data_6WJ4 # _model_server_result.job_id imN-pFH2spANBDh8cgwVtw _model_server_result.datetime_utc '2024-11-13 21:31:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6WJ4 # _exptl.entry_id 6WJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WJ4 _cell.length_a 90.09 _cell.length_b 90.09 _cell.length_c 132.141 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -90.09 -90.09 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -90.09 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -90.09 0 5 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -90.09 0 0 6 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -90.09 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -90.09 -90.09 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O13 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O10 U3A . A U3A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 277 n n C21 N02 QQ4 sing 278 n n C20 C19 QQ4 sing 279 n n C19 C42 QQ4 sing 280 n n N02 C12 QQ4 sing 281 n n N02 C42 QQ4 sing 282 n n C12 C11 QQ4 sing 283 n n C42 O05 QQ4 doub 284 n n C38 C41 QQ4 sing 285 n n C38 N07 QQ4 sing 286 n n C41 C40 QQ4 sing 287 n n C10 C09 QQ4 sing 288 n n C11 C01 QQ4 sing 289 n n C40 C39 QQ4 sing 290 n n N07 C09 QQ4 sing 291 n n N07 C39 QQ4 sing 292 n n C01 C02 QQ4 sing 293 n n C01 N03 QQ4 sing 294 n n C08 C09 QQ4 sing 295 n n C08 C07 QQ4 sing 296 n n C02 C03 QQ4 sing 297 n n C39 O07 QQ4 doub 298 n n C26 C27 QQ4 sing 299 n n C26 N04 QQ4 sing 300 n n C22 N03 QQ4 sing 301 n n C22 C25 QQ4 sing 302 n n N03 C23 QQ4 sing 303 n n C06 C07 QQ4 sing 304 n n C06 C05 QQ4 sing 305 n n C07 N06 QQ4 sing 306 n n C27 C28 QQ4 sing 307 n n C03 N04 QQ4 sing 308 n n C03 C04 QQ4 sing 309 n n C25 C24 QQ4 sing 310 n n N04 C29 QQ4 sing 311 n n C04 C05 QQ4 sing 312 n n O04 C30 QQ4 doub 313 n n C23 O02 QQ4 doub 314 n n C23 C24 QQ4 sing 315 n n C05 N05 QQ4 sing 316 n n N06 C34 QQ4 sing 317 n n N06 C37 QQ4 sing 318 n n C34 C35 QQ4 sing 319 n n C28 C29 QQ4 sing 320 n n C29 O03 QQ4 doub 321 n n C30 N05 QQ4 sing 322 n n C30 C31 QQ4 sing 323 n n N05 C33 QQ4 sing 324 n n C37 O06 QQ4 doub 325 n n C37 C36 QQ4 sing 326 n n C35 C36 QQ4 sing 327 n n C31 C32 QQ4 sing 328 n n C33 C32 QQ4 sing 329 n n C12 H1 QQ4 sing 330 n n C12 H2 QQ4 sing 331 n n C11 H3 QQ4 sing 332 n n C11 H4 QQ4 sing 333 n n C10 H5 QQ4 sing 334 n n C10 H6 QQ4 sing 335 n n C10 H7 QQ4 sing 336 n n C01 H8 QQ4 sing 337 n n C02 H9 QQ4 sing 338 n n C02 H10 QQ4 sing 339 n n C03 H11 QQ4 sing 340 n n C04 H12 QQ4 sing 341 n n C04 H13 QQ4 sing 342 n n C05 H14 QQ4 sing 343 n n C06 H15 QQ4 sing 344 n n C06 H16 QQ4 sing 345 n n C07 H17 QQ4 sing 346 n n C08 H18 QQ4 sing 347 n n C08 H19 QQ4 sing 348 n n C09 H20 QQ4 sing 349 n n C19 H21 QQ4 sing 350 n n C19 H22 QQ4 sing 351 n n C20 H23 QQ4 sing 352 n n C20 H24 QQ4 sing 353 n n C21 H25 QQ4 sing 354 n n C21 H26 QQ4 sing 355 n n C22 H27 QQ4 sing 356 n n C22 H28 QQ4 sing 357 n n C24 H29 QQ4 sing 358 n n C24 H30 QQ4 sing 359 n n C25 H31 QQ4 sing 360 n n C25 H32 QQ4 sing 361 n n C26 H33 QQ4 sing 362 n n C26 H34 QQ4 sing 363 n n C27 H35 QQ4 sing 364 n n C27 H36 QQ4 sing 365 n n C28 H37 QQ4 sing 366 n n C28 H38 QQ4 sing 367 n n C31 H39 QQ4 sing 368 n n C31 H40 QQ4 sing 369 n n C32 H41 QQ4 sing 370 n n C32 H42 QQ4 sing 371 n n C33 H43 QQ4 sing 372 n n C33 H44 QQ4 sing 373 n n C34 H45 QQ4 sing 374 n n C34 H46 QQ4 sing 375 n n C35 H47 QQ4 sing 376 n n C35 H48 QQ4 sing 377 n n C36 H49 QQ4 sing 378 n n C36 H50 QQ4 sing 379 n n C38 H51 QQ4 sing 380 n n C38 H52 QQ4 sing 381 n n C40 H53 QQ4 sing 382 n n C40 H54 QQ4 sing 383 n n C41 H55 QQ4 sing 384 n n C41 H56 QQ4 sing 385 n n # _atom_sites.entry_id 6WJ4 _atom_sites.fract_transf_matrix[1][1] 0.0111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 U3A A 1 203 301 U3A 448 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 43 HOH HOH . H 6 HOH A 2 302 48 HOH HOH . H 6 HOH A 3 303 11 HOH HOH . H 6 HOH A 4 304 50 HOH HOH . H 6 HOH A 5 305 7 HOH HOH . H 6 HOH A 6 306 32 HOH HOH . H 6 HOH A 7 307 49 HOH HOH . H 6 HOH A 8 308 34 HOH HOH . H 6 HOH A 9 309 1 HOH HOH . H 6 HOH A 10 310 46 HOH HOH . H 6 HOH A 11 311 20 HOH HOH . H 6 HOH A 12 312 58 HOH HOH . H 6 HOH A 13 313 54 HOH HOH . H 6 HOH A 14 314 33 HOH HOH . H 6 HOH A 15 315 40 HOH HOH . H 6 HOH A 16 316 53 HOH HOH . H 6 HOH A 17 317 41 HOH HOH . H 6 HOH A 18 318 39 HOH HOH . H 6 HOH A 19 319 44 HOH HOH . H 6 HOH A 20 320 57 HOH HOH . H 6 HOH A 21 321 42 HOH HOH . H 6 HOH A 22 322 47 HOH HOH . H 6 HOH A 23 323 45 HOH HOH . H 6 HOH A 24 324 51 HOH HOH . H 6 HOH A 25 325 38 HOH HOH . H 6 HOH A 26 326 30 HOH HOH . H 6 HOH A 27 327 52 HOH HOH . H 6 HOH A 28 328 37 HOH HOH . H 6 HOH A 29 329 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 QQ4 . . . E 4 -31.414 -48.05 -9.181 1 136.39 ? C12 QQ4 204 A 1 HETATM 2 C C11 QQ4 . . . E 4 -31.106 -47.871 -10.666 1 125.7 ? C11 QQ4 204 A 1 HETATM 3 C C01 QQ4 . . . E 4 -30.25 -46.619 -10.857 1 126.99 ? C01 QQ4 204 A 1 HETATM 4 C C02 QQ4 . . . E 4 -31.095 -45.342 -11.095 1 127.06 ? C02 QQ4 204 A 1 HETATM 5 C C03 QQ4 . . . E 4 -31.76 -45.117 -12.464 1 126.88 ? C03 QQ4 204 A 1 HETATM 6 C C04 QQ4 . . . E 4 -31.965 -43.593 -12.658 1 122.63 ? C04 QQ4 204 A 1 HETATM 7 C C05 QQ4 . . . E 4 -33.383 -43.136 -13.041 1 128.44 ? C05 QQ4 204 A 1 HETATM 8 C C06 QQ4 . . . E 4 -34.182 -42.721 -11.798 1 113.58 ? C06 QQ4 204 A 1 HETATM 9 C C07 QQ4 . . . E 4 -35.546 -42.145 -12.186 1 109.19 ? C07 QQ4 204 A 1 HETATM 10 C C08 QQ4 . . . E 4 -35.666 -40.71 -11.67 1 107.32 ? C08 QQ4 204 A 1 HETATM 11 C C19 QQ4 . . . E 4 -28.744 -50.423 -7.823 1 139.01 ? C19 QQ4 204 A 1 HETATM 12 C C20 QQ4 . . . E 4 -28.18 -49.052 -7.522 1 136.92 ? C20 QQ4 204 A 1 HETATM 13 C C21 QQ4 . . . E 4 -29.383 -48.12 -7.569 1 140.75 ? C21 QQ4 204 A 1 HETATM 14 C C22 QQ4 . . . E 4 -27.781 -46.514 -11.608 1 100.25 ? C22 QQ4 204 A 1 HETATM 15 C C23 QQ4 . . . E 4 -29.262 -47.603 -13.1 1 102.82 ? C23 QQ4 204 A 1 HETATM 16 C C24 QQ4 . . . E 4 -27.857 -47.648 -13.703 1 96.21 ? C24 QQ4 204 A 1 HETATM 17 C C25 QQ4 . . . E 4 -26.967 -47.45 -12.49 1 97.11 ? C25 QQ4 204 A 1 HETATM 18 C C26 QQ4 . . . E 4 -33.932 -46.181 -11.489 1 132.82 ? C26 QQ4 204 A 1 HETATM 19 C C27 QQ4 . . . E 4 -35.246 -46.589 -12.16 1 134.62 ? C27 QQ4 204 A 1 HETATM 20 C C28 QQ4 . . . E 4 -34.822 -47.137 -13.519 1 134.83 ? C28 QQ4 204 A 1 HETATM 21 C C29 QQ4 . . . E 4 -33.507 -46.433 -13.804 1 136.56 ? C29 QQ4 204 A 1 HETATM 22 C C30 QQ4 . . . E 4 -32.825 -40.654 -13.663 1 139.62 ? C30 QQ4 204 A 1 HETATM 23 C C31 QQ4 . . . E 4 -32.985 -39.816 -14.916 1 136.04 ? C31 QQ4 204 A 1 HETATM 24 C C32 QQ4 . . . E 4 -34.038 -40.55 -15.703 1 132.34 ? C32 QQ4 204 A 1 HETATM 25 C C33 QQ4 . . . E 4 -33.8 -42.016 -15.354 1 134.31 ? C33 QQ4 204 A 1 HETATM 26 C C42 QQ4 . . . E 4 -29.952 -50.133 -8.696 1 146.89 ? C42 QQ4 204 A 1 HETATM 27 N N02 QQ4 . . . E 4 -30.311 -48.729 -8.523 1 146.36 ? N02 QQ4 204 A 1 HETATM 28 N N03 QQ4 . . . E 4 -29.177 -46.891 -11.819 1 115.68 ? N03 QQ4 204 A 1 HETATM 29 N N04 QQ4 . . . E 4 -33.006 -45.862 -12.573 1 136.86 ? N04 QQ4 204 A 1 HETATM 30 N N05 QQ4 . . . E 4 -33.334 -42.003 -13.957 1 141.41 ? N05 QQ4 204 A 1 HETATM 31 O O02 QQ4 . . . E 4 -30.233 -48.066 -13.6 1 102.84 ? O02 QQ4 204 A 1 HETATM 32 O O03 QQ4 . . . E 4 -32.985 -46.351 -14.863 1 128.13 ? O03 QQ4 204 A 1 HETATM 33 O O04 QQ4 . . . E 4 -32.372 -40.277 -12.633 1 127.26 ? O04 QQ4 204 A 1 HETATM 34 O O05 QQ4 . . . E 4 -30.503 -50.911 -9.4 1 149.08 ? O05 QQ4 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #