data_6WJB # _model_server_result.job_id xc-KbCJXjXtcq-peX8PzlQ _model_server_result.datetime_utc '2024-11-13 01:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6WJB # _exptl.entry_id 6WJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WJB _cell.length_a 123.04 _cell.length_b 75.455 _cell.length_c 79.156 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 405 n n C1' O1' UD1 sing 406 n n C1' O5' UD1 sing 407 n n C1' H1' UD1 sing 408 n n C2' C3' UD1 sing 409 n n C2' N2' UD1 sing 410 n n C2' H2' UD1 sing 411 n n C3' C4' UD1 sing 412 n n C3' O3' UD1 sing 413 n n C3' H3' UD1 sing 414 n n C4' C5' UD1 sing 415 n n C4' O4' UD1 sing 416 n n C4' H4' UD1 sing 417 n n C5' C6' UD1 sing 418 n n C5' O5' UD1 sing 419 n n C5' H5' UD1 sing 420 n n C6' O6' UD1 sing 421 n n C6' "H6'1" UD1 sing 422 n n C6' "H6'2" UD1 sing 423 n n C7' C8' UD1 sing 424 n n C7' N2' UD1 sing 425 n n C7' O7' UD1 doub 426 n n C8' "H8'1" UD1 sing 427 n n C8' "H8'2" UD1 sing 428 n n C8' "H8'3" UD1 sing 429 n n N2' HN2' UD1 sing 430 n n O1' PB UD1 sing 431 n n O3' HO3' UD1 sing 432 n n O4' HO4' UD1 sing 433 n n O6' HO6' UD1 sing 434 n n N1 C2 UD1 sing 435 n n N1 C6 UD1 sing 436 n n N1 C1B UD1 sing 437 n n C2 N3 UD1 sing 438 n n C2 O2 UD1 doub 439 n n N3 C4 UD1 sing 440 n n N3 HN3 UD1 sing 441 n n C4 C5 UD1 sing 442 n n C4 O4 UD1 doub 443 n n C5 C6 UD1 doub 444 n n C5 H5 UD1 sing 445 n n C6 H6 UD1 sing 446 n n C1B C2B UD1 sing 447 n n C1B O4B UD1 sing 448 n n C1B H1B UD1 sing 449 n n C2B O2' UD1 sing 450 n n C2B C3B UD1 sing 451 n n C2B H2B UD1 sing 452 n n O2' HO2' UD1 sing 453 n n C3B C4B UD1 sing 454 n n C3B O3B UD1 sing 455 n n C3B H3B UD1 sing 456 n n C4B O4B UD1 sing 457 n n C4B C5B UD1 sing 458 n n C4B H4B UD1 sing 459 n n O3B HO3A UD1 sing 460 n n C5B O5B UD1 sing 461 n n C5B "H5'1" UD1 sing 462 n n C5B "H5'2" UD1 sing 463 n n O5B PA UD1 sing 464 n n PA O1A UD1 doub 465 n n PA O2A UD1 sing 466 n n PA O3A UD1 sing 467 n n O2A HOA2 UD1 sing 468 n n O3A PB UD1 sing 469 n n PB O1B UD1 doub 470 n n PB O2B UD1 sing 471 n n O2B HOB2 UD1 sing 472 n n # _atom_sites.entry_id 6WJB _atom_sites.fract_transf_matrix[1][1] 0.008127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 1 NAD NAD . D 3 UD1 A 1 402 2 UD1 UD1 . E 2 NAD B 1 401 2 NAD NAD . F 3 UD1 B 1 402 1 UD1 UD1 . G 4 HOH A 1 501 37 HOH HOH . G 4 HOH A 2 502 18 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 116 HOH HOH . G 4 HOH A 5 505 166 HOH HOH . G 4 HOH A 6 506 74 HOH HOH . G 4 HOH A 7 507 144 HOH HOH . G 4 HOH A 8 508 59 HOH HOH . G 4 HOH A 9 509 192 HOH HOH . G 4 HOH A 10 510 32 HOH HOH . G 4 HOH A 11 511 155 HOH HOH . G 4 HOH A 12 512 260 HOH HOH . G 4 HOH A 13 513 10 HOH HOH . G 4 HOH A 14 514 167 HOH HOH . G 4 HOH A 15 515 127 HOH HOH . G 4 HOH A 16 516 53 HOH HOH . G 4 HOH A 17 517 8 HOH HOH . G 4 HOH A 18 518 212 HOH HOH . G 4 HOH A 19 519 241 HOH HOH . G 4 HOH A 20 520 75 HOH HOH . G 4 HOH A 21 521 77 HOH HOH . G 4 HOH A 22 522 28 HOH HOH . G 4 HOH A 23 523 36 HOH HOH . G 4 HOH A 24 524 91 HOH HOH . G 4 HOH A 25 525 118 HOH HOH . G 4 HOH A 26 526 176 HOH HOH . G 4 HOH A 27 527 262 HOH HOH . G 4 HOH A 28 528 165 HOH HOH . G 4 HOH A 29 529 217 HOH HOH . G 4 HOH A 30 530 30 HOH HOH . G 4 HOH A 31 531 1 HOH HOH . G 4 HOH A 32 532 113 HOH HOH . G 4 HOH A 33 533 27 HOH HOH . G 4 HOH A 34 534 117 HOH HOH . G 4 HOH A 35 535 4 HOH HOH . G 4 HOH A 36 536 15 HOH HOH . G 4 HOH A 37 537 140 HOH HOH . G 4 HOH A 38 538 2 HOH HOH . G 4 HOH A 39 539 57 HOH HOH . G 4 HOH A 40 540 190 HOH HOH . G 4 HOH A 41 541 232 HOH HOH . G 4 HOH A 42 542 17 HOH HOH . G 4 HOH A 43 543 44 HOH HOH . G 4 HOH A 44 544 13 HOH HOH . G 4 HOH A 45 545 151 HOH HOH . G 4 HOH A 46 546 39 HOH HOH . G 4 HOH A 47 547 72 HOH HOH . G 4 HOH A 48 548 63 HOH HOH . G 4 HOH A 49 549 14 HOH HOH . G 4 HOH A 50 550 161 HOH HOH . G 4 HOH A 51 551 246 HOH HOH . G 4 HOH A 52 552 58 HOH HOH . G 4 HOH A 53 553 208 HOH HOH . G 4 HOH A 54 554 73 HOH HOH . G 4 HOH A 55 555 54 HOH HOH . G 4 HOH A 56 556 120 HOH HOH . G 4 HOH A 57 557 92 HOH HOH . G 4 HOH A 58 558 195 HOH HOH . G 4 HOH A 59 559 254 HOH HOH . G 4 HOH A 60 560 81 HOH HOH . G 4 HOH A 61 561 227 HOH HOH . G 4 HOH A 62 562 177 HOH HOH . G 4 HOH A 63 563 198 HOH HOH . G 4 HOH A 64 564 25 HOH HOH . G 4 HOH A 65 565 114 HOH HOH . G 4 HOH A 66 566 158 HOH HOH . G 4 HOH A 67 567 86 HOH HOH . G 4 HOH A 68 568 21 HOH HOH . G 4 HOH A 69 569 236 HOH HOH . G 4 HOH A 70 570 172 HOH HOH . G 4 HOH A 71 571 215 HOH HOH . G 4 HOH A 72 572 49 HOH HOH . G 4 HOH A 73 573 163 HOH HOH . G 4 HOH A 74 574 214 HOH HOH . G 4 HOH A 75 575 183 HOH HOH . G 4 HOH A 76 576 12 HOH HOH . G 4 HOH A 77 577 168 HOH HOH . G 4 HOH A 78 578 276 HOH HOH . G 4 HOH A 79 579 206 HOH HOH . G 4 HOH A 80 580 237 HOH HOH . G 4 HOH A 81 581 66 HOH HOH . G 4 HOH A 82 582 80 HOH HOH . G 4 HOH A 83 583 71 HOH HOH . G 4 HOH A 84 584 125 HOH HOH . G 4 HOH A 85 585 275 HOH HOH . G 4 HOH A 86 586 134 HOH HOH . G 4 HOH A 87 587 31 HOH HOH . G 4 HOH A 88 588 152 HOH HOH . G 4 HOH A 89 589 108 HOH HOH . G 4 HOH A 90 590 119 HOH HOH . G 4 HOH A 91 591 164 HOH HOH . G 4 HOH A 92 592 97 HOH HOH . G 4 HOH A 93 593 169 HOH HOH . G 4 HOH A 94 594 180 HOH HOH . G 4 HOH A 95 595 239 HOH HOH . G 4 HOH A 96 596 203 HOH HOH . G 4 HOH A 97 597 153 HOH HOH . G 4 HOH A 98 598 269 HOH HOH . G 4 HOH A 99 599 189 HOH HOH . G 4 HOH A 100 600 99 HOH HOH . G 4 HOH A 101 601 240 HOH HOH . G 4 HOH A 102 602 76 HOH HOH . G 4 HOH A 103 603 230 HOH HOH . G 4 HOH A 104 604 128 HOH HOH . G 4 HOH A 105 605 235 HOH HOH . G 4 HOH A 106 606 261 HOH HOH . G 4 HOH A 107 607 171 HOH HOH . H 4 HOH B 1 501 100 HOH HOH . H 4 HOH B 2 502 55 HOH HOH . H 4 HOH B 3 503 79 HOH HOH . H 4 HOH B 4 504 45 HOH HOH . H 4 HOH B 5 505 138 HOH HOH . H 4 HOH B 6 506 228 HOH HOH . H 4 HOH B 7 507 87 HOH HOH . H 4 HOH B 8 508 43 HOH HOH . H 4 HOH B 9 509 9 HOH HOH . H 4 HOH B 10 510 82 HOH HOH . H 4 HOH B 11 511 34 HOH HOH . H 4 HOH B 12 512 70 HOH HOH . H 4 HOH B 13 513 160 HOH HOH . H 4 HOH B 14 514 231 HOH HOH . H 4 HOH B 15 515 41 HOH HOH . H 4 HOH B 16 516 84 HOH HOH . H 4 HOH B 17 517 11 HOH HOH . H 4 HOH B 18 518 26 HOH HOH . H 4 HOH B 19 519 68 HOH HOH . H 4 HOH B 20 520 56 HOH HOH . H 4 HOH B 21 521 65 HOH HOH . H 4 HOH B 22 522 141 HOH HOH . H 4 HOH B 23 523 47 HOH HOH . H 4 HOH B 24 524 95 HOH HOH . H 4 HOH B 25 525 229 HOH HOH . H 4 HOH B 26 526 24 HOH HOH . H 4 HOH B 27 527 106 HOH HOH . H 4 HOH B 28 528 29 HOH HOH . H 4 HOH B 29 529 35 HOH HOH . H 4 HOH B 30 530 64 HOH HOH . H 4 HOH B 31 531 16 HOH HOH . H 4 HOH B 32 532 50 HOH HOH . H 4 HOH B 33 533 98 HOH HOH . H 4 HOH B 34 534 219 HOH HOH . H 4 HOH B 35 535 38 HOH HOH . H 4 HOH B 36 536 5 HOH HOH . H 4 HOH B 37 537 123 HOH HOH . H 4 HOH B 38 538 115 HOH HOH . H 4 HOH B 39 539 102 HOH HOH . H 4 HOH B 40 540 67 HOH HOH . H 4 HOH B 41 541 130 HOH HOH . H 4 HOH B 42 542 182 HOH HOH . H 4 HOH B 43 543 145 HOH HOH . H 4 HOH B 44 544 104 HOH HOH . H 4 HOH B 45 545 6 HOH HOH . H 4 HOH B 46 546 213 HOH HOH . H 4 HOH B 47 547 147 HOH HOH . H 4 HOH B 48 548 96 HOH HOH . H 4 HOH B 49 549 110 HOH HOH . H 4 HOH B 50 550 60 HOH HOH . H 4 HOH B 51 551 270 HOH HOH . H 4 HOH B 52 552 124 HOH HOH . H 4 HOH B 53 553 52 HOH HOH . H 4 HOH B 54 554 101 HOH HOH . H 4 HOH B 55 555 135 HOH HOH . H 4 HOH B 56 556 139 HOH HOH . H 4 HOH B 57 557 89 HOH HOH . H 4 HOH B 58 558 175 HOH HOH . H 4 HOH B 59 559 33 HOH HOH . H 4 HOH B 60 560 277 HOH HOH . H 4 HOH B 61 561 234 HOH HOH . H 4 HOH B 62 562 193 HOH HOH . H 4 HOH B 63 563 90 HOH HOH . H 4 HOH B 64 564 69 HOH HOH . H 4 HOH B 65 565 132 HOH HOH . H 4 HOH B 66 566 85 HOH HOH . H 4 HOH B 67 567 22 HOH HOH . H 4 HOH B 68 568 148 HOH HOH . H 4 HOH B 69 569 129 HOH HOH . H 4 HOH B 70 570 187 HOH HOH . H 4 HOH B 71 571 156 HOH HOH . H 4 HOH B 72 572 188 HOH HOH . H 4 HOH B 73 573 226 HOH HOH . H 4 HOH B 74 574 46 HOH HOH . H 4 HOH B 75 575 42 HOH HOH . H 4 HOH B 76 576 201 HOH HOH . H 4 HOH B 77 577 20 HOH HOH . H 4 HOH B 78 578 133 HOH HOH . H 4 HOH B 79 579 23 HOH HOH . H 4 HOH B 80 580 222 HOH HOH . H 4 HOH B 81 581 88 HOH HOH . H 4 HOH B 82 582 272 HOH HOH . H 4 HOH B 83 583 202 HOH HOH . H 4 HOH B 84 584 159 HOH HOH . H 4 HOH B 85 585 112 HOH HOH . H 4 HOH B 86 586 61 HOH HOH . H 4 HOH B 87 587 93 HOH HOH . H 4 HOH B 88 588 94 HOH HOH . H 