data_6WGH # _model_server_result.job_id 2dzqUz_Ck7VcH29Z0yPJPA _model_server_result.datetime_utc '2025-03-13 21:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6WGH # _exptl.entry_id 6WGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.77 _cell.angle_gamma 90 _cell.entry_id 6WGH _cell.length_a 40.46 _cell.length_b 45.96 _cell.length_c 89.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 G MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 C MG MG . A MG 201 1_555 E OA1 FLC . A FLC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 C MG MG . A MG 201 1_555 E OB1 FLC . A FLC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 C MG MG . A MG 201 1_555 E OHB FLC . A FLC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 C MG MG . A MG 201 1_555 J O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 C MG MG . A MG 201 1_555 J O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 C MG MG . A MG 201 1_555 J O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 D O2B GDP . A GDP 202 1_555 G MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc9 G MG MG . A MG 205 1_555 J O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc10 G MG MG . A MG 205 1_555 J O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc11 G MG MG . A MG 205 1_555 J O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc12 G MG MG . A MG 205 1_555 J O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc13 B OG SER 18 B SER 17 1_555 H MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 H MG MG . B MG 201 1_555 I O2B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc15 H MG MG . B MG 201 1_555 K O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc16 H MG MG . B MG 201 1_555 K O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc17 H MG MG . B MG 201 1_555 K O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc18 H MG MG . B MG 201 1_555 K O HOH . B HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 191 n n C1 C2 GOL sing 192 n n C1 H11 GOL sing 193 n n C1 H12 GOL sing 194 n n O1 HO1 GOL sing 195 n n C2 O2 GOL sing 196 n n C2 C3 GOL sing 197 n n C2 H2 GOL sing 198 n n O2 HO2 GOL sing 199 n n C3 O3 GOL sing 200 n n C3 H31 GOL sing 201 n n C3 H32 GOL sing 202 n n O3 HO3 GOL sing 203 n n # _atom_sites.entry_id 6WGH _atom_sites.fract_transf_matrix[1][1] 0.024716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004254 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 2 MG MG . D 3 GDP A 1 202 1 GDP GDP . E 4 FLC A 1 203 201 FLC FLC . F 5 GOL A 1 204 301 GOL GOL . G 2 MG A 1 205 1 MG MG . H 2 MG B 1 201 1 MG MG . I 3 GDP B 1 202 1 GDP GDP . J 6 HOH A 1 301 63 HOH HOH . J 6 HOH A 2 302 89 HOH HOH . J 6 HOH A 3 303 36 HOH HOH . J 6 HOH A 4 304 154 HOH HOH . J 6 HOH A 5 305 104 HOH HOH . J 6 HOH A 6 306 1 HOH HOH . J 6 HOH A 7 307 59 HOH HOH . J 6 HOH A 8 308 170 HOH HOH . J 6 HOH A 9 309 82 HOH HOH . J 6 HOH A 10 310 159 HOH HOH . J 6 HOH A 11 311 4 HOH HOH . J 6 HOH A 12 312 44 HOH HOH . J 6 HOH A 13 313 163 HOH HOH . J 6 HOH A 14 314 128 HOH HOH . J 6 HOH A 15 315 131 HOH HOH . J 6 HOH A 16 316 10 HOH HOH . J 6 HOH A 17 317 120 HOH HOH . J 6 HOH A 18 318 25 HOH HOH . J 6 HOH A 19 319 35 HOH HOH . J 6 HOH A 20 320 97 HOH HOH . J 6 HOH A 21 321 5 HOH HOH . J 6 HOH A 22 322 22 HOH HOH . J 6 HOH A 23 323 107 HOH HOH . J 6 HOH A 24 324 137 HOH HOH . J 6 HOH A 25 325 79 HOH HOH . J 6 HOH A 26 326 99 HOH HOH . J 6 HOH A 27 327 30 HOH HOH . J 6 HOH A 28 328 122 HOH HOH . J 6 HOH A 29 329 9 HOH HOH . J 6 HOH A 30 330 125 HOH HOH . J 6 HOH A 31 331 28 HOH HOH . J 6 HOH A 32 332 70 HOH HOH . J 6 HOH A 33 333 47 HOH HOH . J 6 HOH A 34 334 31 HOH HOH . J 6 HOH A 35 335 121 HOH HOH . J 6 HOH A 36 336 146 HOH HOH . J 6 HOH A 37 337 87 HOH HOH . J 6 HOH A 38 338 153 HOH HOH . J 6 HOH A 39 339 115 HOH HOH . J 6 HOH A 40 340 81 HOH HOH . J 6 HOH A 41 341 93 HOH HOH . J 6 HOH A 42 342 127 HOH HOH . J 6 HOH A 43 343 165 HOH HOH . J 6 HOH A 44 344 14 HOH HOH . J 6 HOH A 45 345 101 HOH HOH . J 6 HOH A 46 346 49 HOH HOH . J 6 HOH A 47 347 17 HOH HOH . J 6 HOH A 48 348 34 HOH HOH . J 6 HOH A 49 349 42 HOH HOH . J 6 HOH A 50 350 168 HOH HOH . J 6 HOH A 51 351 68 HOH HOH . J 6 HOH A 52 352 157 HOH HOH . J 6 HOH A 53 353 53 HOH HOH . J 6 HOH A 54 354 29 HOH HOH . J 6 HOH A 55 355 55 HOH HOH . J 6 HOH A 56 356 161 HOH HOH . J 6 HOH A 57 357 100 HOH HOH . J 6 HOH A 58 358 145 HOH HOH . J 6 HOH A 59 359 103 HOH HOH . J 6 HOH A 60 360 117 HOH HOH . J 6 HOH A 61 361 158 HOH HOH . J 6 HOH A 62 362 86 HOH HOH . J 6 HOH A 63 363 91 HOH HOH . J 6 HOH A 64 364 46 HOH HOH . J 6 HOH A 65 365 184 HOH HOH . J 6 HOH A 66 366 150 HOH HOH . J 6 HOH A 67 367 155 HOH HOH . J 6 HOH A 68 368 67 HOH HOH . J 6 HOH A 69 369 113 HOH HOH . J 6 HOH A 70 370 151 HOH HOH . J 6 HOH A 71 371 134 HOH HOH . J 6 HOH A 72 372 169 HOH HOH . J 6 HOH A 73 373 167 HOH HOH . J 6 HOH A 74 374 140 HOH HOH . K 6 HOH B 1 301 114 HOH HOH . K 6 HOH B 2 302 142 HOH HOH . K 6 HOH B 3 303 148 HOH HOH . K 6 HOH B 4 304 27 HOH HOH . K 6 HOH B 5 305 71 HOH HOH . K 6 HOH B 6 306 85 HOH HOH . K 6 HOH B 7 307 123 HOH HOH . K 6 HOH B 8 308 92 HOH HOH . K 6 HOH B 9 309 132 HOH HOH . K 6 HOH B 10 310 94 HOH HOH . K 6 HOH B 11 311 39 HOH HOH . K 6 HOH B 12 312 98 HOH HOH . K 6 HOH B 13 313 164 HOH HOH . K 6 HOH B 14 314 78 HOH HOH . K 6 HOH B 15 315 2 HOH HOH . K 6 HOH B 16 316 3 HOH HOH . K 6 HOH B 17 317 177 HOH HOH . K 6 HOH B 18 318 75 HOH HOH . K 6 HOH B 19 319 73 HOH HOH . K 6 HOH B 20 320 65 HOH HOH . K 6 HOH B 21 321 56 HOH HOH . K 6 HOH B 22 322 95 HOH HOH . K 6 HOH B 23 323 12 HOH HOH . K 6 HOH B 24 324 45 HOH HOH . K 6 HOH B 25 325 13 HOH HOH . K 6 HOH B 26 326 21 HOH HOH . K 6 HOH B 27 327 19 HOH HOH . K 6 HOH B 28 328 105 HOH HOH . K 6 HOH B 29 329 118 HOH HOH . K 6 HOH B 30 330 106 HOH HOH . K 6 HOH B 31 331 111 HOH HOH . K 6 HOH B 32 332 33 HOH HOH . K 6 HOH B 33 333 11 HOH HOH . K 6 HOH B 34 334 8 HOH HOH . K 6 HOH B 35 335 6 HOH HOH . K 6 HOH B 36 336 141 HOH HOH . K 6 HOH B 37 337 16 HOH HOH . K 6 HOH B 38 338 96 HOH HOH . K 6 HOH B 39 339 143 HOH HOH . K 6 HOH B 40 340 24 HOH HOH . K 6 HOH B 41 341 77 HOH HOH . K 6 HOH B 42 342 7 HOH HOH . K 6 HOH B 43 343 15 HOH HOH . K 6 HOH B 44 344 171 HOH HOH . K 6 HOH B 45 345 183 HOH HOH . K 6 HOH B 46 346 129 HOH HOH . K 6 HOH B 47 347 20 HOH HOH . K 6 HOH B 48 348 83 HOH HOH . K 6 HOH B 49 349 109 HOH HOH . K 6 HOH B 50 350 80 HOH HOH . K 6 HOH B 51 351 175 HOH HOH . K 6 HOH B 52 352 102 HOH HOH . K 6 HOH B 53 353 147 HOH HOH . K 6 HOH B 54 354 40 HOH HOH . K 6 HOH B 55 355 116 HOH HOH . K 6 HOH B 56 356 58 HOH HOH . K 6 HOH B 57 357 152 HOH HOH . K 6 HOH B 58 358 178 HOH HOH . K 6 HOH B 59 359 72 HOH HOH . K 6 HOH B 60 360 176 HOH HOH . K 6 HOH B 61 361 156 HOH HOH . K 6 HOH B 62 362 57 HOH HOH . K 6 HOH B 63 363 130 HOH HOH . K 6 HOH B 64 364 43 HOH HOH . K 6 HOH B 65 365 90 HOH HOH . K 6 HOH B 66 366 124 HOH HOH . K 6 HOH B 67 367 62 HOH HOH . K 6 HOH B 68 368 48 HOH HOH . K 6 HOH B 69 369 66 HOH HOH . K 6 HOH B 70 370 162 HOH HOH . K 6 HOH B 71 371 108 HOH HOH . K 6 HOH B 72 372 136 HOH HOH . K 6 HOH B 73 373 32 HOH HOH . K 6 HOH B 74 374 18 HOH HOH . K 6 HOH B 75 375 110 HOH HOH . K 6 HOH B 76 376 41 HOH HOH . K 6 HOH B 77 377 26 HOH HOH . K 6 HOH B 78 378 51 HOH HOH . K 6 HOH B 79 379 112 HOH HOH . K 6 HOH B 80 380 135 HOH HOH . K 6 HOH B 81 381 52 HOH HOH . K 6 HOH B 82 382 37 HOH HOH . K 6 HOH B 83 383 23 HOH HOH . K 6 HOH B 84 384 60 HOH HOH . K 6 HOH B 85 385 174 HOH HOH . K 6 HOH B 86 386 54 HOH HOH . K 6 HOH B 87 387 38 HOH HOH . K 6 HOH B 88 388 133 HOH HOH . K 6 HOH B 89 389 76 HOH HOH . K 6 HOH B 90 390 166 HOH HOH . K 6 HOH B 91 391 69 HOH HOH . K 6 HOH B 92 392 119 HOH HOH . K 6 HOH B 93 393 88 HOH HOH . K 6 HOH B 94 394 139 HOH HOH . K 6 HOH B 95 395 173 HOH HOH . K 6 HOH B 96 396 126 HOH HOH . K 6 HOH B 97 397 61 HOH HOH . K 6 HOH B 98 398 149 HOH HOH . K 6 HOH B 99 399 182 HOH HOH . K 6 HOH B 100 400 179 HOH HOH . K 6 HOH B 101 401 180 HOH HOH . K 6 HOH B 102 402 172 HOH HOH . K 6 HOH B 103 403 74 HOH HOH . K 6 HOH B 104 404 160 HOH HOH . K 6 HOH B 105 405 181 HOH HOH . K 6 HOH B 106 406 138 HOH HOH . K 6 HOH B 107 407 50 HOH HOH . K 6 HOH B 108 408 64 HOH HOH . K 6 HOH B 109 409 185 HOH HOH . K 6 HOH B 110 410 84 HOH HOH . K 6 HOH B 111 411 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -18.081 0.749 -2.166 1 58.93 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . F 5 -17.692 -0.077 -3.217 1 52.72 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . F 5 -19.614 0.623 -2.048 1 62.03 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . F 5 -20.278 1.474 -2.927 1 55.51 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . F 5 -19.924 0.947 -0.571 1 44.35 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . F 5 -20.345 2.278 -0.535 1 63.04 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #