data_6WH6 # _model_server_result.job_id z2MtZIN90F9KQcuOiNZEjg _model_server_result.datetime_utc '2024-11-05 08:36:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 6WH6 # _exptl.entry_id 6WH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WH6 _cell.length_a 78.393 _cell.length_b 111.746 _cell.length_c 134.046 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 160 A LYS 200 1_555 A N CSS 161 A CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSS 161 A CSS 201 1_555 A N ALA 162 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A SD CSS 161 A CSS 201 1_555 D N CYN . A CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? covale ? covale4 A SG CYS 339 A CYS 379 1_555 D C CYN . A CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale5 B C LYS 160 B LYS 200 1_555 B N CSS 161 B CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C CSS 161 B CSS 201 1_555 B N ALA 162 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B SD CSS 161 B CSS 201 1_555 H N CYN . B CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? covale ? covale8 B SG CYS 339 B CYS 379 1_555 H C CYN . B CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 464 n n C1 C2 UQ1 sing 465 n n C1 C6 UQ1 sing 466 n n C2 O2 UQ1 sing 467 n n C2 C3 UQ1 doub 468 n n O2 CM2 UQ1 sing 469 n n CM2 HM21 UQ1 sing 470 n n CM2 HM22 UQ1 sing 471 n n CM2 HM23 UQ1 sing 472 n n C3 O3 UQ1 sing 473 n n C3 C4 UQ1 sing 474 n n O3 CM3 UQ1 sing 475 n n CM3 HM31 UQ1 sing 476 n n CM3 HM32 UQ1 sing 477 n n CM3 HM33 UQ1 sing 478 n n C4 O4 UQ1 doub 479 n n C4 C5 UQ1 sing 480 n n C5 CM5 UQ1 sing 481 n n C5 C6 UQ1 doub 482 n n CM5 HM51 UQ1 sing 483 n n CM5 HM52 UQ1 sing 484 n n CM5 HM53 UQ1 sing 485 n n C6 C7 UQ1 sing 486 n n C7 C8 UQ1 sing 487 n n C7 H71 UQ1 sing 488 n n C7 H72 UQ1 sing 489 n n C8 C9 UQ1 doub 490 n n C8 H8 UQ1 sing 491 n n C9 C10 UQ1 sing 492 n n C9 C11 UQ1 sing 493 n n C10 H101 UQ1 sing 494 n n C10 H102 UQ1 sing 495 n n C10 H103 UQ1 sing 496 n n C11 H111 UQ1 sing 497 n n C11 H112 UQ1 sing 498 n n C11 H113 UQ1 sing 499 n n # _atom_sites.entry_id 6WH6 _atom_sites.fract_transf_matrix[1][1] 0.012756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 1 FAD FAD . D 3 CYN A 1 502 1 CYN CYN . E 4 UQ1 A 1 503 1 UQ1 UQ1 . F 4 UQ1 A 1 504 3 UQ1 UQ1 . G 2 FAD B 1 501 2 FAD FAD . H 3 CYN B 1 502 2 CYN CYN . I 4 UQ1 B 1 503 4 UQ1 UQ1 . J 5 HOH A 1 601 106 HOH HOH . J 5 HOH A 2 602 105 HOH HOH . J 5 HOH A 3 603 108 HOH HOH . J 5 HOH A 4 604 107 HOH HOH . J 5 HOH A 5 605 96 HOH HOH . J 5 HOH A 6 606 33 HOH HOH . J 5 HOH A 7 607 109 HOH HOH . J 5 HOH A 8 608 103 HOH HOH . J 5 HOH A 9 609 3 HOH HOH . J 5 HOH A 10 610 48 HOH HOH . J 5 HOH A 11 611 70 HOH HOH . J 5 HOH A 12 612 69 HOH HOH . J 5 HOH A 13 613 17 HOH HOH . J 5 HOH A 14 614 72 HOH HOH . J 5 HOH A 15 615 30 HOH HOH . J 5 HOH A 16 616 2 HOH HOH . J 5 HOH A 17 617 14 HOH HOH . J 5 HOH A 18 618 39 HOH HOH . J 5 HOH A 19 619 6 HOH HOH . J 5 HOH A 20 620 19 HOH HOH . J 5 HOH A 21 621 79 HOH HOH . J 5 HOH A 22 622 112 HOH HOH . J 5 HOH A 23 623 67 HOH HOH . J 5 HOH A 24 624 50 HOH HOH . J 5 HOH A 25 625 35 HOH HOH . J 5 HOH A 26 626 104 HOH HOH . J 5 HOH A 27 627 27 HOH HOH . J 5 HOH A 28 628 16 HOH HOH . J 5 HOH A 29 629 74 HOH HOH . J 5 HOH A 30 630 13 HOH HOH . J 5 HOH A 31 631 113 HOH HOH . J 5 HOH A 32 632 86 HOH HOH . J 5 HOH A 33 633 61 HOH HOH . J 5 HOH A 34 634 52 HOH HOH . J 5 HOH A 35 635 15 HOH HOH . J 5 HOH A 36 636 98 HOH HOH . J 5 HOH A 37 637 38 HOH HOH . J 5 HOH A 38 638 41 HOH HOH . J 5 HOH A 39 639 99 HOH HOH . J 5 HOH A 40 640 51 HOH HOH . J 5 HOH A 41 641 57 HOH HOH . J 5 HOH A 42 642 101 HOH HOH . J 5 HOH A 43 643 7 HOH HOH . J 5 HOH A 44 644 114 HOH HOH . J 5 HOH A 45 645 29 HOH HOH . J 5 HOH A 46 646 18 HOH HOH . J 5 HOH A 47 647 92 HOH HOH . J 5 HOH A 48 648 36 HOH HOH . J 5 HOH A 49 649 53 HOH HOH . J 5 HOH A 50 650 126 HOH HOH . J 5 HOH A 51 651 26 HOH HOH . J 5 HOH A 52 652 42 HOH HOH . J 5 HOH A 53 653 100 HOH HOH . J 5 HOH A 54 654 94 HOH HOH . J 5 HOH A 55 655 110 HOH HOH . J 5 HOH A 56 656 44 HOH HOH . J 5 HOH A 57 657 46 HOH HOH . J 5 HOH A 58 658 117 HOH HOH . J 5 HOH A 59 659 71 HOH HOH . J 5 HOH A 60 660 85 HOH HOH . J 5 HOH A 61 661 80 HOH HOH . J 5 HOH A 62 662 58 HOH HOH . J 5 HOH A 63 663 23 HOH HOH . J 5 HOH A 64 664 95 HOH HOH . K 5 HOH B 1 601 122 HOH HOH . K 5 HOH B 2 602 81 HOH HOH . K 5 HOH B 3 603 5 HOH HOH . K 5 HOH B 4 604 84 HOH HOH . K 5 HOH B 5 605 56 HOH HOH . K 5 HOH B 6 606 28 HOH HOH . K 5 HOH B 7 607 20 HOH HOH . K 5 HOH B 8 608 25 HOH HOH . K 5 HOH B 9 609 32 HOH HOH . K 5 HOH B 10 610 22 HOH HOH . K 5 HOH B 11 611 45 HOH HOH . K 5 HOH B 12 612 111 HOH HOH . K 5 HOH B 13 613 34 HOH HOH . K 5 HOH B 14 614 124 HOH HOH . K 5 HOH B 15 615 24 HOH HOH . K 5 HOH B 16 616 11 HOH HOH . K 5 HOH B 17 617 125 HOH HOH . K 5 HOH B 18 618 65 HOH HOH . K 5 HOH B 19 619 83 HOH HOH . K 5 HOH B 20 620 59 HOH HOH . K 5 HOH B 21 621 60 HOH HOH . K 5 HOH B 22 622 91 HOH HOH . K 5 HOH B 23 623 55 HOH HOH . K 5 HOH B 24 624 93 HOH HOH . K 5 HOH B 25 625 62 HOH HOH . K 5 HOH B 26 626 115 HOH HOH . K 5 HOH B 27 627 21 HOH HOH . K 5 HOH B 28 628 12 HOH HOH . K 5 HOH B 29 629 89 HOH HOH . K 5 HOH B 30 630 121 HOH HOH . K 5 HOH B 31 631 82 HOH HOH . K 5 HOH B 32 632 90 HOH HOH . K 5 HOH B 33 633 76 HOH HOH . K 5 HOH B 34 634 64 HOH HOH . K 5 HOH B 35 635 118 HOH HOH . K 5 HOH B 36 636 9 HOH HOH . K 5 HOH B 37 637 68 HOH HOH . K 5 HOH B 38 638 66 HOH HOH . K 5 HOH B 39 639 102 HOH HOH . K 5 HOH B 40 640 37 HOH HOH . K 5 HOH B 41 641 73 HOH HOH . K 5 HOH B 42 642 63 HOH HOH . K 5 HOH B 43 643 40 HOH HOH . K 5 HOH B 44 644 4 HOH HOH . K 5 HOH B 45 645 54 HOH HOH . K 5 HOH B 46 646 47 HOH HOH . K 5 HOH B 47 647 8 HOH HOH . K 5 HOH B 48 648 43 HOH HOH . K 5 HOH B 49 649 10 HOH HOH . K 5 HOH B 50 650 123 HOH HOH . K 5 HOH B 51 651 97 HOH HOH . K 5 HOH B 52 652 119 HOH HOH . K 5 HOH B 53 653 78 HOH HOH . K 5 HOH B 54 654 88 HOH HOH . K 5 HOH B 55 655 49 HOH HOH . K 5 HOH B 56 656 31 HOH HOH . K 5 HOH B 57 657 116 HOH HOH . K 5 HOH B 58 658 75 HOH HOH . K 5 HOH B 59 659 120 HOH HOH . K 5 HOH B 60 660 77 HOH HOH . K 5 HOH B 61 661 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . I 4 21.112 70.881 -14.873 1 63.77 ? C1 UQ1 503 B 1 HETATM 2 O O1 UQ1 . . . I 4 20.587 71.506 -15.738 1 64.98 ? O1 UQ1 503 B 1 HETATM 3 C C2 UQ1 . . . I 4 20.239 70.197 -13.825 1 61.74 ? C2 UQ1 503 B 1 HETATM 4 O O2 UQ1 . . . I 4 18.848 70.307 -13.886 1 62.07 ? O2 UQ1 503 B 1 HETATM 5 C CM2 UQ1 . . . I 4 18.289 71.328 -13.098 1 64.68 ? CM2 UQ1 503 B 1 HETATM 6 C C3 UQ1 . . . I 4 20.878 69.385 -12.704 1 63.99 ? C3 UQ1 503 B 1 HETATM 7 O O3 UQ1 . . . I 4 20.068 68.768 -11.759 1 63.93 ? O3 UQ1 503 B 1 HETATM 8 C CM3 UQ1 . . . I 4 19.911 69.538 -10.615 1 60.49 ? CM3 UQ1 503 B 1 HETATM 9 C C4 UQ1 . . . I 4 22.393 69.236 -12.589 1 65.69 ? C4 UQ1 503 B 1 HETATM 10 O O4 UQ1 . . . I 4 22.844 68.579 -11.693 1 60.49 ? O4 UQ1 503 B 1 HETATM 11 C C5 UQ1 . . . I 4 23.28 69.931 -13.642 1 63.44 ? C5 UQ1 503 B 1 HETATM 12 C CM5 UQ1 . . . I 4 24.799 69.804 -13.549 1 49.36 ? CM5 UQ1 503 B 1 HETATM 13 C C6 UQ1 . . . I 4 22.642 70.748 -14.788 1 64.18 ? C6 UQ1 503 B 1 HETATM 14 C C7 UQ1 . . . I 4 23.527 71.437 -15.835 1 63.82 ? C7 UQ1 503 B 1 HETATM 15 C C8 UQ1 . . . I 4 23.528 72.958 -15.61 1 67.79 ? C8 UQ1 503 B 1 HETATM 16 C C9 UQ1 . . . I 4 24.588 73.704 -15.884 1 63.42 ? C9 UQ1 503 B 1 HETATM 17 C C10 UQ1 . . . I 4 24.549 75.22 -15.654 1 56.69 ? C10 UQ1 503 B 1 HETATM 18 C C11 UQ1 . . . I 4 25.852 73.043 -16.435 1 60.66 ? C11 UQ1 503 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #