data_6WHU # _model_server_result.job_id YKl32h0bsqEuxIU2S-DBAQ _model_server_result.datetime_utc '2024-11-01 03:43:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6whu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":901}' # _entry.id 6WHU # _exptl.entry_id 6WHU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S)-2-amino-3-[2',4'-dichloro-4-hydroxy-5-(phosphonomethyl)biphenyl-3-yl]propanoic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WHU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 P N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG B 903 NAG 3 n E NAG 2 E 2 NAG B 904 NAG 3 n F NAG 1 F 1 NAG D 903 NAG 3 n F NAG 2 F 2 NAG D 904 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 79 1_555 A SG CYS 329 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 441 A CYS 441 1_555 A SG CYS 475 A CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 457 A CYS 457 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 765 A CYS 765 1_555 A SG CYS 819 A CYS 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 831 A CYS 831 1_555 D SG CYS 588 D CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 117 B CYS 86 1_555 B SG CYS 352 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 460 B CYS 429 1_555 B SG CYS 487 B CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 467 B CYS 436 1_555 B SG CYS 488 B CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 B SG CYS 588 B CYS 557 1_555 C SG CYS 831 C CYS 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf10 B SG CYS 777 B CYS 746 1_555 B SG CYS 832 B CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 79 C CYS 79 1_555 C SG CYS 329 C CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 441 C CYS 441 1_555 C SG CYS 475 C CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 457 C CYS 457 1_555 C SG CYS 476 C CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf14 C SG CYS 765 C CYS 765 1_555 C SG CYS 819 C CYS 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf15 D SG CYS 117 D CYS 86 1_555 D SG CYS 352 D CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 D SG CYS 460 D CYS 429 1_555 D SG CYS 487 D CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 D SG CYS 467 D CYS 436 1_555 D SG CYS 488 D CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 D SG CYS 777 D CYS 746 1_555 D SG CYS 832 D CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 224 A ASN 224 1_555 I C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 297 A ASN 297 1_555 H C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B ND2 ASN 105 B ASN 74 1_555 K C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 B ND2 ASN 573 B ASN 542 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 B ND2 ASN 719 B ASN 688 1_555 L C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C ND2 ASN 224 C ASN 224 1_555 O C1 NAG . C NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 C ND2 ASN 297 C ASN 297 1_555 N C1 NAG . C NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 D ND2 ASN 105 D ASN 74 1_555 Q C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 D ND2 ASN 573 D ASN 542 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale10 D ND2 ASN 719 D ASN 688 1_555 R C1 NAG . D NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C16 H16 Cl2 N O6 P' _chem_comp.formula_weight 420.181 _chem_comp.id QGP _chem_comp.mon_nstd_flag . _chem_comp.name "(2S)-2-amino-3-[2',4'-dichloro-4-hydroxy-5-(phosphonomethyl)biphenyl-3-yl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WHU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 QGM A 1 1001 901 QGM CDP . H 5 NAG A 1 1002 902 NAG NAG . I 5 NAG A 1 1003 903 NAG NAG . J 6 QGP B 1 901 901 QGP SDZ . K 5 NAG B 1 902 902 NAG NAG . L 5 NAG B 1 905 905 NAG NAG . M 4 QGM C 1 1001 901 QGM CDP . N 5 NAG C 1 1002 902 NAG NAG . O 5 NAG C 1 1003 903 NAG NAG . P 6 QGP D 1 901 901 QGP SDZ . Q 5 NAG D 1 902 902 NAG NAG . R 5 NAG D 1 905 905 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 QGP . . . P 6 148.294 161.094 181.609 1 0 ? C4 QGP 901 D 1 HETATM 2 C C5 QGP . . . P 6 148.839 160.93 180.36 1 0 ? C5 QGP 901 D 1 HETATM 3 C C6 QGP . . . P 6 150.173 160.622 180.216 1 0 ? C6 QGP 901 D 1 HETATM 4 C C7 QGP . . . P 6 150.953 160.475 181.343 1 0 ? C7 QGP 901 D 1 HETATM 5 C C8 QGP . . . P 6 150.412 160.627 182.601 1 0 ? C8 QGP 901 D 1 HETATM 6 C C9 QGP . . . P 6 149.078 160.938 182.728 1 0 ? C9 QGP 901 D 1 HETATM 7 C C10 QGP . . . P 6 153.24 161.113 181.498 1 0 ? C10 QGP 901 D 1 HETATM 8 C C11 QGP . . . P 6 154.954 159.525 180.98 1 0 ? C11 QGP 901 D 1 HETATM 9 C C12 QGP . . . P 6 152.286 160.159 181.221 1 0 ? C12 QGP 901 D 1 HETATM 10 C C13 QGP . . . P 6 152.656 158.888 180.824 1 0 ? C13 QGP 901 D 1 HETATM 11 O O2 QGP . . . P 6 148.211 163.553 186.452 1 0 ? O2 QGP 901 D 1 HETATM 12 C C14 QGP . . . P 6 153.996 158.569 180.703 1 0 ? C14 QGP 901 D 1 HETATM 13 C C15 QGP . . . P 6 154.58 160.796 181.377 1 0 ? C15 QGP 901 D 1 HETATM 14 C C16 QGP . . . P 6 148.518 161.095 183.973 1 0 ? C16 QGP 901 D 1 HETATM 15 C CA QGP . . . P 6 148.738 162.526 184.409 1 0 ? CA QGP 901 D 1 HETATM 16 N N QGP . . . P 6 150.095 162.697 184.922 1 0 ? N QGP 901 D 1 HETATM 17 C C QGP . . . P 6 147.772 162.844 185.526 1 0 ? C QGP 901 D 1 HETATM 18 O O QGP . . . P 6 146.626 162.36 185.44 1 0 ? O QGP 901 D 1 HETATM 19 O O3 QGP . . . P 6 146.811 159.154 180.118 1 0 ? O3 QGP 901 D 1 HETATM 20 P P QGP . . . P 6 147.146 159.837 178.856 1 0 ? P QGP 901 D 1 HETATM 21 O O4 QGP . . . P 6 147.868 158.856 178.096 1 0 ? O4 QGP 901 D 1 HETATM 22 O O5 QGP . . . P 6 145.885 160.216 178.275 1 0 ? O5 QGP 901 D 1 HETATM 23 C C1 QGP . . . P 6 148.034 161.096 179.253 1 0 ? C1 QGP 901 D 1 HETATM 24 O O6 QGP . . . P 6 147.106 161.369 181.721 1 0 ? O6 QGP 901 D 1 HETATM 25 CL CL0 QGP . . . P 6 152.765 162.678 181.982 1 0 ? CL0 QGP 901 D 1 HETATM 26 CL CL6 QGP . . . P 6 156.596 159.134 180.832 1 0 ? CL6 QGP 901 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #