data_6WJC # _model_server_result.job_id OcG9urpGxr1Voob5DZ5zuQ _model_server_result.datetime_utc '2024-11-01 09:36:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 6WJC # _exptl.entry_id 6WJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.77 _cell.angle_gamma 90 _cell.entry_id 6WJC _cell.length_a 122.148 _cell.length_b 150.429 _cell.length_c 76.927 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 98 1_555 A SG CYS 187 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 424 A CYS 391 1_555 A SG CYS 427 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 7 C CYS 3 1_555 B SG CYS 28 C CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 21 C CYS 17 1_555 B SG CYS 46 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 50 C CYS 46 1_555 B SG CYS 61 C CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 62 C CYS 58 1_555 B SG CYS 67 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 454 A CYS 421 1_555 C C2 ACM . A ACM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 430 n n CBA CAB Y01 sing 431 n n CBA CAN Y01 sing 432 n n CAN CAJ Y01 sing 433 n n CAJ CAO Y01 sing 434 n n CAO CBB Y01 sing 435 n n CBB CAC Y01 sing 436 n n CBB CBE Y01 sing 437 n n CBE CAP Y01 sing 438 n n CBE CBI Y01 sing 439 n n CAP CAQ Y01 sing 440 n n CAQ CBG Y01 sing 441 n n CBG CBI Y01 sing 442 n n CBG CBD Y01 sing 443 n n CBI CAE Y01 sing 444 n n CBI CAU Y01 sing 445 n n CAU CAS Y01 sing 446 n n CAS CBF Y01 sing 447 n n CBF CBD Y01 sing 448 n n CBF CBH Y01 sing 449 n n CBD CAK Y01 sing 450 n n CAK CAI Y01 sing 451 n n CAI CAZ Y01 doub 452 n n CAZ CAV Y01 sing 453 n n CAZ CBH Y01 sing 454 n n CAV CBC Y01 sing 455 n n CBH CAD Y01 sing 456 n n CBH CAT Y01 sing 457 n n CAT CAR Y01 sing 458 n n CAR CBC Y01 sing 459 n n CBC OAW Y01 sing 460 n n OAW CAY Y01 sing 461 n n CAY OAG Y01 doub 462 n n CAY CAM Y01 sing 463 n n CAM CAL Y01 sing 464 n n CAL CAX Y01 sing 465 n n CAX OAH Y01 sing 466 n n CAX OAF Y01 doub 467 n n CAA HAA1 Y01 sing 468 n n CAA HAA2 Y01 sing 469 n n CAA HAA3 Y01 sing 470 n n CBA HBA Y01 sing 471 n n CAB HAB1 Y01 sing 472 n n CAB HAB2 Y01 sing 473 n n CAB HAB3 Y01 sing 474 n n CAN HAN1 Y01 sing 475 n n CAN HAN2 Y01 sing 476 n n CAJ HAJ1 Y01 sing 477 n n CAJ HAJ2 Y01 sing 478 n n CAO HAO1 Y01 sing 479 n n CAO HAO2 Y01 sing 480 n n CBB HBB Y01 sing 481 n n CAC HAC1 Y01 sing 482 n n CAC HAC2 Y01 sing 483 n n CAC HAC3 Y01 sing 484 n n CBE HBE Y01 sing 485 n n CAP HAP1 Y01 sing 486 n n CAP HAP2 Y01 sing 487 n n CAQ HAQ1 Y01 sing 488 n n CAQ HAQ2 Y01 sing 489 n n CBG HBG Y01 sing 490 n n CBD HBD Y01 sing 491 n n CAE HAE1 Y01 sing 492 n n CAE HAE2 Y01 sing 493 n n CAE HAE3 Y01 sing 494 n n CAU HAU1 Y01 sing 495 n n CAU HAU2 Y01 sing 496 n n CAS HAS1 Y01 sing 497 n n CAS HAS2 Y01 sing 498 n n CBF HBF Y01 sing 499 n n CAK HAK1 Y01 sing 500 n n CAK HAK2 Y01 sing 501 n n CAI HAI Y01 sing 502 n n CAV HAV1 Y01 sing 503 n n CAV HAV2 Y01 sing 504 n n CBC HBC Y01 sing 505 n n CAD HAD1 Y01 sing 506 n n CAD HAD2 Y01 sing 507 n n CAD HAD3 Y01 sing 508 n n CAT HAT1 Y01 sing 509 n n CAT HAT2 Y01 sing 510 n n CAR HAR1 Y01 sing 511 n n CAR HAR2 Y01 sing 512 n n CAM HAM1 Y01 sing 513 n n CAM HAM2 Y01 sing 514 n n CAL HAL1 Y01 sing 515 n n CAL HAL2 Y01 sing 516 n n OAH HAH Y01 sing 517 n n # _atom_sites.entry_id 6WJC _atom_sites.fract_transf_matrix[1][1] 0.008187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACM A 1 501 462 ACM ACM . D 4 Y01 A 1 502 1001 Y01 Y01 . E 4 Y01 A 1 503 1002 Y01 Y01 . F 4 Y01 A 1 504 1003 Y01 Y01 . G 4 Y01 A 1 505 1004 Y01 Y01 . H 5 OIN A 1 506 1101 OIN OIN . I 6 HOH A 1 601 7 HOH HOH . I 6 HOH A 2 602 3 HOH HOH . I 6 HOH A 3 603 4 HOH HOH . I 6 HOH A 4 604 1 HOH HOH . I 6 HOH A 5 605 2 HOH HOH . I 6 HOH A 6 606 5 HOH HOH . J 6 HOH C 1 101 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . F 4 23.248 29.554 -9.723 1 125.78 ? CAA Y01 504 A 1 HETATM 2 C CBA Y01 . . . F 4 24.099 29.03 -8.57 1 129.05 ? CBA Y01 504 A 1 HETATM 3 C CAB Y01 . . . F 4 24.726 27.685 -8.982 1 120.73 ? CAB Y01 504 A 1 HETATM 4 C CAN Y01 . . . F 4 25.223 30.051 -8.272 1 119.39 ? CAN Y01 504 A 1 HETATM 5 C CAJ Y01 . . . F 4 24.634 31.373 -7.689 1 90.86 ? CAJ Y01 504 A 1 HETATM 6 C CAO Y01 . . . F 4 25.84 32.337 -7.464 1 99.4 ? CAO Y01 504 A 1 HETATM 7 C CBB Y01 . . . F 4 25.482 33.596 -6.654 1 107.45 ? CBB Y01 504 A 1 HETATM 8 C CAC Y01 . . . F 4 24.898 33.189 -5.329 1 103.26 ? CAC Y01 504 A 1 HETATM 9 C CBE Y01 . . . F 4 26.817 34.392 -6.455 1 115.46 ? CBE Y01 504 A 1 HETATM 10 C CAP Y01 . . . F 4 27.65 34.233 -7.729 1 129.07 ? CAP Y01 504 A 1 HETATM 11 C CAQ Y01 . . . F 4 28.01 35.706 -8.263 1 137.34 ? CAQ Y01 504 A 1 HETATM 12 C CBG Y01 . . . F 4 27.899 36.433 -6.919 1 135.85 ? CBG Y01 504 A 1 HETATM 13 C CBI Y01 . . . F 4 26.648 35.862 -6.254 1 116.88 ? CBI Y01 504 A 1 HETATM 14 C CAE Y01 . . . F 4 25.375 36.381 -6.957 1 124.57 ? CAE Y01 504 A 1 HETATM 15 C CAU Y01 . . . F 4 26.69 36.371 -4.785 1 108.73 ? CAU Y01 504 A 1 HETATM 16 C CAS Y01 . . . F 4 26.918 37.872 -4.699 1 115.67 ? CAS Y01 504 A 1 HETATM 17 C CBF Y01 . . . F 4 27.97 38.455 -5.582 1 138.39 ? CBF Y01 504 A 1 HETATM 18 C CBD Y01 . . . F 4 27.789 37.961 -7.007 1 149.91 ? CBD Y01 504 A 1 HETATM 19 C CAK Y01 . . . F 4 28.918 38.463 -7.883 1 167.08 ? CAK Y01 504 A 1 HETATM 20 C CAI Y01 . . . F 4 29.216 39.945 -7.663 1 174.12 ? CAI Y01 504 A 1 HETATM 21 C CAZ Y01 . . . F 4 28.559 40.66 -6.757 1 170.35 ? CAZ Y01 504 A 1 HETATM 22 C CAV Y01 . . . F 4 28.727 42.159 -6.779 1 171.08 ? CAV Y01 504 A 1 HETATM 23 C CBH Y01 . . . F 4 27.916 40.028 -5.547 1 154.05 ? CBH Y01 504 A 1 HETATM 24 C CAD Y01 . . . F 4 26.462 40.487 -5.465 1 158.32 ? CAD Y01 504 A 1 HETATM 25 C CAT Y01 . . . F 4 28.676 40.538 -4.33 1 148.37 ? CAT Y01 504 A 1 HETATM 26 C CAR Y01 . . . F 4 28.798 42.1 -4.268 1 153.57 ? CAR Y01 504 A 1 HETATM 27 C CBC Y01 . . . F 4 29.391 42.724 -5.541 1 170.2 ? CBC Y01 504 A 1 HETATM 28 O OAW Y01 . . . F 4 29.152 44.115 -5.513 1 188.47 ? OAW Y01 504 A 1 HETATM 29 C CAY Y01 . . . F 4 30.264 44.918 -5.123 1 202.79 ? CAY Y01 504 A 1 HETATM 30 O OAG Y01 . . . F 4 31.378 44.496 -5.229 1 204.97 ? OAG Y01 504 A 1 HETATM 31 C CAM Y01 . . . F 4 30.021 46.338 -4.561 1 206.9 ? CAM Y01 504 A 1 HETATM 32 C CAL Y01 . . . F 4 30.731 47.379 -5.445 1 204.69 ? CAL Y01 504 A 1 HETATM 33 C CAX Y01 . . . F 4 30.089 47.415 -6.84 1 201.86 ? CAX Y01 504 A 1 HETATM 34 O OAH Y01 . . . F 4 30.824 47.439 -7.869 1 200.15 ? OAH Y01 504 A 1 HETATM 35 O OAF Y01 . . . F 4 28.838 47.425 -6.959 1 198.59 ? OAF Y01 504 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #