data_6WIT
#
_model_server_result.job_id            zYcos_LFpyaYBW8_cXnZHQ 
_model_server_result.datetime_utc      '2024-12-11 21:41:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    6WIT 
#
_exptl.entry_id    6WIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WIT 
_cell.length_a            74.409 
_cell.length_b            89.809 
_cell.length_c            172.782 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,O,P,Q 1 1 
D,E,F,I,J,K,L,M,N,R,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 156 A CYS 140 1_555 A SG CYS 212 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 21 B CYS 23 1_555 B SG CYS 90 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 138 B CYS 134 1_555 B SG CYS 197 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 C SG CYS 9 C CYS 126 1_555 C SG CYS 83 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 C SG CYS 14 C CYS 131 1_555 C SG CYS 40 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 D SG CYS 156 H CYS 140 1_555 D SG CYS 212 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 E SG CYS 21 L CYS 22 1_555 E SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf10 E SG CYS 138 L CYS 134 1_555 E SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 F SG CYS 9 I CYS 126 1_555 F SG CYS 83 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 F SG CYS 14 I CYS 131 1_555 F SG CYS 40 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 C ND2 ASN 39 C ASN 156 1_555 G C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 F ND2 ASN 39 I ASN 156 1_555 L C1 NAG . I NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale3 F ND2 ASN 43 I ASN 160 1_555 M C1 NAG . I NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale4 F ND2 ASN 74 I ASN 187 1_555 N C1 NAG . I NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6WIT 
_atom_sites.fract_transf_matrix[1][1]    0.013439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005788 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG C 1 301 1156 NAG NAG . 
H 5 SO4 C 1 302 3 SO4 SO4 . 
I 5 SO4 H 1 301 1 SO4 SO4 . 
J 5 SO4 H 1 302 4 SO4 SO4 . 
K 5 SO4 L 1 301 2 SO4 SO4 . 
L 4 NAG I 1 301 1156 NAG NAG . 
M 4 NAG I 1 302 1160 NAG NAG . 
N 4 NAG I 1 303 1187 NAG NAG . 
O 6 HOH A 1 301 57 HOH HOH . 
O 6 HOH A 2 302 59 HOH HOH . 
O 6 HOH A 3 303 25 HOH HOH . 
O 6 HOH A 4 304 58 HOH HOH . 
O 6 HOH A 5 305 32 HOH HOH . 
O 6 HOH A 6 306 34 HOH HOH . 
O 6 HOH A 7 307 15 HOH HOH . 
O 6 HOH A 8 308 1 HOH HOH . 
O 6 HOH A 9 309 2 HOH HOH . 
O 6 HOH A 10 310 26 HOH HOH . 
O 6 HOH A 11 311 29 HOH HOH . 
O 6 HOH A 12 312 16 HOH HOH . 
O 6 HOH A 13 313 4 HOH HOH . 
O 6 HOH A 14 314 56 HOH HOH . 
O 6 HOH A 15 315 21 HOH HOH . 
O 6 HOH A 16 316 23 HOH HOH . 
O 6 HOH A 17 317 14 HOH HOH . 
O 6 HOH A 18 318 30 HOH HOH . 
O 6 HOH A 19 319 22 HOH HOH . 
O 6 HOH A 20 320 28 HOH HOH . 
O 6 HOH A 21 321 33 HOH HOH . 
O 6 HOH A 22 322 27 HOH HOH . 
O 6 HOH A 23 323 31 HOH HOH . 
O 6 HOH A 24 324 3 HOH HOH . 
O 6 HOH A 25 325 67 HOH HOH . 
O 6 HOH A 26 326 24 HOH HOH . 
P 6 HOH B 1 301 62 HOH HOH . 
Q 6 HOH C 1 401 37 HOH HOH . 
R 6 HOH H 1 401 71 HOH HOH . 
R 6 HOH H 2 402 69 HOH HOH . 
R 6 HOH H 3 403 70 HOH HOH . 
R 6 HOH H 4 404 50 HOH HOH . 
R 6 HOH H 5 405 7 HOH HOH . 
R 6 HOH H 6 406 19 HOH HOH . 
R 6 HOH H 7 407 48 HOH HOH . 
R 6 HOH H 8 408 63 HOH HOH . 
R 6 HOH H 9 409 66 HOH HOH . 
R 6 HOH H 10 410 46 HOH HOH . 
R 6 HOH H 11 411 45 HOH HOH . 
R 6 HOH H 12 412 17 HOH HOH . 
R 6 HOH H 13 413 10 HOH HOH . 
R 6 HOH H 14 414 9 HOH HOH . 
R 6 HOH H 15 415 39 HOH HOH . 
R 6 HOH H 16 416 43 HOH HOH . 
R 6 HOH H 17 417 49 HOH HOH . 
R 6 HOH H 18 418 8 HOH HOH . 
R 6 HOH H 19 419 6 HOH HOH . 
R 6 HOH H 20 420 38 HOH HOH . 
R 6 HOH H 21 421 35 HOH HOH . 
R 6 HOH H 22 422 47 HOH HOH . 
R 6 HOH H 23 423 40 HOH HOH . 
R 6 HOH H 24 424 44 HOH HOH . 
S 6 HOH L 1 401 61 HOH HOH . 
S 6 HOH L 2 402 72 HOH HOH . 
S 6 HOH L 3 403 65 HOH HOH . 
S 6 HOH L 4 404 42 HOH HOH . 
S 6 HOH L 5 405 53 HOH HOH . 
S 6 HOH L 6 406 68 HOH HOH . 
S 6 HOH L 7 407 20 HOH HOH . 
S 6 HOH L 8 408 52 HOH HOH . 
S 6 HOH L 9 409 13 HOH HOH . 
S 6 HOH L 10 410 5 HOH HOH . 
S 6 HOH L 11 411 51 HOH HOH . 
S 6 HOH L 12 412 11 HOH HOH . 
S 6 HOH L 13 413 12 HOH HOH . 
S 6 HOH L 14 414 64 HOH HOH . 
T 6 HOH I 1 401 36 HOH HOH . 
T 6 HOH I 2 402 41 HOH HOH . 
T 6 HOH I 3 403 60 HOH HOH . 
T 6 HOH I 4 404 54 HOH HOH . 
T 6 HOH I 5 405 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 4 35.513 -12.895 -10.849 1 66.94 ? C1 NAG 301 I 1 
HETATM 2 C C2 NAG . . . L 4 36.034 -13.981 -9.918 1 70.68 ? C2 NAG 301 I 1 
HETATM 3 C C3 NAG . . . L 4 36.926 -13.376 -8.833 1 78.88 ? C3 NAG 301 I 1 
HETATM 4 C C4 NAG . . . L 4 38.043 -12.561 -9.472 1 96.55 ? C4 NAG 301 I 1 
HETATM 5 C C5 NAG . . . L 4 37.458 -11.537 -10.446 1 80.12 ? C5 NAG 301 I 1 
HETATM 6 C C6 NAG . . . L 4 38.515 -10.778 -11.219 1 84.46 ? C6 NAG 301 I 1 
HETATM 7 C C7 NAG . . . L 4 34.611 -15.975 -9.722 1 71.8 ? C7 NAG 301 I 1 
HETATM 8 C C8 NAG . . . L 4 33.466 -16.606 -8.988 1 65.81 ? C8 NAG 301 I 1 
HETATM 9 N N2 NAG . . . L 4 34.945 -14.742 -9.329 1 74.37 ? N2 NAG 301 I 1 
HETATM 10 O O3 NAG . . . L 4 37.478 -14.427 -8.046 1 64.38 ? O3 NAG 301 I 1 
HETATM 11 O O4 NAG . . . L 4 38.779 -11.879 -8.463 1 109.1 ? O4 NAG 301 I 1 
HETATM 12 O O5 NAG . . . L 4 36.608 -12.183 -11.411 1 78.31 ? O5 NAG 301 I 1 
HETATM 13 O O6 NAG . . . L 4 39.814 -11.257 -10.901 1 79.55 ? O6 NAG 301 I 1 
HETATM 14 O O7 NAG . . . L 4 35.199 -16.552 -10.632 1 69.04 ? O7 NAG 301 I 1 
HETATM 15 H H2 NAG . . . L 4 36.582 -14.591 -10.447 1 85.23 ? H2 NAG 301 I 1 
HETATM 16 H H3 NAG . . . L 4 36.394 -12.793 -8.259 1 95.07 ? H3 NAG 301 I 1 
HETATM 17 H H4 NAG . . . L 4 38.641 -13.16 -9.959 1 116.28 ? H4 NAG 301 I 1 
HETATM 18 H H5 NAG . . . L 4 36.917 -10.902 -9.94 1 96.56 ? H5 NAG 301 I 1 
HETATM 19 H H61 NAG . . . L 4 38.458 -9.83 -10.995 1 101.77 ? H61 NAG 301 I 1 
HETATM 20 H H62 NAG . . . L 4 38.356 -10.89 -12.176 1 101.77 ? H62 NAG 301 I 1 
HETATM 21 H H81 NAG . . . L 4 33.052 -17.286 -9.554 1 79.38 ? H81 NAG 301 I 1 
HETATM 22 H H82 NAG . . . L 4 32.805 -15.922 -8.766 1 79.38 ? H82 NAG 301 I 1 
HETATM 23 H H83 NAG . . . L 4 33.793 -17.021 -8.168 1 79.38 ? H83 NAG 301 I 1 
HETATM 24 H HN2 NAG . . . L 4 34.464 -14.357 -8.656 1 89.66 ? HN2 NAG 301 I 1 
HETATM 25 H HO3 NAG . . . L 4 37.948 -14.07 -7.382 1 77.67 ? HO3 NAG 301 I 1 
HETATM 26 H HO4 NAG . . . L 4 39.56 -11.623 -8.796 1 131.34 ? HO4 NAG 301 I 1 
HETATM 27 H HO6 NAG . . . L 4 40.419 -10.789 -11.35 1 95.88 ? HO6 NAG 301 I 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#