4 HOH B 89 589 103 HOH HOH . H 4 HOH B 90 590 197 HOH HOH . H 4 HOH B 91 591 157 HOH HOH . H 4 HOH B 92 592 218 HOH HOH . H 4 HOH B 93 593 122 HOH HOH . H 4 HOH B 94 594 40 HOH HOH . H 4 HOH B 95 595 233 HOH HOH . H 4 HOH B 96 596 173 HOH HOH . H 4 HOH B 97 597 170 HOH HOH . H 4 HOH B 98 598 83 HOH HOH . H 4 HOH B 99 599 3 HOH HOH . H 4 HOH B 100 600 185 HOH HOH . H 4 HOH B 101 601 259 HOH HOH . H 4 HOH B 102 602 199 HOH HOH . H 4 HOH B 103 603 271 HOH HOH . H 4 HOH B 104 604 207 HOH HOH . H 4 HOH B 105 605 179 HOH HOH . H 4 HOH B 106 606 105 HOH HOH . H 4 HOH B 107 607 154 HOH HOH . H 4 HOH B 108 608 62 HOH HOH . H 4 HOH B 109 609 111 HOH HOH . H 4 HOH B 110 610 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . D 3 42.913 57.493 -7.7 1 53.24 ? C1' UD1 402 A 1 HETATM 2 O O1' UD1 . . . D 3 41.745 57.719 -8.432 1 47.96 ? O1' UD1 402 A 1 HETATM 3 N N1 UD1 . . . D 3 39.909 56.23 -16.481 1 42.65 ? N1 UD1 402 A 1 HETATM 4 C C2 UD1 . . . D 3 39.512 55.967 -17.852 1 43.87 ? C2 UD1 402 A 1 HETATM 5 N N3 UD1 . . . D 3 39.902 54.756 -18.386 1 44.74 ? N3 UD1 402 A 1 HETATM 6 C C4 UD1 . . . D 3 40.614 53.874 -17.696 1 46.9 ? C4 UD1 402 A 1 HETATM 7 C C5 UD1 . . . D 3 41.027 54.161 -16.294 1 39.68 ? C5 UD1 402 A 1 HETATM 8 C C6 UD1 . . . D 3 40.65 55.373 -15.743 1 39.74 ? C6 UD1 402 A 1 HETATM 9 O O2 UD1 . . . D 3 38.852 56.744 -18.529 1 43.55 ? O2 UD1 402 A 1 HETATM 10 O O4 UD1 . . . D 3 40.932 52.821 -18.227 1 48.56 ? O4 UD1 402 A 1 HETATM 11 C C1B UD1 . . . D 3 39.557 57.493 -15.873 1 40.35 ? C1B UD1 402 A 1 HETATM 12 C C2B UD1 . . . D 3 38.836 57.421 -14.586 1 46.1 ? C2B UD1 402 A 1 HETATM 13 O O2' UD1 . . . D 3 37.474 57.255 -14.785 1 44.91 ? O2' UD1 402 A 1 HETATM 14 C C3B UD1 . . . D 3 39.145 58.75 -13.994 1 41.66 ? C3B UD1 402 A 1 HETATM 15 C C4B UD1 . . . D 3 40.515 59.05 -14.489 1 40.95 ? C4B UD1 402 A 1 HETATM 16 O O4B UD1 . . . D 3 40.717 58.243 -15.619 1 40.79 ? O4B UD1 402 A 1 HETATM 17 O O3B UD1 . . . D 3 38.288 59.741 -14.463 1 33.43 ? O3B UD1 402 A 1 HETATM 18 C C5B UD1 . . . D 3 41.594 58.856 -13.442 1 29.54 ? C5B UD1 402 A 1 HETATM 19 O O5B UD1 . . . D 3 41.504 57.554 -12.939 1 35.37 ? O5B UD1 402 A 1 HETATM 20 P PA UD1 . . . D 3 42.523 57.007 -11.845 1 36.96 ? PA UD1 402 A 1 HETATM 21 O O1A UD1 . . . D 3 43.874 56.803 -12.481 1 35.79 ? O1A UD1 402 A 1 HETATM 22 O O2A UD1 . . . D 3 41.952 55.737 -11.286 1 35.18 ? O2A UD1 402 A 1 HETATM 23 O O3A UD1 . . . D 3 42.745 58.043 -10.666 1 40.33 ? O3A UD1 402 A 1 HETATM 24 P PB UD1 . . . D 3 41.746 58.717 -9.656 1 36.03 ? PB UD1 402 A 1 HETATM 25 O O1B UD1 . . . D 3 40.418 58.831 -10.342 1 33.45 ? O1B UD1 402 A 1 HETATM 26 O O2B UD1 . . . D 3 42.218 60.116 -9.283 1 34.1 ? O2B UD1 402 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #