data_6WJ4 # _model_server_result.job_id g-Mwt1bS0nwyAk4GaWdTMw _model_server_result.datetime_utc '2024-11-13 21:34:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6WJ4 # _exptl.entry_id 6WJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WJ4 _cell.length_a 90.09 _cell.length_b 90.09 _cell.length_c 132.141 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -90.09 -90.09 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -90.09 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -90.09 0 5 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -90.09 0 0 6 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -90.09 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -90.09 -90.09 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O13 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O10 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'C20 H17 F3 N4 O4' _chem_comp.formula_weight 434.369 _chem_comp.id U3A _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 U3A doub 471 n n O13 C12 U3A sing 472 n n C14 C12 U3A sing 473 n n C14 N16 U3A sing 474 n n C12 C11 U3A doub 475 n n N16 C17 U3A doub 476 n n C11 N18 U3A sing 477 n n C11 C09 U3A sing 478 n n C17 N18 U3A sing 479 n n C17 C19 U3A sing 480 n n F27 C25 U3A sing 481 n n O10 C09 U3A doub 482 n n C09 N08 U3A sing 483 n n C19 C20 U3A doub 484 n y C19 C24 U3A sing 485 n y C20 C21 U3A sing 486 n y C25 C24 U3A sing 487 n n C25 F26 U3A sing 488 n n C25 F28 U3A sing 489 n n C24 C23 U3A doub 490 n y C21 C22 U3A doub 491 n y N08 C07 U3A sing 492 n n C23 C22 U3A sing 493 n y C07 C06 U3A sing 494 n n C01 O02 U3A sing 495 n n C06 C05 U3A sing 496 n n C04 C05 U3A doub 497 n y C04 C03 U3A sing 498 n y O02 C03 U3A sing 499 n n C05 C29 U3A sing 500 n y C03 N31 U3A doub 501 n y C29 C30 U3A doub 502 n y N31 C30 U3A sing 503 n y C29 H1 U3A sing 504 n n C01 H2 U3A sing 505 n n C01 H3 U3A sing 506 n n C01 H4 U3A sing 507 n n C04 H5 U3A sing 508 n n C06 H6 U3A sing 509 n n C06 H7 U3A sing 510 n n C07 H8 U3A sing 511 n n C07 H9 U3A sing 512 n n C20 H10 U3A sing 513 n n C21 H11 U3A sing 514 n n C22 H12 U3A sing 515 n n C23 H13 U3A sing 516 n n C30 H14 U3A sing 517 n n N08 H15 U3A sing 518 n n N18 H16 U3A sing 519 n n O13 H17 U3A sing 520 n n # _atom_sites.entry_id 6WJ4 _atom_sites.fract_transf_matrix[1][1] 0.0111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 U3A A 1 203 301 U3A 448 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 43 HOH HOH . H 6 HOH A 2 302 48 HOH HOH . H 6 HOH A 3 303 11 HOH HOH . H 6 HOH A 4 304 50 HOH HOH . H 6 HOH A 5 305 7 HOH HOH . H 6 HOH A 6 306 32 HOH HOH . H 6 HOH A 7 307 49 HOH HOH . H 6 HOH A 8 308 34 HOH HOH . H 6 HOH A 9 309 1 HOH HOH . H 6 HOH A 10 310 46 HOH HOH . H 6 HOH A 11 311 20 HOH HOH . H 6 HOH A 12 312 58 HOH HOH . H 6 HOH A 13 313 54 HOH HOH . H 6 HOH A 14 314 33 HOH HOH . H 6 HOH A 15 315 40 HOH HOH . H 6 HOH A 16 316 53 HOH HOH . H 6 HOH A 17 317 41 HOH HOH . H 6 HOH A 18 318 39 HOH HOH . H 6 HOH A 19 319 44 HOH HOH . H 6 HOH A 20 320 57 HOH HOH . H 6 HOH A 21 321 42 HOH HOH . H 6 HOH A 22 322 47 HOH HOH . H 6 HOH A 23 323 45 HOH HOH . H 6 HOH A 24 324 51 HOH HOH . H 6 HOH A 25 325 38 HOH HOH . H 6 HOH A 26 326 30 HOH HOH . H 6 HOH A 27 327 52 HOH HOH . H 6 HOH A 28 328 37 HOH HOH . H 6 HOH A 29 329 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 U3A . . . D 3 -14.858 -41.716 -16.533 1 97.12 ? C11 U3A 203 A 1 HETATM 2 C C12 U3A . . . D 3 -15.744 -41.314 -17.649 1 92.87 ? C12 U3A 203 A 1 HETATM 3 C C25 U3A . . . D 3 -15.261 -37.126 -14.544 1 147.59 ? C25 U3A 203 A 1 HETATM 4 C C29 U3A . . . D 3 -10.941 -42.183 -13.132 1 117.08 ? C29 U3A 203 A 1 HETATM 5 F F27 U3A . . . D 3 -15.753 -36.886 -15.803 1 149.41 ? F27 U3A 203 A 1 HETATM 6 F F28 U3A . . . D 3 -15.562 -36.058 -13.734 1 152.59 ? F28 U3A 203 A 1 HETATM 7 C C01 U3A . . . D 3 -14.765 -40.801 -10.347 1 108.2 ? C01 U3A 203 A 1 HETATM 8 C C03 U3A . . . D 3 -12.67 -40.861 -11.46 1 122.27 ? C03 U3A 203 A 1 HETATM 9 C C04 U3A . . . D 3 -13.008 -42.126 -11.93 1 127.15 ? C04 U3A 203 A 1 HETATM 10 C C05 U3A . . . D 3 -12.141 -42.823 -12.79 1 130 ? C05 U3A 203 A 1 HETATM 11 C C06 U3A . . . D 3 -12.476 -44.25 -13.342 1 132.43 ? C06 U3A 203 A 1 HETATM 12 C C07 U3A . . . D 3 -13.937 -44.385 -13.863 1 127.56 ? C07 U3A 203 A 1 HETATM 13 C C09 U3A . . . D 3 -14.682 -43.145 -15.997 1 102.47 ? C09 U3A 203 A 1 HETATM 14 C C14 U3A . . . D 3 -15.795 -39.857 -18.042 1 85.31 ? C14 U3A 203 A 1 HETATM 15 C C17 U3A . . . D 3 -14.11 -39.278 -16.22 1 104.74 ? C17 U3A 203 A 1 HETATM 16 C C19 U3A . . . D 3 -13.208 -38.281 -15.395 1 124.99 ? C19 U3A 203 A 1 HETATM 17 C C20 U3A . . . D 3 -11.86 -38.421 -15.436 1 123.47 ? C20 U3A 203 A 1 HETATM 18 C C21 U3A . . . D 3 -11.049 -37.558 -14.702 1 131.63 ? C21 U3A 203 A 1 HETATM 19 C C22 U3A . . . D 3 -11.627 -36.563 -13.925 1 135.66 ? C22 U3A 203 A 1 HETATM 20 C C23 U3A . . . D 3 -12.973 -36.429 -13.878 1 139.45 ? C23 U3A 203 A 1 HETATM 21 C C24 U3A . . . D 3 -13.786 -37.287 -14.606 1 142.93 ? C24 U3A 203 A 1 HETATM 22 C C30 U3A . . . D 3 -10.655 -40.922 -12.634 1 112.17 ? C30 U3A 203 A 1 HETATM 23 F F26 U3A . . . D 3 -15.827 -38.236 -14.036 1 140.07 ? F26 U3A 203 A 1 HETATM 24 N N08 U3A . . . D 3 -14.217 -43.184 -14.622 1 116.86 ? N08 U3A 203 A 1 HETATM 25 N N16 U3A . . . D 3 -14.98 -38.854 -17.326 1 95.93 ? N16 U3A 203 A 1 HETATM 26 N N18 U3A . . . D 3 -14.057 -40.71 -15.829 1 101.9 ? N18 U3A 203 A 1 HETATM 27 N N31 U3A . . . D 3 -11.513 -40.289 -11.817 1 115.61 ? N31 U3A 203 A 1 HETATM 28 O O02 U3A . . . D 3 -13.546 -40.165 -10.603 1 118.85 ? O02 U3A 203 A 1 HETATM 29 O O10 U3A . . . D 3 -14.896 -44.14 -16.658 1 108.68 ? O10 U3A 203 A 1 HETATM 30 O O13 U3A . . . D 3 -16.545 -42.304 -18.355 1 104.43 ? O13 U3A 203 A 1 HETATM 31 O O15 U3A . . . D 3 -16.49 -39.508 -18.927 1 68.8 ? O15 U3A 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #