data_6WIT # _model_server_result.job_id H12fOK8Oqgk2Ds-99lyiiw _model_server_result.datetime_utc '2024-12-11 21:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6WIT # _exptl.entry_id 6WIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WIT _cell.length_a 74.409 _cell.length_b 89.809 _cell.length_c 172.782 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,O,P,Q 1 1 D,E,F,I,J,K,L,M,N,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 156 A CYS 140 1_555 A SG CYS 212 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 21 B CYS 23 1_555 B SG CYS 90 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 138 B CYS 134 1_555 B SG CYS 197 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 9 C CYS 126 1_555 C SG CYS 83 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 C SG CYS 14 C CYS 131 1_555 C SG CYS 40 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 D SG CYS 156 H CYS 140 1_555 D SG CYS 212 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 E SG CYS 21 L CYS 22 1_555 E SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 E SG CYS 138 L CYS 134 1_555 E SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 F SG CYS 9 I CYS 126 1_555 F SG CYS 83 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 F SG CYS 14 I CYS 131 1_555 F SG CYS 40 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 C ND2 ASN 39 C ASN 156 1_555 G C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 F ND2 ASN 39 I ASN 156 1_555 L C1 NAG . I NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 F ND2 ASN 43 I ASN 160 1_555 M C1 NAG . I NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 F ND2 ASN 74 I ASN 187 1_555 N C1 NAG . I NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WIT _atom_sites.fract_transf_matrix[1][1] 0.013439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG C 1 301 1156 NAG NAG . H 5 SO4 C 1 302 3 SO4 SO4 . I 5 SO4 H 1 301 1 SO4 SO4 . J 5 SO4 H 1 302 4 SO4 SO4 . K 5 SO4 L 1 301 2 SO4 SO4 . L 4 NAG I 1 301 1156 NAG NAG . M 4 NAG I 1 302 1160 NAG NAG . N 4 NAG I 1 303 1187 NAG NAG . O 6 HOH A 1 301 57 HOH HOH . O 6 HOH A 2 302 59 HOH HOH . O 6 HOH A 3 303 25 HOH HOH . O 6 HOH A 4 304 58 HOH HOH . O 6 HOH A 5 305 32 HOH HOH . O 6 HOH A 6 306 34 HOH HOH . O 6 HOH A 7 307 15 HOH HOH . O 6 HOH A 8 308 1 HOH HOH . O 6 HOH A 9 309 2 HOH HOH . O 6 HOH A 10 310 26 HOH HOH . O 6 HOH A 11 311 29 HOH HOH . O 6 HOH A 12 312 16 HOH HOH . O 6 HOH A 13 313 4 HOH HOH . O 6 HOH A 14 314 56 HOH HOH . O 6 HOH A 15 315 21 HOH HOH . O 6 HOH A 16 316 23 HOH HOH . O 6 HOH A 17 317 14 HOH HOH . O 6 HOH A 18 318 30 HOH HOH . O 6 HOH A 19 319 22 HOH HOH . O 6 HOH A 20 320 28 HOH HOH . O 6 HOH A 21 321 33 HOH HOH . O 6 HOH A 22 322 27 HOH HOH . O 6 HOH A 23 323 31 HOH HOH . O 6 HOH A 24 324 3 HOH HOH . O 6 HOH A 25 325 67 HOH HOH . O 6 HOH A 26 326 24 HOH HOH . P 6 HOH B 1 301 62 HOH HOH . Q 6 HOH C 1 401 37 HOH HOH . R 6 HOH H 1 401 71 HOH HOH . R 6 HOH H 2 402 69 HOH HOH . R 6 HOH H 3 403 70 HOH HOH . R 6 HOH H 4 404 50 HOH HOH . R 6 HOH H 5 405 7 HOH HOH . R 6 HOH H 6 406 19 HOH HOH . R 6 HOH H 7 407 48 HOH HOH . R 6 HOH H 8 408 63 HOH HOH . R 6 HOH H 9 409 66 HOH HOH . R 6 HOH H 10 410 46 HOH HOH . R 6 HOH H 11 411 45 HOH HOH . R 6 HOH H 12 412 17 HOH HOH . R 6 HOH H 13 413 10 HOH HOH . R 6 HOH H 14 414 9 HOH HOH . R 6 HOH H 15 415 39 HOH HOH . R 6 HOH H 16 416 43 HOH HOH . R 6 HOH H 17 417 49 HOH HOH . R 6 HOH H 18 418 8 HOH HOH . R 6 HOH H 19 419 6 HOH HOH . R 6 HOH H 20 420 38 HOH HOH . R 6 HOH H 21 421 35 HOH HOH . R 6 HOH H 22 422 47 HOH HOH . R 6 HOH H 23 423 40 HOH HOH . R 6 HOH H 24 424 44 HOH HOH . S 6 HOH L 1 401 61 HOH HOH . S 6 HOH L 2 402 72 HOH HOH . S 6 HOH L 3 403 65 HOH HOH . S 6 HOH L 4 404 42 HOH HOH . S 6 HOH L 5 405 53 HOH HOH . S 6 HOH L 6 406 68 HOH HOH . S 6 HOH L 7 407 20 HOH HOH . S 6 HOH L 8 408 52 HOH HOH . S 6 HOH L 9 409 13 HOH HOH . S 6 HOH L 10 410 5 HOH HOH . S 6 HOH L 11 411 51 HOH HOH . S 6 HOH L 12 412 11 HOH HOH . S 6 HOH L 13 413 12 HOH HOH . S 6 HOH L 14 414 64 HOH HOH . T 6 HOH I 1 401 36 HOH HOH . T 6 HOH I 2 402 41 HOH HOH . T 6 HOH I 3 403 60 HOH HOH . T 6 HOH I 4 404 54 HOH HOH . T 6 HOH I 5 405 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 -0.98 8.959 -87.956 1 74.47 ? C1 NAG 301 C 1 HETATM 2 C C2 NAG . . . G 4 -2.398 8.973 -88.527 1 71.7 ? C2 NAG 301 C 1 HETATM 3 C C3 NAG . . . G 4 -2.418 9.763 -89.834 1 83.48 ? C3 NAG 301 C 1 HETATM 4 C C4 NAG . . . G 4 -1.837 11.157 -89.607 1 79.75 ? C4 NAG 301 C 1 HETATM 5 C C5 NAG . . . G 4 -0.473 11.085 -88.91 1 77.93 ? C5 NAG 301 C 1 HETATM 6 C C6 NAG . . . G 4 0.071 12.44 -88.508 1 94.78 ? C6 NAG 301 C 1 HETATM 7 C C7 NAG . . . G 4 -2.351 6.722 -89.533 1 69.28 ? C7 NAG 301 C 1 HETATM 8 C C8 NAG . . . G 4 -3.022 5.383 -89.616 1 61.79 ? C8 NAG 301 C 1 HETATM 9 N N2 NAG . . . G 4 -2.918 7.623 -88.717 1 60.04 ? N2 NAG 301 C 1 HETATM 10 O O3 NAG . . . G 4 -3.748 9.85 -90.335 1 62.72 ? O3 NAG 301 C 1 HETATM 11 O O4 NAG . . . G 4 -1.672 11.819 -90.857 1 69.18 ? O4 NAG 301 C 1 HETATM 12 O O5 NAG . . . G 4 -0.553 10.291 -87.715 1 73.47 ? O5 NAG 301 C 1 HETATM 13 O O6 NAG . . . G 4 -0.148 13.388 -89.545 1 88.1 ? O6 NAG 301 C 1 HETATM 14 O O7 NAG . . . G 4 -1.335 6.975 -90.171 1 70.98 ? O7 NAG 301 C 1 HETATM 15 H H2 NAG . . . G 4 -2.982 9.424 -87.888 1 86.46 ? H2 NAG 301 C 1 HETATM 16 H H3 NAG . . . G 4 -1.877 9.295 -90.498 1 100.6 ? H3 NAG 301 C 1 HETATM 17 H H4 NAG . . . G 4 -2.453 11.658 -89.04 1 96.12 ? H4 NAG 301 C 1 HETATM 18 H H5 NAG . . . G 4 0.159 10.657 -89.519 1 93.93 ? H5 NAG 301 C 1 HETATM 19 H H61 NAG . . . G 4 1.028 12.367 -88.335 1 114.15 ? H61 NAG 301 C 1 HETATM 20 H H62 NAG . . . G 4 -0.379 12.741 -87.696 1 114.15 ? H62 NAG 301 C 1 HETATM 21 H H81 NAG . . . G 4 -2.506 4.797 -90.203 1 74.56 ? H81 NAG 301 C 1 HETATM 22 H H82 NAG . . . G 4 -3.923 5.492 -89.976 1 74.56 ? H82 NAG 301 C 1 HETATM 23 H H83 NAG . . . G 4 -3.072 4.988 -88.725 1 74.56 ? H83 NAG 301 C 1 HETATM 24 H HN2 NAG . . . G 4 -3.667 7.379 -88.258 1 72.46 ? HN2 NAG 301 C 1 HETATM 25 H HO3 NAG . . . G 4 -3.725 10.223 -91.14 1 75.68 ? HO3 NAG 301 C 1 HETATM 26 H HO4 NAG . . . G 4 -1.612 12.695 -90.727 1 83.43 ? HO4 NAG 301 C 1 HETATM 27 H HO6 NAG . . . G 4 0.167 14.177 -89.294 1 106.13 ? HO6 NAG 301 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #