data_6WIJ # _model_server_result.job_id ozyJks8VAEaaPP21Sm2EKg _model_server_result.datetime_utc '2024-11-16 06:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6WIJ # _exptl.entry_id 6WIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WIJ _cell.length_a 89.564 _cell.length_b 89.564 _cell.length_c 132.889 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O13 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O10 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'C20 H17 F3 N4 O4' _chem_comp.formula_weight 434.369 _chem_comp.id U3A _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 U3A doub 471 n n O13 C12 U3A sing 472 n n C14 C12 U3A sing 473 n n C14 N16 U3A sing 474 n n C12 C11 U3A doub 475 n n N16 C17 U3A doub 476 n n C11 N18 U3A sing 477 n n C11 C09 U3A sing 478 n n C17 N18 U3A sing 479 n n C17 C19 U3A sing 480 n n F27 C25 U3A sing 481 n n O10 C09 U3A doub 482 n n C09 N08 U3A sing 483 n n C19 C20 U3A doub 484 n y C19 C24 U3A sing 485 n y C20 C21 U3A sing 486 n y C25 C24 U3A sing 487 n n C25 F26 U3A sing 488 n n C25 F28 U3A sing 489 n n C24 C23 U3A doub 490 n y C21 C22 U3A doub 491 n y N08 C07 U3A sing 492 n n C23 C22 U3A sing 493 n y C07 C06 U3A sing 494 n n C01 O02 U3A sing 495 n n C06 C05 U3A sing 496 n n C04 C05 U3A doub 497 n y C04 C03 U3A sing 498 n y O02 C03 U3A sing 499 n n C05 C29 U3A sing 500 n y C03 N31 U3A doub 501 n y C29 C30 U3A doub 502 n y N31 C30 U3A sing 503 n y C29 H1 U3A sing 504 n n C01 H2 U3A sing 505 n n C01 H3 U3A sing 506 n n C01 H4 U3A sing 507 n n C04 H5 U3A sing 508 n n C06 H6 U3A sing 509 n n C06 H7 U3A sing 510 n n C07 H8 U3A sing 511 n n C07 H9 U3A sing 512 n n C20 H10 U3A sing 513 n n C21 H11 U3A sing 514 n n C22 H12 U3A sing 515 n n C23 H13 U3A sing 516 n n C30 H14 U3A sing 517 n n N08 H15 U3A sing 518 n n N18 H16 U3A sing 519 n n O13 H17 U3A sing 520 n n # _atom_sites.entry_id 6WIJ _atom_sites.fract_transf_matrix[1][1] 0.011165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 U3A A 1 203 301 U3A 448 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 8 HOH HOH . H 6 HOH A 2 302 38 HOH HOH . H 6 HOH A 3 303 44 HOH HOH . H 6 HOH A 4 304 53 HOH HOH . H 6 HOH A 5 305 37 HOH HOH . H 6 HOH A 6 306 41 HOH HOH . H 6 HOH A 7 307 45 HOH HOH . H 6 HOH A 8 308 28 HOH HOH . H 6 HOH A 9 309 23 HOH HOH . H 6 HOH A 10 310 27 HOH HOH . H 6 HOH A 11 311 10 HOH HOH . H 6 HOH A 12 312 29 HOH HOH . H 6 HOH A 13 313 50 HOH HOH . H 6 HOH A 14 314 26 HOH HOH . H 6 HOH A 15 315 46 HOH HOH . H 6 HOH A 16 316 51 HOH HOH . H 6 HOH A 17 317 52 HOH HOH . H 6 HOH A 18 318 32 HOH HOH . H 6 HOH A 19 319 54 HOH HOH . H 6 HOH A 20 320 49 HOH HOH . H 6 HOH A 21 321 35 HOH HOH . H 6 HOH A 22 322 43 HOH HOH . H 6 HOH A 23 323 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 U3A . . . D 3 -14.599 -40.619 -16.303 1 98.11 ? C11 U3A 203 A 1 HETATM 2 C C12 U3A . . . D 3 -15.464 -40.383 -17.485 1 89.75 ? C12 U3A 203 A 1 HETATM 3 C C25 U3A . . . D 3 -15.348 -35.832 -14.905 1 143.55 ? C25 U3A 203 A 1 HETATM 4 C C29 U3A . . . D 3 -12.628 -41.124 -11.225 1 118.58 ? C29 U3A 203 A 1 HETATM 5 F F27 U3A . . . D 3 -15.796 -35.543 -16.172 1 144.29 ? F27 U3A 203 A 1 HETATM 6 F F28 U3A . . . D 3 -15.732 -34.823 -14.06 1 147.39 ? F28 U3A 203 A 1 HETATM 7 C C01 U3A . . . D 3 -8.635 -39.083 -13.277 1 116.45 ? C01 U3A 203 A 1 HETATM 8 C C03 U3A . . . D 3 -10.639 -39.413 -12.048 1 122.68 ? C03 U3A 203 A 1 HETATM 9 C C04 U3A . . . D 3 -10.784 -40.646 -12.675 1 122.57 ? C04 U3A 203 A 1 HETATM 10 C C05 U3A . . . D 3 -11.794 -41.537 -12.274 1 122.09 ? C05 U3A 203 A 1 HETATM 11 C C06 U3A . . . D 3 -11.98 -42.928 -12.965 1 122.49 ? C06 U3A 203 A 1 HETATM 12 C C07 U3A . . . D 3 -13.417 -43.118 -13.537 1 119.99 ? C07 U3A 203 A 1 HETATM 13 C C09 U3A . . . D 3 -14.39 -41.993 -15.637 1 101.97 ? C09 U3A 203 A 1 HETATM 14 C C14 U3A . . . D 3 -15.579 -38.982 -18.041 1 86.28 ? C14 U3A 203 A 1 HETATM 15 C C17 U3A . . . D 3 -13.992 -38.118 -16.245 1 109.68 ? C17 U3A 203 A 1 HETATM 16 C C19 U3A . . . D 3 -13.188 -36.965 -15.529 1 129.07 ? C19 U3A 203 A 1 HETATM 17 C C20 U3A . . . D 3 -11.831 -37.016 -15.506 1 135.64 ? C20 U3A 203 A 1 HETATM 18 C C21 U3A . . . D 3 -11.107 -36.009 -14.868 1 140.12 ? C21 U3A 203 A 1 HETATM 19 C C22 U3A . . . D 3 -11.778 -34.959 -14.251 1 141.6 ? C22 U3A 203 A 1 HETATM 20 C C23 U3A . . . D 3 -13.131 -34.912 -14.268 1 140.75 ? C23 U3A 203 A 1 HETATM 21 C C24 U3A . . . D 3 -13.861 -35.913 -14.9 1 139.82 ? C24 U3A 203 A 1 HETATM 22 C C30 U3A . . . D 3 -12.439 -39.886 -10.633 1 119.66 ? C30 U3A 203 A 1 HETATM 23 F F26 U3A . . . D 3 -15.902 -36.98 -14.47 1 140.33 ? F26 U3A 203 A 1 HETATM 24 N N08 U3A . . . D 3 -13.731 -41.95 -14.341 1 115.45 ? N08 U3A 203 A 1 HETATM 25 N N16 U3A . . . D 3 -14.843 -37.867 -17.416 1 95.17 ? N16 U3A 203 A 1 HETATM 26 N N18 U3A . . . D 3 -13.873 -39.496 -15.69 1 103.5 ? N18 U3A 203 A 1 HETATM 27 N N31 U3A . . . D 3 -11.46 -39.062 -11.047 1 122.61 ? N31 U3A 203 A 1 HETATM 28 O O02 U3A . . . D 3 -9.622 -38.525 -12.457 1 119.85 ? O02 U3A 203 A 1 HETATM 29 O O10 U3A . . . D 3 -14.741 -43.035 -16.152 1 94.42 ? O10 U3A 203 A 1 HETATM 30 O O13 U3A . . . D 3 -16.185 -41.487 -18.101 1 91.88 ? O13 U3A 203 A 1 HETATM 31 O O15 U3A . . . D 3 -16.258 -38.761 -18.981 1 70.1 ? O15 U3A 203 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #