data_6WG9 # _model_server_result.job_id 3EF5ka8GHcTKTstX3xyIJg _model_server_result.datetime_utc '2024-10-20 01:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6WG9 # _exptl.entry_id 6WG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WG9 _cell.length_a 57.13 _cell.length_b 131.97 _cell.length_c 136.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6WG9 _atom_sites.fract_transf_matrix[1][1] 0.017504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 389 FAD FAD . D 2 FAD B 1 401 389 FAD FAD . E 3 HOH A 1 501 34 HOH HOH . E 3 HOH A 2 502 57 HOH HOH . E 3 HOH A 3 503 70 HOH HOH . E 3 HOH A 4 504 85 HOH HOH . E 3 HOH A 5 505 28 HOH HOH . E 3 HOH A 6 506 2 HOH HOH . E 3 HOH A 7 507 29 HOH HOH . E 3 HOH A 8 508 69 HOH HOH . E 3 HOH A 9 509 75 HOH HOH . E 3 HOH A 10 510 26 HOH HOH . E 3 HOH A 11 511 27 HOH HOH . E 3 HOH A 12 512 25 HOH HOH . E 3 HOH A 13 513 1 HOH HOH . E 3 HOH A 14 514 72 HOH HOH . E 3 HOH A 15 515 78 HOH HOH . E 3 HOH A 16 516 3 HOH HOH . E 3 HOH A 17 517 41 HOH HOH . E 3 HOH A 18 518 68 HOH HOH . E 3 HOH A 19 519 39 HOH HOH . E 3 HOH A 20 520 40 HOH HOH . E 3 HOH A 21 521 5 HOH HOH . E 3 HOH A 22 522 20 HOH HOH . E 3 HOH A 23 523 48 HOH HOH . E 3 HOH A 24 524 73 HOH HOH . E 3 HOH A 25 525 62 HOH HOH . E 3 HOH A 26 526 43 HOH HOH . E 3 HOH A 27 527 45 HOH HOH . E 3 HOH A 28 528 21 HOH HOH . E 3 HOH A 29 529 14 HOH HOH . E 3 HOH A 30 530 15 HOH HOH . E 3 HOH A 31 531 71 HOH HOH . E 3 HOH A 32 532 83 HOH HOH . F 3 HOH B 1 501 52 HOH HOH . F 3 HOH B 2 502 82 HOH HOH . F 3 HOH B 3 503 84 HOH HOH . F 3 HOH B 4 504 10 HOH HOH . F 3 HOH B 5 505 81 HOH HOH . F 3 HOH B 6 506 65 HOH HOH . F 3 HOH B 7 507 24 HOH HOH . F 3 HOH B 8 508 30 HOH HOH . F 3 HOH B 9 509 42 HOH HOH . F 3 HOH B 10 510 22 HOH HOH . F 3 HOH B 11 511 87 HOH HOH . F 3 HOH B 12 512 38 HOH HOH . F 3 HOH B 13 513 79 HOH HOH . F 3 HOH B 14 514 76 HOH HOH . F 3 HOH B 15 515 8 HOH HOH . F 3 HOH B 16 516 4 HOH HOH . F 3 HOH B 17 517 36 HOH HOH . F 3 HOH B 18 518 77 HOH HOH . F 3 HOH B 19 519 59 HOH HOH . F 3 HOH B 20 520 88 HOH HOH . F 3 HOH B 21 521 86 HOH HOH . F 3 HOH B 22 522 80 HOH HOH . F 3 HOH B 23 523 6 HOH HOH . F 3 HOH B 24 524 13 HOH HOH . F 3 HOH B 25 525 37 HOH HOH . F 3 HOH B 26 526 44 HOH HOH . F 3 HOH B 27 527 89 HOH HOH . F 3 HOH B 28 528 58 HOH HOH . F 3 HOH B 29 529 74 HOH HOH . F 3 HOH B 30 530 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 33.509 57.977 83.731 1 43.16 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . C 2 33.825 57.47 85.088 1 42.2 -1 O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . C 2 32.173 57.5 83.149 1 42.36 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . C 2 34.698 57.629 82.76 1 45.57 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . C 2 36.071 57.727 83.196 1 48.62 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . C 2 36.953 56.914 82.283 1 49.31 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . C 2 38.342 57.158 82.616 1 49.06 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . C 2 36.752 55.402 82.38 1 49.36 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . C 2 36.823 54.811 81.087 1 49.72 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . C 2 37.915 54.963 83.273 1 48.55 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . C 2 38.292 53.609 83.069 1 49.81 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . C 2 38.998 55.921 82.787 1 47.88 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . C 2 40.12 56.091 83.703 1 48.48 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . C 2 40.095 56.085 85.072 1 48.94 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . C 2 41.274 56.238 85.627 1 48.09 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . C 2 42.135 56.346 84.546 1 49.22 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . C 2 43.528 56.526 84.453 1 52.63 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . C 2 44.338 56.633 85.511 1 54.13 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . C 2 44.07 56.593 83.218 1 53.93 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . C 2 43.274 56.481 82.153 1 55.99 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . C 2 41.951 56.308 82.12 1 55.58 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . C 2 41.438 56.25 83.354 1 50.52 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . C 2 24.46 59.517 85.223 1 50.11 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . C 2 23.402 59.709 84.388 1 51.04 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . C 2 23.426 60.576 83.511 1 48.26 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . C 2 22.271 58.925 84.523 1 52.28 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . C 2 22.09 57.921 85.454 1 50.74 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . C 2 21.037 57.288 85.484 1 51.46 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . C 2 23.226 57.728 86.335 1 47.77 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . C 2 23.147 56.802 87.247 1 45.08 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . C 2 24.235 56.622 88.087 1 42.17 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . C 2 24.164 55.641 89.076 1 40.11 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . C 2 25.23 55.417 89.943 1 37.92 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . C 2 25.116 54.339 90.988 1 35.79 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . C 2 26.392 56.198 89.828 1 37.14 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . C 2 27.569 55.984 90.743 1 35.84 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . C 2 26.465 57.175 88.839 1 39.24 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . C 2 25.398 57.396 87.974 1 42.11 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . C 2 25.43 58.394 86.977 1 44.97 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . C 2 24.368 58.579 86.137 1 47.39 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . C 2 26.622 59.221 86.771 1 45.64 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . C 2 27.3 58.919 85.425 1 46.6 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . C 2 27.636 57.533 85.329 1 48.64 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . C 2 28.57 59.757 85.298 1 46.46 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . C 2 28.232 61.12 85.52 1 46.66 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . C 2 29.228 59.641 83.926 1 45.81 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . C 2 29.662 58.299 83.716 1 43.75 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . C 2 30.413 60.573 83.805 1 46.05 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . C 2 31.268 60.102 82.745 1 42.05 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . C 2 32.785 60.512 82.678 1 40.98 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . C 2 33.311 60.151 81.286 1 39.26 -1 O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . C 2 32.947 61.938 83.081 1 38.02 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . C 2 33.505 59.563 83.734 1 38.98 ? O3P FAD 401 A 1 HETATM 54 H H51A FAD . . . C 2 36.143 57.399 84.074 1 58.29 ? H51A FAD 401 A 1 HETATM 55 H H52A FAD . . . C 2 36.342 58.625 83.174 1 58.29 ? H52A FAD 401 A 1 HETATM 56 H H4B FAD . . . C 2 36.819 57.175 81.392 1 59.12 ? H4B FAD 401 A 1 HETATM 57 H H3B FAD . . . C 2 35.935 55.204 82.799 1 59.19 ? H3B FAD 401 A 1 HETATM 58 H HO3A FAD . . . C 2 37.554 55.002 80.737 1 59.61 ? HO3A FAD 401 A 1 HETATM 59 H H2B FAD . . . C 2 37.717 55.101 84.18 1 58.22 ? H2B FAD 401 A 1 HETATM 60 H HO2A FAD . . . C 2 38.519 53.505 82.277 1 59.72 ? HO2A FAD 401 A 1 HETATM 61 H H1B FAD . . . C 2 39.338 55.627 81.962 1 57.41 ? H1B FAD 401 A 1 HETATM 62 H H8A FAD . . . C 2 39.312 55.984 85.561 1 58.67 ? H8A FAD 401 A 1 HETATM 63 H H61A FAD . . . C 2 44.01 56.6 86.314 1 64.9 ? H61A FAD 401 A 1 HETATM 64 H H62A FAD . . . C 2 45.192 56.729 85.392 1 64.9 ? H62A FAD 401 A 1 HETATM 65 H H2A FAD . . . C 2 43.694 56.53 81.326 1 67.14 ? H2A FAD 401 A 1 HETATM 66 H HN3 FAD . . . C 2 21.619 59.081 83.973 1 62.69 ? HN3 FAD 401 A 1 HETATM 67 H H6 FAD . . . C 2 23.34 55.213 89.038 1 48.08 ? H6 FAD 401 A 1 HETATM 68 H HM71 FAD . . . C 2 25.964 53.969 91.149 1 42.9 ? HM71 FAD 401 A 1 HETATM 69 H HM72 FAD . . . C 2 24.535 53.668 90.683 1 42.9 ? HM72 FAD 401 A 1 HETATM 70 H HM73 FAD . . . C 2 24.779 54.707 91.783 1 42.9 ? HM73 FAD 401 A 1 HETATM 71 H HM81 FAD . . . C 2 28.342 56.343 90.348 1 42.96 ? HM81 FAD 401 A 1 HETATM 72 H HM82 FAD . . . C 2 27.689 55.064 90.886 1 42.96 ? HM82 FAD 401 A 1 HETATM 73 H HM83 FAD . . . C 2 27.409 56.411 91.563 1 42.96 ? HM83 FAD 401 A 1 HETATM 74 H H9 FAD . . . C 2 27.139 57.737 89.144 1 47.04 ? H9 FAD 401 A 1 HETATM 75 H "H1'1" FAD . . . C 2 27.232 59.052 87.464 1 54.72 ? "H1'1" FAD 401 A 1 HETATM 76 H "H1'2" FAD . . . C 2 26.371 60.126 86.789 1 54.72 ? "H1'2" FAD 401 A 1 HETATM 77 H H2' FAD . . . C 2 26.71 59.141 84.73 1 55.88 ? H2' FAD 401 A 1 HETATM 78 H HO2' FAD . . . C 2 27.863 57.356 84.548 1 58.32 ? HO2' FAD 401 A 1 HETATM 79 H H3' FAD . . . C 2 29.183 59.489 85.956 1 55.71 ? H3' FAD 401 A 1 HETATM 80 H HO3' FAD . . . C 2 28.918 61.59 85.493 1 55.94 ? HO3' FAD 401 A 1 HETATM 81 H H4' FAD . . . C 2 28.589 59.85 83.271 1 54.92 ? H4' FAD 401 A 1 HETATM 82 H HO4' FAD . . . C 2 30.053 58.252 82.983 1 52.46 ? HO4' FAD 401 A 1 HETATM 83 H "H5'1" FAD . . . C 2 30.89 60.583 84.613 1 55.22 ? "H5'1" FAD 401 A 1 HETATM 84 H "H5'2" FAD . . . C 2 30.114 61.44 83.606 1 55.22 ? "H5'2" FAD 401 A 1 # _model_server_stats.io_time_ms 362 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 84 #