data_6WH6
#
_model_server_result.job_id            I9jRw4-aTRWNZUo4UaPXzQ 
_model_server_result.datetime_utc      '2024-11-23 23:53:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wh6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    6WH6 
#
_exptl.entry_id    6WH6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              250.29 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UBIQUINONE-1 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WH6 
_cell.length_a            78.393 
_cell.length_b            111.746 
_cell.length_c            134.046 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WH6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 160 A LYS 200 1_555 A N CSS 161 A CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSS 161 A CSS 201 1_555 A N ALA 162 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A SD CSS 161 A CSS 201 1_555 D N CYN . A CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
covale ? covale4 A SG CYS 339 A CYS 379 1_555 D C CYN . A CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale5 B C LYS 160 B LYS 200 1_555 B N CSS 161 B CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B C CSS 161 B CSS 201 1_555 B N ALA 162 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 B SD CSS 161 B CSS 201 1_555 H N CYN . B CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? 
covale ? covale8 B SG CYS 339 B CYS 379 1_555 H C CYN . B CYN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
#
_chem_comp.formula           'C14 H18 O4' 
_chem_comp.formula_weight    250.29 
_chem_comp.id                UQ1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UBIQUINONE-1 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 UQ1 doub 464 n n 
C1 C2 UQ1 sing 465 n n 
C1 C6 UQ1 sing 466 n n 
C2 O2 UQ1 sing 467 n n 
C2 C3 UQ1 doub 468 n n 
O2 CM2 UQ1 sing 469 n n 
CM2 HM21 UQ1 sing 470 n n 
CM2 HM22 UQ1 sing 471 n n 
CM2 HM23 UQ1 sing 472 n n 
C3 O3 UQ1 sing 473 n n 
C3 C4 UQ1 sing 474 n n 
O3 CM3 UQ1 sing 475 n n 
CM3 HM31 UQ1 sing 476 n n 
CM3 HM32 UQ1 sing 477 n n 
CM3 HM33 UQ1 sing 478 n n 
C4 O4 UQ1 doub 479 n n 
C4 C5 UQ1 sing 480 n n 
C5 CM5 UQ1 sing 481 n n 
C5 C6 UQ1 doub 482 n n 
CM5 HM51 UQ1 sing 483 n n 
CM5 HM52 UQ1 sing 484 n n 
CM5 HM53 UQ1 sing 485 n n 
C6 C7 UQ1 sing 486 n n 
C7 C8 UQ1 sing 487 n n 
C7 H71 UQ1 sing 488 n n 
C7 H72 UQ1 sing 489 n n 
C8 C9 UQ1 doub 490 n n 
C8 H8 UQ1 sing 491 n n 
C9 C10 UQ1 sing 492 n n 
C9 C11 UQ1 sing 493 n n 
C10 H101 UQ1 sing 494 n n 
C10 H102 UQ1 sing 495 n n 
C10 H103 UQ1 sing 496 n n 
C11 H111 UQ1 sing 497 n n 
C11 H112 UQ1 sing 498 n n 
C11 H113 UQ1 sing 499 n n 
#
_atom_sites.entry_id                     6WH6 
_atom_sites.fract_transf_matrix[1][1]    0.012756 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00746 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 1 FAD FAD . 
D 3 CYN A 1 502 1 CYN CYN . 
E 4 UQ1 A 1 503 1 UQ1 UQ1 . 
F 4 UQ1 A 1 504 3 UQ1 UQ1 . 
G 2 FAD B 1 501 2 FAD FAD . 
H 3 CYN B 1 502 2 CYN CYN . 
I 4 UQ1 B 1 503 4 UQ1 UQ1 . 
J 5 HOH A 1 601 106 HOH HOH . 
J 5 HOH A 2 602 105 HOH HOH . 
J 5 HOH A 3 603 108 HOH HOH . 
J 5 HOH A 4 604 107 HOH HOH . 
J 5 HOH A 5 605 96 HOH HOH . 
J 5 HOH A 6 606 33 HOH HOH . 
J 5 HOH A 7 607 109 HOH HOH . 
J 5 HOH A 8 608 103 HOH HOH . 
J 5 HOH A 9 609 3 HOH HOH . 
J 5 HOH A 10 610 48 HOH HOH . 
J 5 HOH A 11 611 70 HOH HOH . 
J 5 HOH A 12 612 69 HOH HOH . 
J 5 HOH A 13 613 17 HOH HOH . 
J 5 HOH A 14 614 72 HOH HOH . 
J 5 HOH A 15 615 30 HOH HOH . 
J 5 HOH A 16 616 2 HOH HOH . 
J 5 HOH A 17 617 14 HOH HOH . 
J 5 HOH A 18 618 39 HOH HOH . 
J 5 HOH A 19 619 6 HOH HOH . 
J 5 HOH A 20 620 19 HOH HOH . 
J 5 HOH A 21 621 79 HOH HOH . 
J 5 HOH A 22 622 112 HOH HOH . 
J 5 HOH A 23 623 67 HOH HOH . 
J 5 HOH A 24 624 50 HOH HOH . 
J 5 HOH A 25 625 35 HOH HOH . 
J 5 HOH A 26 626 104 HOH HOH . 
J 5 HOH A 27 627 27 HOH HOH . 
J 5 HOH A 28 628 16 HOH HOH . 
J 5 HOH A 29 629 74 HOH HOH . 
J 5 HOH A 30 630 13 HOH HOH . 
J 5 HOH A 31 631 113 HOH HOH . 
J 5 HOH A 32 632 86 HOH HOH . 
J 5 HOH A 33 633 61 HOH HOH . 
J 5 HOH A 34 634 52 HOH HOH . 
J 5 HOH A 35 635 15 HOH HOH . 
J 5 HOH A 36 636 98 HOH HOH . 
J 5 HOH A 37 637 38 HOH HOH . 
J 5 HOH A 38 638 41 HOH HOH . 
J 5 HOH A 39 639 99 HOH HOH . 
J 5 HOH A 40 640 51 HOH HOH . 
J 5 HOH A 41 641 57 HOH HOH . 
J 5 HOH A 42 642 101 HOH HOH . 
J 5 HOH A 43 643 7 HOH HOH . 
J 5 HOH A 44 644 114 HOH HOH . 
J 5 HOH A 45 645 29 HOH HOH . 
J 5 HOH A 46 646 18 HOH HOH . 
J 5 HOH A 47 647 92 HOH HOH . 
J 5 HOH A 48 648 36 HOH HOH . 
J 5 HOH A 49 649 53 HOH HOH . 
J 5 HOH A 50 650 126 HOH HOH . 
J 5 HOH A 51 651 26 HOH HOH . 
J 5 HOH A 52 652 42 HOH HOH . 
J 5 HOH A 53 653 100 HOH HOH . 
J 5 HOH A 54 654 94 HOH HOH . 
J 5 HOH A 55 655 110 HOH HOH . 
J 5 HOH A 56 656 44 HOH HOH . 
J 5 HOH A 57 657 46 HOH HOH . 
J 5 HOH A 58 658 117 HOH HOH . 
J 5 HOH A 59 659 71 HOH HOH . 
J 5 HOH A 60 660 85 HOH HOH . 
J 5 HOH A 61 661 80 HOH HOH . 
J 5 HOH A 62 662 58 HOH HOH . 
J 5 HOH A 63 663 23 HOH HOH . 
J 5 HOH A 64 664 95 HOH HOH . 
K 5 HOH B 1 601 122 HOH HOH . 
K 5 HOH B 2 602 81 HOH HOH . 
K 5 HOH B 3 603 5 HOH HOH . 
K 5 HOH B 4 604 84 HOH HOH . 
K 5 HOH B 5 605 56 HOH HOH . 
K 5 HOH B 6 606 28 HOH HOH . 
K 5 HOH B 7 607 20 HOH HOH . 
K 5 HOH B 8 608 25 HOH HOH . 
K 5 HOH B 9 609 32 HOH HOH . 
K 5 HOH B 10 610 22 HOH HOH . 
K 5 HOH B 11 611 45 HOH HOH . 
K 5 HOH B 12 612 111 HOH HOH . 
K 5 HOH B 13 613 34 HOH HOH . 
K 5 HOH B 14 614 124 HOH HOH . 
K 5 HOH B 15 615 24 HOH HOH . 
K 5 HOH B 16 616 11 HOH HOH . 
K 5 HOH B 17 617 125 HOH HOH . 
K 5 HOH B 18 618 65 HOH HOH . 
K 5 HOH B 19 619 83 HOH HOH . 
K 5 HOH B 20 620 59 HOH HOH . 
K 5 HOH B 21 621 60 HOH HOH . 
K 5 HOH B 22 622 91 HOH HOH . 
K 5 HOH B 23 623 55 HOH HOH . 
K 5 HOH B 24 624 93 HOH HOH . 
K 5 HOH B 25 625 62 HOH HOH . 
K 5 HOH B 26 626 115 HOH HOH . 
K 5 HOH B 27 627 21 HOH HOH . 
K 5 HOH B 28 628 12 HOH HOH . 
K 5 HOH B 29 629 89 HOH HOH . 
K 5 HOH B 30 630 121 HOH HOH . 
K 5 HOH B 31 631 82 HOH HOH . 
K 5 HOH B 32 632 90 HOH HOH . 
K 5 HOH B 33 633 76 HOH HOH . 
K 5 HOH B 34 634 64 HOH HOH . 
K 5 HOH B 35 635 118 HOH HOH . 
K 5 HOH B 36 636 9 HOH HOH . 
K 5 HOH B 37 637 68 HOH HOH . 
K 5 HOH B 38 638 66 HOH HOH . 
K 5 HOH B 39 639 102 HOH HOH . 
K 5 HOH B 40 640 37 HOH HOH . 
K 5 HOH B 41 641 73 HOH HOH . 
K 5 HOH B 42 642 63 HOH HOH . 
K 5 HOH B 43 643 40 HOH HOH . 
K 5 HOH B 44 644 4 HOH HOH . 
K 5 HOH B 45 645 54 HOH HOH . 
K 5 HOH B 46 646 47 HOH HOH . 
K 5 HOH B 47 647 8 HOH HOH . 
K 5 HOH B 48 648 43 HOH HOH . 
K 5 HOH B 49 649 10 HOH HOH . 
K 5 HOH B 50 650 123 HOH HOH . 
K 5 HOH B 51 651 97 HOH HOH . 
K 5 HOH B 52 652 119 HOH HOH . 
K 5 HOH B 53 653 78 HOH HOH . 
K 5 HOH B 54 654 88 HOH HOH . 
K 5 HOH B 55 655 49 HOH HOH . 
K 5 HOH B 56 656 31 HOH HOH . 
K 5 HOH B 57 657 116 HOH HOH . 
K 5 HOH B 58 658 75 HOH HOH . 
K 5 HOH B 59 659 120 HOH HOH . 
K 5 HOH B 60 660 77 HOH HOH . 
K 5 HOH B 61 661 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UQ1 . . . F 4 33.58 38.414 -40.546 1 45.11 ? C1 UQ1 504 A 1 
HETATM 2 O O1 UQ1 . . . F 4 34.486 37.801 -40.116 1 60.68 ? O1 UQ1 504 A 1 
HETATM 3 C C2 UQ1 . . . F 4 32.727 39.101 -39.52 1 39.78 ? C2 UQ1 504 A 1 
HETATM 4 O O2 UQ1 . . . F 4 33.004 39.006 -38.153 1 39.22 ? O2 UQ1 504 A 1 
HETATM 5 C CM2 UQ1 . . . F 4 32.19 38.099 -37.486 1 32.59 ? CM2 UQ1 504 A 1 
HETATM 6 C C3 UQ1 . . . F 4 31.563 39.907 -39.984 1 41.68 ? C3 UQ1 504 A 1 
HETATM 7 O O3 UQ1 . . . F 4 30.851 40.518 -38.973 1 53.32 ? O3 UQ1 504 A 1 
HETATM 8 C CM3 UQ1 . . . F 4 31.504 41.673 -38.504 1 58.28 ? CM3 UQ1 504 A 1 
HETATM 9 C C4 UQ1 . . . F 4 31.217 40.043 -41.463 1 41.4 ? C4 UQ1 504 A 1 
HETATM 10 O O4 UQ1 . . . F 4 30.273 40.693 -41.774 1 45.47 ? O4 UQ1 504 A 1 
HETATM 11 C C5 UQ1 . . . F 4 32.082 39.338 -42.513 1 38.69 ? C5 UQ1 504 A 1 
HETATM 12 C CM5 UQ1 . . . F 4 31.729 39.48 -43.999 1 39.12 ? CM5 UQ1 504 A 1 
HETATM 13 C C6 UQ1 . . . F 4 33.28 38.512 -42.041 1 47.54 ? C6 UQ1 504 A 1 
HETATM 14 C C7 UQ1 . . . F 4 34.274 37.816 -42.993 1 61.48 ? C7 UQ1 504 A 1 
HETATM 15 C C8 UQ1 . . . F 4 35.582 38.5 -42.503 1 59.53 ? C8 UQ1 504 A 1 
HETATM 16 C C9 UQ1 . . . F 4 36.852 38.505 -42.901 1 61.31 ? C9 UQ1 504 A 1 
HETATM 17 C C10 UQ1 . . . F 4 37.85 39.321 -42.064 1 50.01 ? C10 UQ1 504 A 1 
HETATM 18 C C11 UQ1 . . . F 4 37.36 37.765 -44.14 1 57.82 ? C11 UQ1 504 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           973 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#