data_6WH4
#
_model_server_result.job_id            kExmj4H8tW8LtYUsLojq6Q 
_model_server_result.datetime_utc      '2024-11-28 01:56:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wh4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1201}' 
#
_entry.id    6WH4 
#
_exptl.entry_id    6WH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.548 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WH4 
_cell.length_a            82.38 
_cell.length_b            177.31 
_cell.length_c            280.59 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H 1 1 
B,I,J,K 2 1 
C,L,M,N,O,P,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 I N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 109 A CYS 148 1_555 A SG CYS 188 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
disulf ? disulf2 A SG CYS 371 A CYS 349 1_555 A SG CYS 375 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 109 B CYS 148 1_555 B SG CYS 188 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf4 B SG CYS 371 B CYS 349 1_555 B SG CYS 375 B CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf5 C SG CYS 109 C CYS 148 1_555 C SG CYS 188 C CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 C SG CYS 371 C CYS 349 1_555 C SG CYS 375 C CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C20 H24 N2 S2' 
_chem_comp.formula_weight    356.548 
_chem_comp.id                89F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Methiothepin;Metitepine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C15 89F doub 38 n y 
C19 C16 89F sing 39 n y 
C15 C13 89F sing 40 n y 
C16 C10 89F doub 41 n y 
C5 N2 89F sing 42 n n 
N2 C18 89F sing 43 n n 
N2 C11 89F sing 44 n n 
C18 C14 89F sing 45 n n 
C14 N1 89F sing 46 n n 
C13 C7 89F doub 47 n y 
C10 C7 89F sing 48 n y 
C10 C20 89F sing 49 n n 
C7 S2 89F sing 50 n n 
C20 C6 89F sing 51 n n 
C11 C17 89F sing 52 n n 
C17 N1 89F sing 53 n n 
N1 C6 89F sing 54 n n 
C6 C2 89F sing 55 n n 
S2 C1 89F sing 56 n n 
C2 C1 89F doub 57 n y 
C2 C9 89F sing 58 n y 
C1 C3 89F sing 59 n y 
C9 C12 89F doub 60 n y 
C3 C4 89F doub 61 n y 
C12 C4 89F sing 62 n y 
C12 S1 89F sing 63 n n 
S1 C8 89F sing 64 n n 
C6 H1 89F sing 65 n n 
C9 H2 89F sing 66 n n 
C4 H3 89F sing 67 n n 
C3 H6 89F sing 68 n n 
C5 H7 89F sing 69 n n 
C5 H8 89F sing 70 n n 
C5 H9 89F sing 71 n n 
C8 H10 89F sing 72 n n 
C8 H11 89F sing 73 n n 
C8 H12 89F sing 74 n n 
C11 H13 89F sing 75 n n 
C11 H14 89F sing 76 n n 
C13 H15 89F sing 77 n n 
C14 H16 89F sing 78 n n 
C14 H17 89F sing 79 n n 
C15 H18 89F sing 80 n n 
C16 H19 89F sing 81 n n 
C17 H20 89F sing 82 n n 
C17 H21 89F sing 83 n n 
C18 H22 89F sing 84 n n 
C18 H23 89F sing 85 n n 
C19 H24 89F sing 86 n n 
C20 H25 89F sing 87 n n 
C20 H26 89F sing 88 n n 
#
_atom_sites.entry_id                     6WH4 
_atom_sites.fract_transf_matrix[1][1]    0.012139 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00564 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 89F A 1 1201 11 89F 89F . 
E 3 OLA A 1 1202 111 OLA OLA . 
F 3 OLA A 1 1203 211 OLA OLA . 
G 4 CLR A 1 1204 1301 CLR CLR . 
H 5 PEG A 1 1205 1401 PEG PEG . 
I 2 89F B 1 1201 12 89F 89F . 
J 5 PEG B 1 1202 711 PEG PEG . 
K 3 OLA B 1 1203 1011 OLA OLA . 
L 2 89F C 1 1201 13 89F 89F . 
M 4 CLR C 1 1202 1711 CLR CLR . 
N 5 PEG C 1 1203 1811 PEG PEG . 
O 5 PEG C 1 1204 1911 PEG PEG . 
P 6 NDS C 1 1205 2111 NDS NDS . 
Q 3 OLA C 1 1206 2211 OLA OLA . 
R 7 1PE C 1 1207 2411 1PE 1PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 89F . . . L 2 22.572 -35.801 49.213 1 19.77 ? C7 89F 1201 C 1 
HETATM 2 C C6 89F . . . L 2 23.896 -36.144 52.072 1 21.22 ? C6 89F 1201 C 1 
HETATM 3 C C10 89F . . . L 2 23.49 -36.821 49.509 1 18.4 ? C10 89F 1201 C 1 
HETATM 4 C C9 89F . . . L 2 21.969 -36.768 53.614 1 21.61 ? C9 89F 1201 C 1 
HETATM 5 C C4 89F . . . L 2 19.735 -35.96 53.259 1 17.85 ? C4 89F 1201 C 1 
HETATM 6 C C2 89F . . . L 2 22.431 -36.098 52.489 1 21.16 ? C2 89F 1201 C 1 
HETATM 7 N N1 89F . . . L 2 24.753 -36.555 53.218 1 16.01 ? N1 89F 1201 C 1 
HETATM 8 N N2 89F . . . L 2 27.07 -36.123 54.894 1 22.7 ? N2 89F 1201 C 1 
HETATM 9 C C1 89F . . . L 2 21.51 -35.346 51.755 1 20.56 ? C1 89F 1201 C 1 
HETATM 10 C C3 89F . . . L 2 20.171 -35.285 52.137 1 19.74 ? C3 89F 1201 C 1 
HETATM 11 C C5 89F . . . L 2 27.964 -36.421 56.011 1 30.12 ? C5 89F 1201 C 1 
HETATM 12 C C8 89F . . . L 2 21.662 -37.639 56.404 1 27.23 ? C8 89F 1201 C 1 
HETATM 13 C C11 89F . . . L 2 27.011 -37.231 53.957 1 18.23 ? C11 89F 1201 C 1 
HETATM 14 C C12 89F . . . L 2 20.637 -36.707 54.002 1 20.11 ? C12 89F 1201 C 1 
HETATM 15 C C13 89F . . . L 2 21.951 -35.744 47.97 1 19.38 ? C13 89F 1201 C 1 
HETATM 16 C C14 89F . . . L 2 24.826 -35.514 54.241 1 21.9 ? C14 89F 1201 C 1 
HETATM 17 C C15 89F . . . L 2 22.219 -36.688 47.01 1 21.59 ? C15 89F 1201 C 1 
HETATM 18 C C16 89F . . . L 2 23.731 -37.76 48.512 1 20.07 ? C16 89F 1201 C 1 
HETATM 19 C C17 89F . . . L 2 26.11 -36.898 52.797 1 17.59 ? C17 89F 1201 C 1 
HETATM 20 C C18 89F . . . L 2 25.721 -35.914 55.385 1 25.95 ? C18 89F 1201 C 1 
HETATM 21 C C19 89F . . . L 2 23.104 -37.701 47.286 1 22.88 ? C19 89F 1201 C 1 
HETATM 22 C C20 89F . . . L 2 24.221 -36.996 50.827 1 21.07 ? C20 89F 1201 C 1 
HETATM 23 S S1 89F . . . L 2 20.158 -37.588 55.44 1 29.67 ? S1 89F 1201 C 1 
HETATM 24 S S2 89F . . . L 2 22.101 -34.49 50.314 1 27.25 ? S2 89F 1201 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           708 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           24 
#