data_6WFO # _model_server_result.job_id zBi_Yq0o3bYbqB_9l70M1A _model_server_result.datetime_utc '2024-11-28 22:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6WFO # _exptl.entry_id 6WFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.566 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-1-methyl-N-{(3S,5R)-5-[4-(methylcarbamoyl)-1,3-thiazol-2-yl]-1-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]pyrrolidin-3-yl}-2,6-dioxohexahydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 6WFO _cell.length_a 47.87 _cell.length_b 102.63 _cell.length_c 67.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C23 H24 N10 O5 S' _chem_comp.formula_weight 552.566 _chem_comp.id U3Y _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-1-methyl-N-{(3S,5R)-5-[4-(methylcarbamoyl)-1,3-thiazol-2-yl]-1-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]pyrrolidin-3-yl}-2,6-dioxohexahydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C14 U3Y doub 421 n n C15 N5 U3Y sing 422 n n C14 N5 U3Y sing 423 n n C14 N6 U3Y sing 424 n n N5 C13 U3Y sing 425 n n N6 C11 U3Y sing 426 n n C13 O4 U3Y doub 427 n n C13 C12 U3Y sing 428 n n C12 C11 U3Y sing 429 n n C11 C10 U3Y sing 430 n n O2 C10 U3Y doub 431 n n C10 N4 U3Y sing 432 n n N8 N9 U3Y doub 433 n y N8 N7 U3Y sing 434 n y N9 N10 U3Y sing 435 n y N7 C23 U3Y doub 436 n y N10 C23 U3Y sing 437 n y N4 C3 U3Y sing 438 n n C23 C20 U3Y sing 439 n n C20 C19 U3Y doub 440 n y C20 C21 U3Y sing 441 n y C19 C18 U3Y sing 442 n y C3 C2 U3Y sing 443 n n C3 C4 U3Y sing 444 n n C2 N1 U3Y sing 445 n n C21 C22 U3Y doub 446 n y C18 C17 U3Y doub 447 n y C22 C17 U3Y sing 448 n y C17 C16 U3Y sing 449 n n C4 C1 U3Y sing 450 n n N1 C16 U3Y sing 451 n n N1 C1 U3Y sing 452 n n C16 O5 U3Y doub 453 n n C1 C5 U3Y sing 454 n n S1 C5 U3Y sing 455 n y S1 C7 U3Y sing 456 n y C5 N2 U3Y doub 457 n y N2 C6 U3Y sing 458 n y C7 C6 U3Y doub 459 n y C6 C8 U3Y sing 460 n n O1 C8 U3Y doub 461 n n C8 N3 U3Y sing 462 n n N3 C9 U3Y sing 463 n n C19 H21 U3Y sing 464 n n C21 H22 U3Y sing 465 n n C18 H20 U3Y sing 466 n n C22 H23 U3Y sing 467 n n C7 H7 U3Y sing 468 n n C12 H15 U3Y sing 469 n n C12 H14 U3Y sing 470 n n C4 H5 U3Y sing 471 n n C4 H6 U3Y sing 472 n n C2 H3 U3Y sing 473 n n C2 H2 U3Y sing 474 n n C1 H1 U3Y sing 475 n n C11 H13 U3Y sing 476 n n C3 H4 U3Y sing 477 n n C15 H19 U3Y sing 478 n n C15 H17 U3Y sing 479 n n C15 H18 U3Y sing 480 n n C9 H10 U3Y sing 481 n n C9 H11 U3Y sing 482 n n C9 H9 U3Y sing 483 n n N10 H24 U3Y sing 484 n n N6 H16 U3Y sing 485 n n N3 H8 U3Y sing 486 n n N4 H12 U3Y sing 487 n n # _atom_sites.entry_id 6WFO _atom_sites.fract_transf_matrix[1][1] 0.02089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006022 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACO A 1 201 201 ACO ACO . E 3 U3Y A 1 202 301 U3Y UNL . F 2 ACO B 1 201 201 ACO ACO . G 3 U3Y B 1 202 301 U3Y UNL . H 2 ACO C 1 201 201 ACO ACO . I 3 U3Y C 1 202 301 U3Y UNL . J 4 HOH A 1 301 4 HOH HOH . J 4 HOH A 2 302 80 HOH HOH . J 4 HOH A 3 303 18 HOH HOH . J 4 HOH A 4 304 70 HOH HOH . J 4 HOH A 5 305 17 HOH HOH . J 4 HOH A 6 306 5 HOH HOH . J 4 HOH A 7 307 19 HOH HOH . J 4 HOH A 8 308 23 HOH HOH . J 4 HOH A 9 309 26 HOH HOH . J 4 HOH A 10 310 22 HOH HOH . J 4 HOH A 11 311 55 HOH HOH . J 4 HOH A 12 312 73 HOH HOH . J 4 HOH A 13 313 24 HOH HOH . J 4 HOH A 14 314 64 HOH HOH . J 4 HOH A 15 315 14 HOH HOH . J 4 HOH A 16 316 69 HOH HOH . J 4 HOH A 17 317 29 HOH HOH . J 4 HOH A 18 318 66 HOH HOH . J 4 HOH A 19 319 28 HOH HOH . J 4 HOH A 20 320 1 HOH HOH . J 4 HOH A 21 321 72 HOH HOH . J 4 HOH A 22 322 31 HOH HOH . J 4 HOH A 23 323 79 HOH HOH . J 4 HOH A 24 324 27 HOH HOH . J 4 HOH A 25 325 30 HOH HOH . J 4 HOH A 26 326 25 HOH HOH . J 4 HOH A 27 327 77 HOH HOH . K 4 HOH B 1 301 37 HOH HOH . K 4 HOH B 2 302 49 HOH HOH . K 4 HOH B 3 303 32 HOH HOH . K 4 HOH B 4 304 63 HOH HOH . K 4 HOH B 5 305 53 HOH HOH . K 4 HOH B 6 306 36 HOH HOH . K 4 HOH B 7 307 3 HOH HOH . K 4 HOH B 8 308 35 HOH HOH . K 4 HOH B 9 309 75 HOH HOH . K 4 HOH B 10 310 51 HOH HOH . K 4 HOH B 11 311 57 HOH HOH . K 4 HOH B 12 312 11 HOH HOH . K 4 HOH B 13 313 68 HOH HOH . K 4 HOH B 14 314 38 HOH HOH . K 4 HOH B 15 315 54 HOH HOH . K 4 HOH B 16 316 8 HOH HOH . K 4 HOH B 17 317 12 HOH HOH . K 4 HOH B 18 318 65 HOH HOH . K 4 HOH B 19 319 61 HOH HOH . K 4 HOH B 20 320 13 HOH HOH . K 4 HOH B 21 321 74 HOH HOH . K 4 HOH B 22 322 76 HOH HOH . K 4 HOH B 23 323 10 HOH HOH . K 4 HOH B 24 324 62 HOH HOH . K 4 HOH B 25 325 6 HOH HOH . K 4 HOH B 26 326 39 HOH HOH . K 4 HOH B 27 327 67 HOH HOH . K 4 HOH B 28 328 56 HOH HOH . K 4 HOH B 29 329 40 HOH HOH . K 4 HOH B 30 330 52 HOH HOH . K 4 HOH B 31 331 82 HOH HOH . K 4 HOH B 32 332 33 HOH HOH . K 4 HOH B 33 333 60 HOH HOH . K 4 HOH B 34 334 34 HOH HOH . K 4 HOH B 35 335 81 HOH HOH . K 4 HOH B 36 336 50 HOH HOH . L 4 HOH C 1 301 41 HOH HOH . L 4 HOH C 2 302 58 HOH HOH . L 4 HOH C 3 303 2 HOH HOH . L 4 HOH C 4 304 47 HOH HOH . L 4 HOH C 5 305 15 HOH HOH . L 4 HOH C 6 306 20 HOH HOH . L 4 HOH C 7 307 9 HOH HOH . L 4 HOH C 8 308 21 HOH HOH . L 4 HOH C 9 309 48 HOH HOH . L 4 HOH C 10 310 7 HOH HOH . L 4 HOH C 11 311 46 HOH HOH . L 4 HOH C 12 312 71 HOH HOH . L 4 HOH C 13 313 78 HOH HOH . L 4 HOH C 14 314 59 HOH HOH . L 4 HOH C 15 315 45 HOH HOH . L 4 HOH C 16 316 42 HOH HOH . L 4 HOH C 17 317 44 HOH HOH . L 4 HOH C 18 318 16 HOH HOH . L 4 HOH C 19 319 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 U3Y . . . E 3 7.972 -11.695 14.677 1 30.35 ? C19 U3Y 202 A 1 HETATM 2 C C21 U3Y . . . E 3 6.154 -10.086 14.823 1 30.31 ? C21 U3Y 202 A 1 HETATM 3 C C18 U3Y . . . E 3 8.789 -10.848 15.436 1 30.33 ? C18 U3Y 202 A 1 HETATM 4 C C22 U3Y . . . E 3 6.968 -9.228 15.575 1 30.34 ? C22 U3Y 202 A 1 HETATM 5 C C7 U3Y . . . E 3 13.825 -9.74 19.051 1 30.55 ? C7 U3Y 202 A 1 HETATM 6 C C20 U3Y . . . E 3 6.651 -11.321 14.375 1 33.84 ? C20 U3Y 202 A 1 HETATM 7 C C17 U3Y . . . E 3 8.28 -9.617 15.867 1 31.82 ? C17 U3Y 202 A 1 HETATM 8 C C6 U3Y . . . E 3 13.952 -8.417 19.402 1 38.87 ? C6 U3Y 202 A 1 HETATM 9 C C23 U3Y . . . E 3 5.8 -12.215 13.558 1 39.21 ? C23 U3Y 202 A 1 HETATM 10 C C5 U3Y . . . E 3 12.312 -8.179 17.921 1 38.09 ? C5 U3Y 202 A 1 HETATM 11 C C13 U3Y . . . E 3 10.551 -6.549 10.103 1 31.31 ? C13 U3Y 202 A 1 HETATM 12 C C14 U3Y . . . E 3 12.386 -7.83 8.991 1 29.58 ? C14 U3Y 202 A 1 HETATM 13 C C16 U3Y . . . E 3 9.112 -8.717 16.667 1 33.77 ? C16 U3Y 202 A 1 HETATM 14 C C8 U3Y . . . E 3 14.939 -7.944 20.349 1 41.11 ? C8 U3Y 202 A 1 HETATM 15 C C10 U3Y . . . E 3 12.555 -7.613 12.302 1 30.24 ? C10 U3Y 202 A 1 HETATM 16 C C12 U3Y . . . E 3 11.669 -5.805 10.817 1 30.04 ? C12 U3Y 202 A 1 HETATM 17 C C4 U3Y . . . E 3 12.027 -6.731 15.906 1 30.04 ? C4 U3Y 202 A 1 HETATM 18 C C2 U3Y . . . E 3 10.757 -8.358 14.761 1 29.98 ? C2 U3Y 202 A 1 HETATM 19 C C1 U3Y . . . E 3 11.286 -7.528 16.994 1 30.4 ? C1 U3Y 202 A 1 HETATM 20 C C11 U3Y . . . E 3 12.859 -6.677 11.16 1 30.32 ? C11 U3Y 202 A 1 HETATM 21 C C3 U3Y . . . E 3 12.148 -7.713 14.739 1 30.35 ? C3 U3Y 202 A 1 HETATM 22 C C15 U3Y . . . E 3 10.061 -8.475 8.604 1 29.78 ? C15 U3Y 202 A 1 HETATM 23 C C9 U3Y . . . E 3 14.088 -7.984 22.553 0 29.77 ? C9 U3Y 202 A 1 HETATM 24 N N10 U3Y . . . E 3 6.184 -13.437 13.134 1 40.05 ? N10 U3Y 202 A 1 HETATM 25 N N2 U3Y . . . E 3 13.091 -7.539 18.764 1 40.27 ? N2 U3Y 202 A 1 HETATM 26 N N7 U3Y . . . E 3 4.58 -11.87 13.094 1 41.06 ? N7 U3Y 202 A 1 HETATM 27 N N9 U3Y . . . E 3 5.153 -13.861 12.362 1 39.53 ? N9 U3Y 202 A 1 HETATM 28 N N8 U3Y . . . E 3 4.176 -12.928 12.341 1 39.26 ? N8 U3Y 202 A 1 HETATM 29 N N6 U3Y . . . E 3 13.247 -7.475 10.019 1 30.26 ? N6 U3Y 202 A 1 HETATM 30 N N5 U3Y . . . E 3 11.016 -7.633 9.304 1 32.34 ? N5 U3Y 202 A 1 HETATM 31 N N1 U3Y . . . E 3 10.394 -8.414 16.189 1 31.73 ? N1 U3Y 202 A 1 HETATM 32 N N3 U3Y . . . E 3 14.35 -7.253 21.353 0 30.6 ? N3 U3Y 202 A 1 HETATM 33 N N4 U3Y . . . E 3 12.5 -6.988 13.523 1 30.27 ? N4 U3Y 202 A 1 HETATM 34 O O4 U3Y . . . E 3 9.388 -6.191 10.22 1 30.09 ? O4 U3Y 202 A 1 HETATM 35 O O3 U3Y . . . E 3 12.767 -8.294 7.931 1 29.61 ? O3 U3Y 202 A 1 HETATM 36 O O5 U3Y . . . E 3 8.603 -8.321 17.708 1 35.43 ? O5 U3Y 202 A 1 HETATM 37 O O1 U3Y . . . E 3 16.151 -8.15 20.238 1 46.28 ? O1 U3Y 202 A 1 HETATM 38 O O2 U3Y . . . E 3 12.382 -8.81 12.156 1 30.89 ? O2 U3Y 202 A 1 HETATM 39 S S1 U3Y . . . E 3 12.568 -9.864 17.888 1 43.58 ? S1 U3Y 202 A 1 HETATM 40 H H21 U3Y . . . E 3 8.37 -12.644 14.337 1 30 ? H21 U3Y 202 A 1 HETATM 41 H H22 U3Y . . . E 3 5.139 -9.785 14.593 1 30 ? H22 U3Y 202 A 1 HETATM 42 H H20 U3Y . . . E 3 9.806 -11.135 15.676 1 30 ? H20 U3Y 202 A 1 HETATM 43 H H23 U3Y . . . E 3 6.584 -8.275 15.923 1 30 ? H23 U3Y 202 A 1 HETATM 44 H H7 U3Y . . . E 3 14.373 -10.593 19.419 1 30 ? H7 U3Y 202 A 1 HETATM 45 H H15 U3Y . . . E 3 11.264 -5.35 11.718 1 30 ? H15 U3Y 202 A 1 HETATM 46 H H14 U3Y . . . E 3 11.991 -4.999 10.154 1 30 ? H14 U3Y 202 A 1 HETATM 47 H H5 U3Y . . . E 3 11.444 -5.853 15.613 1 30 ? H5 U3Y 202 A 1 HETATM 48 H H6 U3Y . . . E 3 13.015 -6.404 16.242 1 30 ? H6 U3Y 202 A 1 HETATM 49 H H3 U3Y . . . E 3 10.79 -9.371 14.355 1 30 ? H3 U3Y 202 A 1 HETATM 50 H H2 U3Y . . . E 3 10.011 -7.765 14.231 1 30 ? H2 U3Y 202 A 1 HETATM 51 H H1 U3Y . . . E 3 10.662 -6.841 17.572 1 30 ? H1 U3Y 202 A 1 HETATM 52 H H13 U3Y . . . E 3 13.717 -6.068 11.443 1 30 ? H13 U3Y 202 A 1 HETATM 53 H H4 U3Y . . . E 3 12.914 -8.466 14.955 1 30 ? H4 U3Y 202 A 1 HETATM 54 H H19 U3Y . . . E 3 10.457 -9.493 8.551 1 30 ? H19 U3Y 202 A 1 HETATM 55 H H17 U3Y . . . E 3 9.931 -8.082 7.592 1 30 ? H17 U3Y 202 A 1 HETATM 56 H H18 U3Y . . . E 3 9.103 -8.484 9.128 1 30 ? H18 U3Y 202 A 1 HETATM 57 H H10 U3Y . . . E 3 13.557 -7.327 23.247 1 30 ? H10 U3Y 202 A 1 HETATM 58 H H11 U3Y . . . E 3 15.041 -8.31 22.981 1 30 ? H11 U3Y 202 A 1 HETATM 59 H H9 U3Y . . . E 3 13.471 -8.851 22.297 1 30 ? H9 U3Y 202 A 1 HETATM 60 H H16 U3Y . . . E 3 14.23 -7.679 9.899 1 30 ? H16 U3Y 202 A 1 HETATM 61 H H8 U3Y . . . E 3 13.751 -6.471 21.111 1 30 ? H8 U3Y 202 A 1 HETATM 62 H H12 U3Y . . . E 3 12.653 -5.986 13.573 1 30 ? H12 U3Y 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 62 #