data_6WIV
#
_model_server_result.job_id            MtaWg5WNKoC-oyGgLvU0ZA 
_model_server_result.datetime_utc      '2025-03-06 06:50:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wiv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    6WIV 
#
_exptl.entry_id    6WIV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 103 A CYS 103 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 259 A CYS 259 1_555 A SG CYS 293 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 546 A CYS 546 1_555 A SG CYS 644 A CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 108 B CYS 108 1_555 B SG CYS 135 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 237 B CYS 237 1_555 B SG CYS 266 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 265 B CYS 265 1_555 B SG CYS 302 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 553 B CYS 553 1_555 B SG CYS 648 B CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 365 A ASN 365 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 385 A ASN 385 1_555 D C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 A ND2 ASN 397 A ASN 397 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale4 B ND2 ASN 404 B ASN 404 1_555 L C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A O GLY 277 A GLY 277 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 312 n n 
C1 O1 NAG sing 313 n n 
C1 O5 NAG sing 314 n n 
C1 H1 NAG sing 315 n n 
C2 C3 NAG sing 316 n n 
C2 N2 NAG sing 317 n n 
C2 H2 NAG sing 318 n n 
C3 C4 NAG sing 319 n n 
C3 O3 NAG sing 320 n n 
C3 H3 NAG sing 321 n n 
C4 C5 NAG sing 322 n n 
C4 O4 NAG sing 323 n n 
C4 H4 NAG sing 324 n n 
C5 C6 NAG sing 325 n n 
C5 O5 NAG sing 326 n n 
C5 H5 NAG sing 327 n n 
C6 O6 NAG sing 328 n n 
C6 H61 NAG sing 329 n n 
C6 H62 NAG sing 330 n n 
C7 C8 NAG sing 331 n n 
C7 N2 NAG sing 332 n n 
C7 O7 NAG doub 333 n n 
C8 H81 NAG sing 334 n n 
C8 H82 NAG sing 335 n n 
C8 H83 NAG sing 336 n n 
N2 HN2 NAG sing 337 n n 
O1 HO1 NAG sing 338 n n 
O3 HO3 NAG sing 339 n n 
O4 HO4 NAG sing 340 n n 
O6 HO6 NAG sing 341 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6WIV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 901 801 NAG NAG . 
D 3 NAG A 1 902 901 NAG NAG . 
E 3 NAG A 1 903 1001 NAG NAG . 
F 4 CA A 1 904 1 CA CA . 
G 5 U3G A 1 905 1 U3G PE5 . 
H 6 CLR A 1 906 1 CLR CLR . 
I 6 CLR A 1 907 3 CLR CLR . 
J 6 CLR A 1 908 4 CLR CLR . 
K 6 CLR A 1 909 5 CLR CLR . 
L 3 NAG B 1 901 801 NAG NAG . 
M 7 U3D B 1 902 1 U3D PC2 . 
N 6 CLR B 1 903 2 CLR CLR . 
O 6 CLR B 1 904 6 CLR CLR . 
P 6 CLR B 1 905 7 CLR CLR . 
Q 6 CLR B 1 906 8 CLR CLR . 
R 6 CLR B 1 907 9 CLR CLR . 
S 6 CLR B 1 908 10 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 3 156.732 113.378 78.392 1 100.67 ? C1 NAG 901 B 1 
HETATM 2 C C2 NAG . . . L 3 155.296 113.887 78.356 1 100.67 ? C2 NAG 901 B 1 
HETATM 3 C C3 NAG . . . L 3 154.617 113.621 79.693 1 100.67 ? C3 NAG 901 B 1 
HETATM 4 C C4 NAG . . . L 3 154.728 112.147 80.058 1 100.67 ? C4 NAG 901 B 1 
HETATM 5 C C5 NAG . . . L 3 156.185 111.691 79.997 1 100.67 ? C5 NAG 901 B 1 
HETATM 6 C C6 NAG . . . L 3 156.349 110.205 80.215 1 100.67 ? C6 NAG 901 B 1 
HETATM 7 C C7 NAG . . . L 3 154.714 115.772 76.9 1 100.67 ? C7 NAG 901 B 1 
HETATM 8 C C8 NAG . . . L 3 154.152 114.745 75.966 1 100.67 ? C8 NAG 901 B 1 
HETATM 9 N N2 NAG . . . L 3 155.249 115.303 78.031 1 100.67 ? N2 NAG 901 B 1 
HETATM 10 O O3 NAG . . . L 3 153.249 114.005 79.615 1 100.67 ? O3 NAG 901 B 1 
HETATM 11 O O4 NAG . . . L 3 154.224 111.931 81.371 1 100.67 ? O4 NAG 901 B 1 
HETATM 12 O O5 NAG . . . L 3 156.738 111.983 78.706 1 100.67 ? O5 NAG 901 B 1 
HETATM 13 O O6 NAG . . . L 3 157.046 109.597 79.135 1 100.67 ? O6 NAG 901 B 1 
HETATM 14 O O7 NAG . . . L 3 154.685 116.971 76.643 1 100.67 ? O7 NAG 901 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#