HETATM 47 C C2P COA . . . D 2 14.95 -3.816 6.819 1 59.36 ? C2P COA 201 A 1 HETATM 48 S S1P COA . . . D 2 14.405 -3.373 8.497 1 59.41 ? S1P COA 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #