data_6WIV # _model_server_result.job_id xV4Rkh2SsWoht789SyvsVg _model_server_result.datetime_utc '2025-06-30 12:33:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":902}' # _entry.id 6WIV # _exptl.entry_id 6WIV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 814.167 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-3-[(Z)-icos-11-enoyl]oxy-2-[(Z)-octadec-9-enoyl]oxypropyl] 2-(trimethylazaniumyl)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 103 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 259 A CYS 259 1_555 A SG CYS 293 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 546 A CYS 546 1_555 A SG CYS 644 A CYS 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 108 B CYS 108 1_555 B SG CYS 135 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 237 B CYS 237 1_555 B SG CYS 266 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 265 B CYS 265 1_555 B SG CYS 302 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 553 B CYS 553 1_555 B SG CYS 648 B CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 365 A ASN 365 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 385 A ASN 385 1_555 D C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 397 A ASN 397 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B ND2 ASN 404 B ASN 404 1_555 L C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A O GLY 277 A GLY 277 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? # _chem_comp.formula 'C46 H88 N O8 P' _chem_comp.formula_weight 814.167 _chem_comp.id U3D _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-3-[(Z)-icos-11-enoyl]oxy-2-[(Z)-octadec-9-enoyl]oxypropyl] 2-(trimethylazaniumyl)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (~{Z})-icos-11-enoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 N33 U3D sing 463 n n O29 P27 U3D doub 464 n n N33 C35 U3D sing 465 n n N33 C34 U3D sing 466 n n N33 C32 U3D sing 467 n n C32 C31 U3D sing 468 n n P27 O28 U3D sing 469 n n P27 O30 U3D sing 470 n n P27 O26 U3D sing 471 n n C31 O30 U3D sing 472 n n O26 C25 U3D sing 473 n n C25 C24 U3D sing 474 n n C24 C23 U3D sing 475 n n C24 O37 U3D sing 476 n n C23 O22 U3D sing 477 n n O37 C38 U3D sing 478 n n O22 C20 U3D sing 479 n n O21 C20 U3D doub 480 n n C20 C19 U3D sing 481 n n C38 O39 U3D doub 482 n n C38 C40 U3D sing 483 n n C40 C41 U3D sing 484 n n C19 C18 U3D sing 485 n n C18 C17 U3D sing 486 n n C41 C42 U3D sing 487 n n C42 C43 U3D sing 488 n n C17 C16 U3D sing 489 n n C16 C15 U3D sing 490 n n C43 C44 U3D sing 491 n n C02 C01 U3D sing 492 n n C02 C03 U3D sing 493 n n C15 C14 U3D sing 494 n n C44 C45 U3D sing 495 n n C03 C04 U3D sing 496 n n C04 C05 U3D sing 497 n n C14 C13 U3D sing 498 n n C45 C46 U3D sing 499 n n C13 C12 U3D sing 500 n n C05 C06 U3D sing 501 n n C46 C47 U3D sing 502 n n C06 C07 U3D sing 503 n n C12 C11 U3D sing 504 n n C11 C10 U3D sing 505 n n C08 C07 U3D sing 506 n n C08 C09 U3D sing 507 n n C47 C48 U3D doub 508 z n C10 C09 U3D doub 509 z n C48 C49 U3D sing 510 n n C49 C50 U3D sing 511 n n C50 C51 U3D sing 512 n n C51 C52 U3D sing 513 n n C52 C53 U3D sing 514 n n C53 C54 U3D sing 515 n n C54 C55 U3D sing 516 n n C55 C56 U3D sing 517 n n C11 H1 U3D sing 518 n n C11 H2 U3D sing 519 n n C12 H3 U3D sing 520 n n C12 H4 U3D sing 521 n n C13 H5 U3D sing 522 n n C13 H6 U3D sing 523 n n C14 H7 U3D sing 524 n n C14 H8 U3D sing 525 n n C15 H9 U3D sing 526 n n C15 H10 U3D sing 527 n n C16 H11 U3D sing 528 n n C16 H12 U3D sing 529 n n C17 H13 U3D sing 530 n n C17 H14 U3D sing 531 n n C18 H15 U3D sing 532 n n C18 H16 U3D sing 533 n n C19 H17 U3D sing 534 n n C19 H18 U3D sing 535 n n C23 H19 U3D sing 536 n n C23 H20 U3D sing 537 n n C24 H21 U3D sing 538 n n C25 H22 U3D sing 539 n n C25 H23 U3D sing 540 n n C31 H24 U3D sing 541 n n C31 H25 U3D sing 542 n n C32 H26 U3D sing 543 n n C32 H27 U3D sing 544 n n C34 H28 U3D sing 545 n n C34 H29 U3D sing 546 n n C34 H30 U3D sing 547 n n C35 H31 U3D sing 548 n n C35 H32 U3D sing 549 n n C35 H33 U3D sing 550 n n C36 H34 U3D sing 551 n n C36 H35 U3D sing 552 n n C36 H36 U3D sing 553 n n C40 H37 U3D sing 554 n n C40 H38 U3D sing 555 n n C41 H39 U3D sing 556 n n C41 H40 U3D sing 557 n n C42 H41 U3D sing 558 n n C42 H42 U3D sing 559 n n C43 H43 U3D sing 560 n n C43 H44 U3D sing 561 n n C44 H45 U3D sing 562 n n C44 H46 U3D sing 563 n n C45 H47 U3D sing 564 n n C45 H48 U3D sing 565 n n C46 H49 U3D sing 566 n n C46 H50 U3D sing 567 n n C47 H51 U3D sing 568 n n C48 H52 U3D sing 569 n n C01 H53 U3D sing 570 n n C01 H54 U3D sing 571 n n C01 H55 U3D sing 572 n n C02 H56 U3D sing 573 n n C02 H57 U3D sing 574 n n C03 H58 U3D sing 575 n n C03 H59 U3D sing 576 n n C04 H60 U3D sing 577 n n C04 H61 U3D sing 578 n n C05 H62 U3D sing 579 n n C05 H63 U3D sing 580 n n C06 H64 U3D sing 581 n n C06 H65 U3D sing 582 n n C07 H66 U3D sing 583 n n C07 H67 U3D sing 584 n n C08 H68 U3D sing 585 n n C08 H69 U3D sing 586 n n C09 H70 U3D sing 587 n n C10 H71 U3D sing 588 n n C49 H72 U3D sing 589 n n C50 H74 U3D sing 590 n n C50 H75 U3D sing 591 n n C51 H76 U3D sing 592 n n C51 H77 U3D sing 593 n n C52 H78 U3D sing 594 n n C52 H79 U3D sing 595 n n C53 H80 U3D sing 596 n n C53 H81 U3D sing 597 n n C54 H82 U3D sing 598 n n C54 H83 U3D sing 599 n n C55 H84 U3D sing 600 n n C55 H85 U3D sing 601 n n C56 H86 U3D sing 602 n n C56 H87 U3D sing 603 n n C56 H88 U3D sing 604 n n C49 H73 U3D sing 605 n n # _atom_sites.entry_id 6WIV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 901 801 NAG NAG . D 3 NAG A 1 902 901 NAG NAG . E 3 NAG A 1 903 1001 NAG NAG . F 4 CA A 1 904 1 CA CA . G 5 U3G A 1 905 1 U3G PE5 . H 6 CLR A 1 906 1 CLR CLR . I 6 CLR A 1 907 3 CLR CLR . J 6 CLR A 1 908 4 CLR CLR . K 6 CLR A 1 909 5 CLR CLR . L 3 NAG B 1 901 801 NAG NAG . M 7 U3D B 1 902 1 U3D PC2 . N 6 CLR B 1 903 2 CLR CLR . O 6 CLR B 1 904 6 CLR CLR . P 6 CLR B 1 905 7 CLR CLR . Q 6 CLR B 1 906 8 CLR CLR . R 6 CLR B 1 907 9 CLR CLR . S 6 CLR B 1 908 10 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 U3D . . . M 7 156.198 119.861 166.63 1 64.14 ? C11 U3D 902 B 1 HETATM 2 C C12 U3D . . . M 7 155.363 118.59 166.623 1 64.14 ? C12 U3D 902 B 1 HETATM 3 C C13 U3D . . . M 7 154.008 118.766 165.877 1 64.14 ? C13 U3D 902 B 1 HETATM 4 C C14 U3D . . . M 7 153.708 117.6 164.88 1 64.14 ? C14 U3D 902 B 1 HETATM 5 C C15 U3D . . . M 7 152.606 117.958 163.845 1 64.14 ? C15 U3D 902 B 1 HETATM 6 C C16 U3D . . . M 7 153.159 117.943 162.36 1 64.14 ? C16 U3D 902 B 1 HETATM 7 C C17 U3D . . . M 7 153.277 116.502 161.776 1 64.14 ? C17 U3D 902 B 1 HETATM 8 C C18 U3D . . . M 7 152.994 116.46 160.256 1 64.14 ? C18 U3D 902 B 1 HETATM 9 C C19 U3D . . . M 7 153.5 115.141 159.601 1 64.14 ? C19 U3D 902 B 1 HETATM 10 C C20 U3D . . . M 7 153.191 115.089 158.076 1 64.14 ? C20 U3D 902 B 1 HETATM 11 C C23 U3D . . . M 7 154.101 116.644 156.549 1 64.14 ? C23 U3D 902 B 1 HETATM 12 C C24 U3D . . . M 7 155.492 117.157 156.153 1 64.14 ? C24 U3D 902 B 1 HETATM 13 C C25 U3D . . . M 7 155.815 116.717 154.721 1 64.14 ? C25 U3D 902 B 1 HETATM 14 C C31 U3D . . . M 7 157.969 113.413 153.611 1 64.14 ? C31 U3D 902 B 1 HETATM 15 C C32 U3D . . . M 7 159.465 112.955 153.463 1 64.14 ? C32 U3D 902 B 1 HETATM 16 C C34 U3D . . . M 7 161.035 111.272 152.767 1 64.14 ? C34 U3D 902 B 1 HETATM 17 C C35 U3D . . . M 7 158.692 110.67 152.754 1 64.14 ? C35 U3D 902 B 1 HETATM 18 C C36 U3D . . . M 7 159.556 112.201 151.125 1 64.14 ? C36 U3D 902 B 1 HETATM 19 C C38 U3D . . . M 7 156.596 117.432 158.237 1 64.14 ? C38 U3D 902 B 1 HETATM 20 C C40 U3D . . . M 7 158.014 117.58 158.934 1 64.14 ? C40 U3D 902 B 1 HETATM 21 C C41 U3D . . . M 7 157.858 117.64 160.54 1 64.14 ? C41 U3D 902 B 1 HETATM 22 C C42 U3D . . . M 7 159.248 117.583 161.28 1 64.14 ? C42 U3D 902 B 1 HETATM 23 C C43 U3D . . . M 7 159.15 116.972 162.728 1 64.14 ? C43 U3D 902 B 1 HETATM 24 C C44 U3D . . . M 7 158.854 118.046 163.846 1 64.14 ? C44 U3D 902 B 1 HETATM 25 C C45 U3D . . . M 7 159.899 117.976 165.062 1 64.14 ? C45 U3D 902 B 1 HETATM 26 C C46 U3D . . . M 7 159.526 116.865 166.103 1 64.14 ? C46 U3D 902 B 1 HETATM 27 C C47 U3D . . . M 7 160.261 117.142 167.445 1 64.14 ? C47 U3D 902 B 1 HETATM 28 C C48 U3D . . . M 7 160.05 116.37 168.574 1 64.14 ? C48 U3D 902 B 1 HETATM 29 C C01 U3D . . . M 7 161.098 129.958 163.767 1 64.14 ? C01 U3D 902 B 1 HETATM 30 C C02 U3D . . . M 7 160.349 128.66 163.485 1 64.14 ? C02 U3D 902 B 1 HETATM 31 C C03 U3D . . . M 7 159.318 128.322 164.59 1 64.14 ? C03 U3D 902 B 1 HETATM 32 C C04 U3D . . . M 7 159.011 126.775 164.697 1 64.14 ? C04 U3D 902 B 1 HETATM 33 C C05 U3D . . . M 7 158.42 126.373 166.095 1 64.14 ? C05 U3D 902 B 1 HETATM 34 C C06 U3D . . . M 7 158.565 124.849 166.373 1 64.14 ? C06 U3D 902 B 1 HETATM 35 C C07 U3D . . . M 7 157.28 124.203 167.02 1 64.14 ? C07 U3D 902 B 1 HETATM 36 C C08 U3D . . . M 7 157.268 122.629 166.918 1 64.14 ? C08 U3D 902 B 1 HETATM 37 C C09 U3D . . . M 7 156.095 122.092 167.781 1 64.14 ? C09 U3D 902 B 1 HETATM 38 C C10 U3D . . . M 7 155.614 120.838 167.642 1 64.14 ? C10 U3D 902 B 1 HETATM 39 C C49 U3D . . . M 7 159.058 115.144 168.598 1 64.14 ? C49 U3D 902 B 1 HETATM 40 C C50 U3D . . . M 7 158.401 115.061 170.015 1 64.14 ? C50 U3D 902 B 1 HETATM 41 C C51 U3D . . . M 7 159.114 114.093 170.994 1 64.14 ? C51 U3D 902 B 1 HETATM 42 C C52 U3D . . . M 7 158.181 113.742 172.173 1 64.14 ? C52 U3D 902 B 1 HETATM 43 C C53 U3D . . . M 7 158.85 113.715 173.575 1 64.14 ? C53 U3D 902 B 1 HETATM 44 C C54 U3D . . . M 7 158.769 112.34 174.266 1 64.14 ? C54 U3D 902 B 1 HETATM 45 C C55 U3D . . . M 7 158.923 112.46 175.794 1 64.14 ? C55 U3D 902 B 1 HETATM 46 C C56 U3D . . . M 7 159.455 111.194 176.426 1 64.14 ? C56 U3D 902 B 1 HETATM 47 N N33 U3D . . . M 7 159.673 111.775 152.54 1 64.14 ? N33 U3D 902 B 1 HETATM 48 O O21 U3D . . . M 7 152.093 114.851 157.697 1 64.14 ? O21 U3D 902 B 1 HETATM 49 O O22 U3D . . . M 7 154.231 115.353 157.129 1 64.14 ? O22 U3D 902 B 1 HETATM 50 O O26 U3D . . . M 7 157.111 117.181 154.379 1 64.14 ? O26 U3D 902 B 1 HETATM 51 O O28 U3D . . . M 7 159.523 116.577 153.601 1 64.14 ? O28 U3D 902 B 1 HETATM 52 O O29 U3D . . . M 7 157.607 115.962 152.147 1 64.14 ? O29 U3D 902 B 1 HETATM 53 O O30 U3D . . . M 7 157.975 114.624 154.372 1 64.14 ? O30 U3D 902 B 1 HETATM 54 O O37 U3D . . . M 7 156.451 116.637 157.034 1 64.14 ? O37 U3D 902 B 1 HETATM 55 O O39 U3D . . . M 7 155.661 117.968 158.71 1 64.14 ? O39 U3D 902 B 1 HETATM 56 P P27 U3D . . . M 7 158.091 116.093 153.577 1 64.14 ? P27 U3D 902 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 56 #