data_6WK8
#
_model_server_result.job_id            bqerONeoyYx5YKppvtyjKg 
_model_server_result.datetime_utc      '2024-10-16 12:17:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    6WK8 
#
_exptl.entry_id    6WK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.369 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Dodecyldimethylphosphine oxide' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.18 
_cell.angle_gamma         90 
_cell.entry_id            6WK8 
_cell.length_a            141.819 
_cell.length_b            50.507 
_cell.length_c            108.575 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H31 O P' 
_chem_comp.formula_weight    246.369 
_chem_comp.id                9PD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Dodecyldimethylphosphine oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     APO-12 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 P13 9PD sing 1 n n 
C03 C02 9PD sing 2 n n 
C03 C04 9PD sing 3 n n 
C02 C01 9PD sing 4 n n 
C12 P13 9PD sing 5 n n 
C12 C11 9PD sing 6 n n 
P13 O16 9PD doub 7 n n 
P13 C15 9PD sing 8 n n 
C04 C05 9PD sing 9 n n 
C05 C06 9PD sing 10 n n 
C11 C10 9PD sing 11 n n 
C09 C10 9PD sing 12 n n 
C09 C08 9PD sing 13 n n 
C06 C07 9PD sing 14 n n 
C07 C08 9PD sing 15 n n 
C01 H1 9PD sing 16 n n 
C01 H2 9PD sing 17 n n 
C01 H3 9PD sing 18 n n 
C02 H4 9PD sing 19 n n 
C02 H5 9PD sing 20 n n 
C03 H6 9PD sing 21 n n 
C03 H7 9PD sing 22 n n 
C04 H8 9PD sing 23 n n 
C04 H9 9PD sing 24 n n 
C05 H10 9PD sing 25 n n 
C05 H11 9PD sing 26 n n 
C06 H12 9PD sing 27 n n 
C06 H13 9PD sing 28 n n 
C07 H14 9PD sing 29 n n 
C07 H15 9PD sing 30 n n 
C08 H16 9PD sing 31 n n 
C08 H17 9PD sing 32 n n 
C09 H18 9PD sing 33 n n 
C09 H19 9PD sing 34 n n 
C10 H20 9PD sing 35 n n 
C10 H21 9PD sing 36 n n 
C11 H22 9PD sing 37 n n 
C11 H23 9PD sing 38 n n 
C12 H24 9PD sing 39 n n 
C12 H25 9PD sing 40 n n 
C14 H26 9PD sing 41 n n 
C14 H27 9PD sing 42 n n 
C14 H28 9PD sing 43 n n 
C15 H29 9PD sing 44 n n 
C15 H30 9PD sing 45 n n 
C15 H31 9PD sing 46 n n 
#
_atom_sites.entry_id                     6WK8 
_atom_sites.fract_transf_matrix[1][1]    0.007051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000268 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019799 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009217 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PL0 B 1 201 201 PL0 PL0 . 
F 4 9PD B 1 202 301 9PD 9PD . 
G 5 DMU A 1 201 1 DMU DMU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 9PD . . . F 4 -13.814 -27.199 -23.101 1 33.41 ? C01 9PD 202 B 1 
HETATM 2 C C02 9PD . . . F 4 -14.364 -28.08 -24.25 1 35.38 ? C02 9PD 202 B 1 
HETATM 3 C C03 9PD . . . F 4 -13.765 -29.495 -24.395 1 35.32 ? C03 9PD 202 B 1 
HETATM 4 C C04 9PD . . . F 4 -14.506 -30.448 -23.451 1 38.16 ? C04 9PD 202 B 1 
HETATM 5 C C05 9PD . . . F 4 -13.975 -31.882 -23.389 1 39.55 ? C05 9PD 202 B 1 
HETATM 6 C C06 9PD . . . F 4 -13.988 -32.491 -21.974 1 43.33 ? C06 9PD 202 B 1 
HETATM 7 C C07 9PD . . . F 4 -12.705 -33.318 -21.746 1 45.87 ? C07 9PD 202 B 1 
HETATM 8 C C08 9PD . . . F 4 -12.922 -34.81 -21.463 1 46.14 ? C08 9PD 202 B 1 
HETATM 9 C C09 9PD . . . F 4 -13.112 -35.689 -22.707 1 41.77 ? C09 9PD 202 B 1 
HETATM 10 C C10 9PD . . . F 4 -13.491 -37.08 -22.209 1 40.29 ? C10 9PD 202 B 1 
HETATM 11 C C11 9PD . . . F 4 -14.595 -37.738 -23.041 1 40.34 ? C11 9PD 202 B 1 
HETATM 12 C C12 9PD . . . F 4 -14.01 -38.622 -24.16 1 41.77 ? C12 9PD 202 B 1 
HETATM 13 P P13 9PD . . . F 4 -12.98 -40.08 -23.49 1 44.4 ? P13 9PD 202 B 1 
HETATM 14 C C14 9PD . . . F 4 -12.515 -41.232 -24.931 1 41.83 ? C14 9PD 202 B 1 
HETATM 15 C C15 9PD . . . F 4 -14.043 -40.935 -22.168 1 42.42 ? C15 9PD 202 B 1 
HETATM 16 O O16 9PD . . . F 4 -11.724 -39.589 -22.769 1 45.49 ? O16 9PD 202 B 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#