data_6WG9 # _model_server_result.job_id wTJNnNCEl62yimXk0pog7Q _model_server_result.datetime_utc '2024-10-20 01:27:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6WG9 # _exptl.entry_id 6WG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WG9 _cell.length_a 57.13 _cell.length_b 131.97 _cell.length_c 136.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6WG9 _atom_sites.fract_transf_matrix[1][1] 0.017504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 389 FAD FAD . D 2 FAD B 1 401 389 FAD FAD . E 3 HOH A 1 501 34 HOH HOH . E 3 HOH A 2 502 57 HOH HOH . E 3 HOH A 3 503 70 HOH HOH . E 3 HOH A 4 504 85 HOH HOH . E 3 HOH A 5 505 28 HOH HOH . E 3 HOH A 6 506 2 HOH HOH . E 3 HOH A 7 507 29 HOH HOH . E 3 HOH A 8 508 69 HOH HOH . E 3 HOH A 9 509 75 HOH HOH . E 3 HOH A 10 510 26 HOH HOH . E 3 HOH A 11 511 27 HOH HOH . E 3 HOH A 12 512 25 HOH HOH . E 3 HOH A 13 513 1 HOH HOH . E 3 HOH A 14 514 72 HOH HOH . E 3 HOH A 15 515 78 HOH HOH . E 3 HOH A 16 516 3 HOH HOH . E 3 HOH A 17 517 41 HOH HOH . E 3 HOH A 18 518 68 HOH HOH . E 3 HOH A 19 519 39 HOH HOH . E 3 HOH A 20 520 40 HOH HOH . E 3 HOH A 21 521 5 HOH HOH . E 3 HOH A 22 522 20 HOH HOH . E 3 HOH A 23 523 48 HOH HOH . E 3 HOH A 24 524 73 HOH HOH . E 3 HOH A 25 525 62 HOH HOH . E 3 HOH A 26 526 43 HOH HOH . E 3 HOH A 27 527 45 HOH HOH . E 3 HOH A 28 528 21 HOH HOH . E 3 HOH A 29 529 14 HOH HOH . E 3 HOH A 30 530 15 HOH HOH . E 3 HOH A 31 531 71 HOH HOH . E 3 HOH A 32 532 83 HOH HOH . F 3 HOH B 1 501 52 HOH HOH . F 3 HOH B 2 502 82 HOH HOH . F 3 HOH B 3 503 84 HOH HOH . F 3 HOH B 4 504 10 HOH HOH . F 3 HOH B 5 505 81 HOH HOH . F 3 HOH B 6 506 65 HOH HOH . F 3 HOH B 7 507 24 HOH HOH . F 3 HOH B 8 508 30 HOH HOH . F 3 HOH B 9 509 42 HOH HOH . F 3 HOH B 10 510 22 HOH HOH . F 3 HOH B 11 511 87 HOH HOH . F 3 HOH B 12 512 38 HOH HOH . F 3 HOH B 13 513 79 HOH HOH . F 3 HOH B 14 514 76 HOH HOH . F 3 HOH B 15 515 8 HOH HOH . F 3 HOH B 16 516 4 HOH HOH . F 3 HOH B 17 517 36 HOH HOH . F 3 HOH B 18 518 77 HOH HOH . F 3 HOH B 19 519 59 HOH HOH . F 3 HOH B 20 520 88 HOH HOH . F 3 HOH B 21 521 86 HOH HOH . F 3 HOH B 22 522 80 HOH HOH . F 3 HOH B 23 523 6 HOH HOH . F 3 HOH B 24 524 13 HOH HOH . F 3 HOH B 25 525 37 HOH HOH . F 3 HOH B 26 526 44 HOH HOH . F 3 HOH B 27 527 89 HOH HOH . F 3 HOH B 28 528 58 HOH HOH . F 3 HOH B 29 529 74 HOH HOH . F 3 HOH B 30 530 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 2 10.337 82.922 111.705 1 46.25 ? PA FAD 401 B 1 HETATM 2 O O1A FAD . . . D 2 9.992 81.556 112.17 1 47.92 -1 O1A FAD 401 B 1 HETATM 3 O O2A FAD . . . D 2 11.578 83.535 112.374 1 46.26 ? O2A FAD 401 B 1 HETATM 4 O O5B FAD . . . D 2 9.092 83.869 111.893 1 49.25 ? O5B FAD 401 B 1 HETATM 5 C C5B FAD . . . D 2 7.75 83.41 111.627 1 49.76 ? C5B FAD 401 B 1 HETATM 6 C C4B FAD . . . D 2 6.807 84.326 112.365 1 50.71 ? C4B FAD 401 B 1 HETATM 7 O O4B FAD . . . D 2 5.447 84.031 111.982 1 51.01 ? O4B FAD 401 B 1 HETATM 8 C C3B FAD . . . D 2 6.868 84.189 113.885 1 50.81 ? C3B FAD 401 B 1 HETATM 9 O O3B FAD . . . D 2 6.801 85.464 114.515 1 52.61 ? O3B FAD 401 B 1 HETATM 10 C C2B FAD . . . D 2 5.651 83.312 114.199 1 50.3 ? C2B FAD 401 B 1 HETATM 11 O O2B FAD . . . D 2 5.149 83.56 115.506 1 48.77 ? O2B FAD 401 B 1 HETATM 12 C C1B FAD . . . D 2 4.67 83.793 113.136 1 51.8 ? C1B FAD 401 B 1 HETATM 13 N N9A FAD . . . D 2 3.622 82.844 112.782 1 56.07 ? N9A FAD 401 B 1 HETATM 14 C C8A FAD . . . D 2 3.71 81.48 112.695 1 57.62 ? C8A FAD 401 B 1 HETATM 15 N N7A FAD . . . D 2 2.593 80.897 112.328 1 58.73 ? N7A FAD 401 B 1 HETATM 16 C C5A FAD . . . D 2 1.711 81.953 112.158 1 56.08 ? C5A FAD 401 B 1 HETATM 17 C C6A FAD . . . D 2 0.358 82.011 111.773 1 54.63 ? C6A FAD 401 B 1 HETATM 18 N N6A FAD . . . D 2 -0.38 80.938 111.479 1 51.6 ? N6A FAD 401 B 1 HETATM 19 N N1A FAD . . . D 2 -0.221 83.23 111.699 1 54.72 ? N1A FAD 401 B 1 HETATM 20 C C2A FAD . . . D 2 0.506 84.311 111.991 1 53.46 ? C2A FAD 401 B 1 HETATM 21 N N3A FAD . . . D 2 1.786 84.376 112.362 1 53.02 ? N3A FAD 401 B 1 HETATM 22 C C4A FAD . . . D 2 2.334 83.159 112.428 1 56 ? C4A FAD 401 B 1 HETATM 23 N N1 FAD . . . D 2 19.821 81.723 111.112 1 58.66 ? N1 FAD 401 B 1 HETATM 24 C C2 FAD . . . D 2 20.903 82.552 111.085 1 62.8 ? C2 FAD 401 B 1 HETATM 25 O O2 FAD . . . D 2 21.004 83.457 110.255 1 64.64 ? O2 FAD 401 B 1 HETATM 26 N N3 FAD . . . D 2 21.927 82.382 111.997 1 63.59 ? N3 FAD 401 B 1 HETATM 27 C C4 FAD . . . D 2 21.976 81.424 112.978 1 62.6 ? C4 FAD 401 B 1 HETATM 28 O O4 FAD . . . D 2 22.943 81.364 113.735 1 64.35 ? O4 FAD 401 B 1 HETATM 29 C C4X FAD . . . D 2 20.822 80.55 113.004 1 58.41 ? C4X FAD 401 B 1 HETATM 30 N N5 FAD . . . D 2 20.79 79.618 113.898 1 54.3 ? N5 FAD 401 B 1 HETATM 31 C C5X FAD . . . D 2 19.692 78.784 113.93 1 52.27 ? C5X FAD 401 B 1 HETATM 32 C C6 FAD . . . D 2 19.658 77.781 114.893 1 52.9 ? C6 FAD 401 B 1 HETATM 33 C C7 FAD . . . D 2 18.583 76.905 114.976 1 52.7 ? C7 FAD 401 B 1 HETATM 34 C C7M FAD . . . D 2 18.588 75.837 116.037 1 52.76 ? C7M FAD 401 B 1 HETATM 35 C C8 FAD . . . D 2 17.513 77.033 114.075 1 50.87 ? C8 FAD 401 B 1 HETATM 36 C C8M FAD . . . D 2 16.328 76.105 114.139 1 50.28 ? C8M FAD 401 B 1 HETATM 37 C C9 FAD . . . D 2 17.543 78.041 113.113 1 50.47 ? C9 FAD 401 B 1 HETATM 38 C C9A FAD . . . D 2 18.624 78.914 113.03 1 52.08 ? C9A FAD 401 B 1 HETATM 39 N N10 FAD . . . D 2 18.704 79.941 112.061 1 55.38 ? N10 FAD 401 B 1 HETATM 40 C C10 FAD . . . D 2 19.789 80.782 112.028 1 57.24 ? C10 FAD 401 B 1 HETATM 41 C C1' FAD . . . D 2 17.612 80.169 111.096 1 54.93 ? C1' FAD 401 B 1 HETATM 42 C C2' FAD . . . D 2 16.887 81.506 111.345 1 53.08 ? C2' FAD 401 B 1 HETATM 43 O O2' FAD . . . D 2 16.462 81.606 112.707 1 54.02 ? O2' FAD 401 B 1 HETATM 44 C C3' FAD . . . D 2 15.663 81.613 110.433 1 50.47 ? C3' FAD 401 B 1 HETATM 45 O O3' FAD . . . D 2 16.068 81.381 109.092 1 49.29 ? O3' FAD 401 B 1 HETATM 46 C C4' FAD . . . D 2 14.983 82.983 110.506 1 50.24 ? C4' FAD 401 B 1 HETATM 47 O O4' FAD . . . D 2 14.422 83.157 111.808 1 46.46 ? O4' FAD 401 B 1 HETATM 48 C C5' FAD . . . D 2 13.915 83.165 109.448 1 50.78 ? C5' FAD 401 B 1 HETATM 49 O O5' FAD . . . D 2 12.843 83.962 109.993 1 47.18 ? O5' FAD 401 B 1 HETATM 50 P P FAD . . . D 2 11.416 83.991 109.321 1 47.82 ? P FAD 401 B 1 HETATM 51 O O1P FAD . . . D 2 10.793 85.37 109.556 1 50.72 -1 O1P FAD 401 B 1 HETATM 52 O O2P FAD . . . D 2 11.466 83.61 107.898 1 45.45 ? O2P FAD 401 B 1 HETATM 53 O O3P FAD . . . D 2 10.576 82.916 110.138 1 45.56 ? O3P FAD 401 B 1 HETATM 54 H H51A FAD . . . D 2 7.646 82.528 111.933 1 59.67 ? H51A FAD 401 B 1 HETATM 55 H H52A FAD . . . D 2 7.576 83.444 110.705 1 59.67 ? H52A FAD 401 B 1 HETATM 56 H H4B FAD . . . D 2 6.975 85.221 112.135 1 60.8 ? H4B FAD 401 B 1 HETATM 57 H H3B FAD . . . D 2 7.652 83.739 114.14 1 60.92 ? H3B FAD 401 B 1 HETATM 58 H HO3A FAD . . . D 2 6.186 85.913 114.179 1 63.08 ? HO3A FAD 401 B 1 HETATM 59 H H2B FAD . . . D 2 5.846 82.4 114.084 1 60.31 ? H2B FAD 401 B 1 HETATM 60 H HO2A FAD . . . D 2 4.923 84.358 115.568 1 58.47 ? HO2A FAD 401 B 1 HETATM 61 H H1B FAD . . . D 2 4.27 84.588 113.434 1 62.11 ? H1B FAD 401 B 1 HETATM 62 H H8A FAD . . . D 2 4.489 81.009 112.882 1 69.1 ? H8A FAD 401 B 1 HETATM 63 H H61A FAD . . . D 2 -0.025 80.147 111.511 1 61.87 ? H61A FAD 401 B 1 HETATM 64 H H62A FAD . . . D 2 -1.214 81.033 111.254 1 61.87 ? H62A FAD 401 B 1 HETATM 65 H H2A FAD . . . D 2 0.065 85.125 111.925 1 64.1 ? H2A FAD 401 B 1 HETATM 66 H HN3 FAD . . . D 2 22.599 82.927 111.943 1 76.26 ? HN3 FAD 401 B 1 HETATM 67 H H6 FAD . . . D 2 20.426 77.816 115.415 1 63.42 ? H6 FAD 401 B 1 HETATM 68 H HM71 FAD . . . D 2 17.705 75.641 116.288 1 63.26 ? HM71 FAD 401 B 1 HETATM 69 H HM72 FAD . . . D 2 19.066 76.143 116.786 1 63.26 ? HM72 FAD 401 B 1 HETATM 70 H HM73 FAD . . . D 2 18.997 75.062 115.7 1 63.26 ? HM73 FAD 401 B 1 HETATM 71 H HM81 FAD . . . D 2 15.6 76.495 113.693 1 60.29 ? HM81 FAD 401 B 1 HETATM 72 H HM82 FAD . . . D 2 16.099 75.951 115.037 1 60.29 ? HM82 FAD 401 B 1 HETATM 73 H HM83 FAD . . . D 2 16.547 75.289 113.728 1 60.29 ? HM83 FAD 401 B 1 HETATM 74 H H9 FAD . . . D 2 16.939 77.744 112.473 1 60.51 ? H9 FAD 401 B 1 HETATM 75 H "H1'1" FAD . . . D 2 16.99 79.47 111.171 1 65.87 ? "H1'1" FAD 401 B 1 HETATM 76 H "H1'2" FAD . . . D 2 17.971 80.177 110.229 1 65.87 ? "H1'2" FAD 401 B 1 HETATM 77 H H2' FAD . . . D 2 17.482 82.207 111.15 1 63.65 ? H2' FAD 401 B 1 HETATM 78 H HO2' FAD . . . D 2 16.087 80.897 112.931 1 64.78 ? HO2' FAD 401 B 1 HETATM 79 H H3' FAD . . . D 2 15.045 80.948 110.673 1 60.52 ? H3' FAD 401 B 1 HETATM 80 H HO3' FAD . . . D 2 15.394 81.341 108.606 1 59.1 ? HO3' FAD 401 B 1 HETATM 81 H H4' FAD . . . D 2 15.638 83.643 110.373 1 60.24 ? H4' FAD 401 B 1 HETATM 82 H HO4' FAD . . . D 2 13.692 82.759 111.852 1 55.7 ? HO4' FAD 401 B 1 HETATM 83 H "H5'1" FAD . . . D 2 13.583 82.326 109.189 1 60.89 ? "H5'1" FAD 401 B 1 HETATM 84 H "H5'2" FAD . . . D 2 14.283 83.601 108.702 1 60.89 ? "H5'2" FAD 401 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 84 #