data_6WHJ # _model_server_result.job_id trn1BR-wcIRL5sxFjdsQ-Q _model_server_result.datetime_utc '2024-12-27 17:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6whj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6WHJ # _exptl.entry_id 6WHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.36 _cell.angle_gamma 90 _cell.entry_id 6WHJ _cell.length_a 44.62 _cell.length_b 169.92 _cell.length_c 84.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6WHJ _atom_sites.fract_transf_matrix[1][1] 0.022411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 401 401 EDO EDO . F 2 EDO B 1 401 401 EDO EDO . G 2 EDO C 1 401 401 EDO EDO . H 3 HOH A 1 501 174 HOH HOH . H 3 HOH A 2 502 167 HOH HOH . H 3 HOH A 3 503 75 HOH HOH . H 3 HOH A 4 504 11 HOH HOH . H 3 HOH A 5 505 18 HOH HOH . H 3 HOH A 6 506 88 HOH HOH . H 3 HOH A 7 507 172 HOH HOH . H 3 HOH A 8 508 80 HOH HOH . H 3 HOH A 9 509 93 HOH HOH . H 3 HOH A 10 510 72 HOH HOH . H 3 HOH A 11 511 17 HOH HOH . H 3 HOH A 12 512 90 HOH HOH . H 3 HOH A 13 513 84 HOH HOH . H 3 HOH A 14 514 159 HOH HOH . H 3 HOH A 15 515 67 HOH HOH . H 3 HOH A 16 516 16 HOH HOH . H 3 HOH A 17 517 91 HOH HOH . H 3 HOH A 18 518 13 HOH HOH . H 3 HOH A 19 519 94 HOH HOH . H 3 HOH A 20 520 79 HOH HOH . H 3 HOH A 21 521 4 HOH HOH . H 3 HOH A 22 522 173 HOH HOH . H 3 HOH A 23 523 77 HOH HOH . H 3 HOH A 24 524 171 HOH HOH . H 3 HOH A 25 525 83 HOH HOH . H 3 HOH A 26 526 87 HOH HOH . H 3 HOH A 27 527 191 HOH HOH . H 3 HOH A 28 528 15 HOH HOH . H 3 HOH A 29 529 5 HOH HOH . H 3 HOH A 30 530 14 HOH HOH . H 3 HOH A 31 531 73 HOH HOH . H 3 HOH A 32 532 108 HOH HOH . H 3 HOH A 33 533 89 HOH HOH . H 3 HOH A 34 534 175 HOH HOH . H 3 HOH A 35 535 85 HOH HOH . H 3 HOH A 36 536 69 HOH HOH . H 3 HOH A 37 537 92 HOH HOH . H 3 HOH A 38 538 81 HOH HOH . H 3 HOH A 39 539 78 HOH HOH . H 3 HOH A 40 540 8 HOH HOH . H 3 HOH A 41 541 76 HOH HOH . H 3 HOH A 42 542 95 HOH HOH . H 3 HOH A 43 543 7 HOH HOH . H 3 HOH A 44 544 68 HOH HOH . H 3 HOH A 45 545 160 HOH HOH . H 3 HOH A 46 546 169 HOH HOH . H 3 HOH A 47 547 6 HOH HOH . H 3 HOH A 48 548 10 HOH HOH . H 3 HOH A 49 549 19 HOH HOH . H 3 HOH A 50 550 86 HOH HOH . H 3 HOH A 51 551 185 HOH HOH . I 3 HOH B 1 501 37 HOH HOH . I 3 HOH B 2 502 46 HOH HOH . I 3 HOH B 3 503 24 HOH HOH . I 3 HOH B 4 504 113 HOH HOH . I 3 HOH B 5 505 35 HOH HOH . I 3 HOH B 6 506 1 HOH HOH . I 3 HOH B 7 507 179 HOH HOH . I 3 HOH B 8 508 22 HOH HOH . I 3 HOH B 9 509 34 HOH HOH . I 3 HOH B 10 510 140 HOH HOH . I 3 HOH B 11 511 47 HOH HOH . I 3 HOH B 12 512 128 HOH HOH . I 3 HOH B 13 513 41 HOH HOH . I 3 HOH B 14 514 105 HOH HOH . I 3 HOH B 15 515 74 HOH HOH . I 3 HOH B 16 516 123 HOH HOH . I 3 HOH B 17 517 103 HOH HOH . I 3 HOH B 18 518 42 HOH HOH . I 3 HOH B 19 519 45 HOH HOH . I 3 HOH B 20 520 97 HOH HOH . I 3 HOH B 21 521 176 HOH HOH . I 3 HOH B 22 522 96 HOH HOH . I 3 HOH B 23 523 124 HOH HOH . I 3 HOH B 24 524 30 HOH HOH . I 3 HOH B 25 525 192 HOH HOH . I 3 HOH B 26 526 49 HOH HOH . I 3 HOH B 27 527 25 HOH HOH . I 3 HOH B 28 528 109 HOH HOH . I 3 HOH B 29 529 32 HOH HOH . I 3 HOH B 30 530 26 HOH HOH . I 3 HOH B 31 531 120 HOH HOH . I 3 HOH B 32 532 161 HOH HOH . I 3 HOH B 33 533 111 HOH HOH . I 3 HOH B 34 534 23 HOH HOH . I 3 HOH B 35 535 106 HOH HOH . I 3 HOH B 36 536 110 HOH HOH . I 3 HOH B 37 537 40 HOH HOH . I 3 HOH B 38 538 122 HOH HOH . I 3 HOH B 39 539 50 HOH HOH . I 3 HOH B 40 540 125 HOH HOH . I 3 HOH B 41 541 183 HOH HOH . I 3 HOH B 42 542 177 HOH HOH . I 3 HOH B 43 543 119 HOH HOH . I 3 HOH B 44 544 27 HOH HOH . I 3 HOH B 45 545 187 HOH HOH . I 3 HOH B 46 546 182 HOH HOH . I 3 HOH B 47 547 28 HOH HOH . I 3 HOH B 48 548 71 HOH HOH . I 3 HOH B 49 549 99 HOH HOH . I 3 HOH B 50 550 115 HOH HOH . I 3 HOH B 51 551 118 HOH HOH . I 3 HOH B 52 552 178 HOH HOH . I 3 HOH B 53 553 114 HOH HOH . I 3 HOH B 54 554 107 HOH HOH . I 3 HOH B 55 555 2 HOH HOH . I 3 HOH B 56 556 70 HOH HOH . I 3 HOH B 57 557 180 HOH HOH . I 3 HOH B 58 558 48 HOH HOH . I 3 HOH B 59 559 29 HOH HOH . I 3 HOH B 60 560 101 HOH HOH . I 3 HOH B 61 561 189 HOH HOH . I 3 HOH B 62 562 104 HOH HOH . I 3 HOH B 63 563 98 HOH HOH . I 3 HOH B 64 564 38 HOH HOH . I 3 HOH B 65 565 33 HOH HOH . I 3 HOH B 66 566 36 HOH HOH . I 3 HOH B 67 567 121 HOH HOH . I 3 HOH B 68 568 170 HOH HOH . I 3 HOH B 69 569 126 HOH HOH . I 3 HOH B 70 570 188 HOH HOH . I 3 HOH B 71 571 112 HOH HOH . I 3 HOH B 72 572 44 HOH HOH . I 3 HOH B 73 573 117 HOH HOH . I 3 HOH B 74 574 186 HOH HOH . I 3 HOH B 75 575 116 HOH HOH . I 3 HOH B 76 576 43 HOH HOH . I 3 HOH B 77 577 127 HOH HOH . I 3 HOH B 78 578 181 HOH HOH . J 3 HOH C 1 501 131 HOH HOH . J 3 HOH C 2 502 168 HOH HOH . J 3 HOH C 3 503 134 HOH HOH . J 3 HOH C 4 504 54 HOH HOH . J 3 HOH C 5 505 142 HOH HOH . J 3 HOH C 6 506 136 HOH HOH . J 3 HOH C 7 507 60 HOH HOH . J 3 HOH C 8 508 129 HOH HOH . J 3 HOH C 9 509 138 HOH HOH . J 3 HOH C 10 510 61 HOH HOH . J 3 HOH C 11 511 137 HOH HOH . J 3 HOH C 12 512 162 HOH HOH . J 3 HOH C 13 513 57 HOH HOH . J 3 HOH C 14 514 165 HOH HOH . J 3 HOH C 15 515 58 HOH HOH . J 3 HOH C 16 516 163 HOH HOH . J 3 HOH C 17 517 56 HOH HOH . J 3 HOH C 18 518 184 HOH HOH . J 3 HOH C 19 519 130 HOH HOH . J 3 HOH C 20 520 143 HOH HOH . J 3 HOH C 21 521 139 HOH HOH . J 3 HOH C 22 522 141 HOH HOH . J 3 HOH C 23 523 164 HOH HOH . J 3 HOH C 24 524 53 HOH HOH . J 3 HOH C 25 525 102 HOH HOH . J 3 HOH C 26 526 190 HOH HOH . J 3 HOH C 27 527 144 HOH HOH . J 3 HOH C 28 528 132 HOH HOH . K 3 HOH D 1 401 65 HOH HOH . K 3 HOH D 2 402 63 HOH HOH . K 3 HOH D 3 403 152 HOH HOH . K 3 HOH D 4 404 62 HOH HOH . K 3 HOH D 5 405 153 HOH HOH . K 3 HOH D 6 406 151 HOH HOH . K 3 HOH D 7 407 146 HOH HOH . K 3 HOH D 8 408 148 HOH HOH . K 3 HOH D 9 409 145 HOH HOH . K 3 HOH D 10 410 157 HOH HOH . K 3 HOH D 11 411 150 HOH HOH . K 3 HOH D 12 412 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 8.479 28.146 3.338 1 33.84 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . E 2 9.914 28.19 3.429 1 37.14 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . E 2 8.044 29.088 2.227 1 34.76 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . E 2 8.931 28.928 1.114 1 31.34 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #