data_6WH4 # _model_server_result.job_id ykAXaqFu6Qy9F-TjS7smdg _model_server_result.datetime_utc '2024-11-24 08:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 6WH4 # _exptl.entry_id 6WH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.548 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WH4 _cell.length_a 82.38 _cell.length_b 177.31 _cell.length_c 280.59 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H 1 1 B,I,J,K 2 1 C,L,M,N,O,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 I N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 A CYS 148 1_555 A SG CYS 188 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? disulf ? disulf2 A SG CYS 371 A CYS 349 1_555 A SG CYS 375 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 109 B CYS 148 1_555 B SG CYS 188 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 371 B CYS 349 1_555 B SG CYS 375 B CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 C SG CYS 109 C CYS 148 1_555 C SG CYS 188 C CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 C SG CYS 371 C CYS 349 1_555 C SG CYS 375 C CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C20 H24 N2 S2' _chem_comp.formula_weight 356.548 _chem_comp.id 89F _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Methiothepin;Metitepine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C15 89F doub 38 n y C19 C16 89F sing 39 n y C15 C13 89F sing 40 n y C16 C10 89F doub 41 n y C5 N2 89F sing 42 n n N2 C18 89F sing 43 n n N2 C11 89F sing 44 n n C18 C14 89F sing 45 n n C14 N1 89F sing 46 n n C13 C7 89F doub 47 n y C10 C7 89F sing 48 n y C10 C20 89F sing 49 n n C7 S2 89F sing 50 n n C20 C6 89F sing 51 n n C11 C17 89F sing 52 n n C17 N1 89F sing 53 n n N1 C6 89F sing 54 n n C6 C2 89F sing 55 n n S2 C1 89F sing 56 n n C2 C1 89F doub 57 n y C2 C9 89F sing 58 n y C1 C3 89F sing 59 n y C9 C12 89F doub 60 n y C3 C4 89F doub 61 n y C12 C4 89F sing 62 n y C12 S1 89F sing 63 n n S1 C8 89F sing 64 n n C6 H1 89F sing 65 n n C9 H2 89F sing 66 n n C4 H3 89F sing 67 n n C3 H6 89F sing 68 n n C5 H7 89F sing 69 n n C5 H8 89F sing 70 n n C5 H9 89F sing 71 n n C8 H10 89F sing 72 n n C8 H11 89F sing 73 n n C8 H12 89F sing 74 n n C11 H13 89F sing 75 n n C11 H14 89F sing 76 n n C13 H15 89F sing 77 n n C14 H16 89F sing 78 n n C14 H17 89F sing 79 n n C15 H18 89F sing 80 n n C16 H19 89F sing 81 n n C17 H20 89F sing 82 n n C17 H21 89F sing 83 n n C18 H22 89F sing 84 n n C18 H23 89F sing 85 n n C19 H24 89F sing 86 n n C20 H25 89F sing 87 n n C20 H26 89F sing 88 n n # _atom_sites.entry_id 6WH4 _atom_sites.fract_transf_matrix[1][1] 0.012139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 89F A 1 1201 11 89F 89F . E 3 OLA A 1 1202 111 OLA OLA . F 3 OLA A 1 1203 211 OLA OLA . G 4 CLR A 1 1204 1301 CLR CLR . H 5 PEG A 1 1205 1401 PEG PEG . I 2 89F B 1 1201 12 89F 89F . J 5 PEG B 1 1202 711 PEG PEG . K 3 OLA B 1 1203 1011 OLA OLA . L 2 89F C 1 1201 13 89F 89F . M 4 CLR C 1 1202 1711 CLR CLR . N 5 PEG C 1 1203 1811 PEG PEG . O 5 PEG C 1 1204 1911 PEG PEG . P 6 NDS C 1 1205 2111 NDS NDS . Q 3 OLA C 1 1206 2211 OLA OLA . R 7 1PE C 1 1207 2411 1PE 1PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 89F . . . I 2 6.645 4.458 49.705 1 46.6 ? C7 89F 1201 B 1 HETATM 2 C C6 89F . . . I 2 7.131 3.165 52.391 1 44.19 ? C6 89F 1201 B 1 HETATM 3 C C10 89F . . . I 2 6.409 3.086 49.904 1 43.76 ? C10 89F 1201 B 1 HETATM 4 C C9 89F . . . I 2 5.301 3.915 53.99 1 48.88 ? C9 89F 1201 B 1 HETATM 5 C C4 89F . . . I 2 4.332 6.107 53.802 1 49.11 ? C4 89F 1201 B 1 HETATM 6 C C2 89F . . . I 2 6.138 4.18 52.914 1 49.31 ? C2 89F 1201 B 1 HETATM 7 N N1 89F . . . I 2 7.552 2.285 53.497 1 38.4 ? N1 89F 1201 B 1 HETATM 8 N N2 89F . . . I 2 9.638 0.698 54.686 1 46.63 ? N2 89F 1201 B 1 HETATM 9 C C1 89F . . . I 2 6.071 5.426 52.29 1 52.42 ? C1 89F 1201 B 1 HETATM 10 C C3 89F . . . I 2 5.169 6.391 52.735 1 49.35 ? C3 89F 1201 B 1 HETATM 11 C C5 89F . . . I 2 10.178 -0.141 55.749 1 52.34 ? C5 89F 1201 B 1 HETATM 12 C C8 89F . . . I 2 4.354 3.359 56.767 1 46.99 ? C8 89F 1201 B 1 HETATM 13 C C11 89F . . . I 2 9.257 1.985 55.24 1 50.88 ? C11 89F 1201 B 1 HETATM 14 C C12 89F . . . I 2 4.394 4.87 54.44 1 50.91 ? C12 89F 1201 B 1 HETATM 15 C C13 89F . . . I 2 6.442 4.998 48.437 1 44.2 ? C13 89F 1201 B 1 HETATM 16 C C14 89F . . . I 2 7.893 0.951 53.009 1 37.86 ? C14 89F 1201 B 1 HETATM 17 C C15 89F . . . I 2 6.017 4.226 47.381 1 37.42 ? C15 89F 1201 B 1 HETATM 18 C C16 89F . . . I 2 5.982 2.337 48.81 1 36.83 ? C16 89F 1201 B 1 HETATM 19 C C17 89F . . . I 2 8.713 2.875 54.157 1 46.18 ? C17 89F 1201 B 1 HETATM 20 C C18 89F . . . I 2 8.447 0.088 54.111 1 43.83 ? C18 89F 1201 B 1 HETATM 21 C C19 89F . . . I 2 5.782 2.893 47.571 1 34.33 ? C19 89F 1201 B 1 HETATM 22 C C20 89F . . . I 2 6.574 2.363 51.223 1 43.9 ? C20 89F 1201 B 1 HETATM 23 S S1 89F . . . I 2 3.349 4.482 55.804 1 43.81 ? S1 89F 1201 B 1 HETATM 24 S S2 89F . . . I 2 7.202 5.638 50.929 1 55.07 ? S2 89F 1201 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #