data_6WKH
#
_model_server_result.job_id            NOOEyJTBB4ta67qOPZGPlg 
_model_server_result.datetime_utc      '2024-11-07 10:46:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6WKH 
#
_exptl.entry_id    6WKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.307 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6WKH 
_cell.length_a            185.019 
_cell.length_b            185.019 
_cell.length_c            56.93 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H26 F2 O7 P2' 
_chem_comp.formula_weight    418.307 
_chem_comp.id                FDF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2A PA FDF doub 83 n n 
O3A PA FDF sing 84 n n 
PA O1A FDF sing 85 n n 
PA O1 FDF sing 86 n n 
O2B PB FDF doub 87 n n 
O1B PB FDF sing 88 n n 
O3B PB FDF sing 89 n n 
PB O3A FDF sing 90 n n 
C1 O1 FDF sing 91 n n 
C1 C2 FDF sing 92 n n 
C1 H1 FDF sing 93 e n 
C1 H1A FDF sing 94 n n 
O1A HO1A FDF sing 95 n n 
O1B HO1B FDF sing 96 n n 
C2 C3 FDF doub 97 n n 
C2 H2 FDF sing 98 n n 
C3 C4 FDF sing 99 n n 
C3 C5 FDF sing 100 n n 
O3B HO3B FDF sing 101 n n 
C4 H4 FDF sing 102 n n 
C4 H4A FDF sing 103 n n 
C4 H4B FDF sing 104 n n 
C6 C5 FDF sing 105 n n 
C5 H5 FDF sing 106 n n 
C5 H5A FDF sing 107 n n 
C7 C6 FDF sing 108 n n 
C6 H6 FDF sing 109 n n 
C6 H6A FDF sing 110 n n 
C8 C7 FDF doub 111 n n 
C7 H7 FDF sing 112 e n 
C9 C8 FDF sing 113 n n 
C8 C10 FDF sing 114 n n 
C11 C9 FDF sing 115 n n 
C9 H9 FDF sing 116 n n 
C9 H9A FDF sing 117 n n 
C10 H10 FDF sing 118 n n 
C10 H10A FDF sing 119 n n 
C10 H10B FDF sing 120 n n 
C11 C12 FDF sing 121 n n 
C11 H11 FDF sing 122 n n 
C11 H11A FDF sing 123 n n 
C13 C12 FDF doub 124 n n 
C12 H12 FDF sing 125 n n 
C15 C13 FDF sing 126 n n 
C13 C14 FDF sing 127 n n 
F2 C14 FDF sing 128 n n 
C14 H14 FDF sing 129 n n 
C14 H14A FDF sing 130 n n 
C15 F1 FDF sing 131 n n 
C15 H15 FDF sing 132 n n 
C15 H15A FDF sing 133 n n 
#
_atom_sites.entry_id                     6WKH 
_atom_sites.fract_transf_matrix[1][1]    0.005405 
_atom_sites.fract_transf_matrix[1][2]    0.00312 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FDF A 1 401 401 FDF DFF . 
D 3 HOH A 1 501 23 HOH HOH . 
D 3 HOH A 2 502 42 HOH HOH . 
D 3 HOH A 3 503 67 HOH HOH . 
D 3 HOH A 4 504 6 HOH HOH . 
D 3 HOH A 5 505 40 HOH HOH . 
D 3 HOH A 6 506 36 HOH HOH . 
D 3 HOH A 7 507 12 HOH HOH . 
D 3 HOH A 8 508 7 HOH HOH . 
D 3 HOH A 9 509 27 HOH HOH . 
D 3 HOH A 10 510 72 HOH HOH . 
D 3 HOH A 11 511 44 HOH HOH . 
D 3 HOH A 12 512 1 HOH HOH . 
D 3 HOH A 13 513 55 HOH HOH . 
D 3 HOH A 14 514 13 HOH HOH . 
D 3 HOH A 15 515 15 HOH HOH . 
D 3 HOH A 16 516 81 HOH HOH . 
D 3 HOH A 17 517 5 HOH HOH . 
D 3 HOH A 18 518 19 HOH HOH . 
D 3 HOH A 19 519 38 HOH HOH . 
D 3 HOH A 20 520 22 HOH HOH . 
D 3 HOH A 21 521 74 HOH HOH . 
D 3 HOH A 22 522 80 HOH HOH . 
D 3 HOH A 23 523 4 HOH HOH . 
D 3 HOH A 24 524 11 HOH HOH . 
D 3 HOH A 25 525 46 HOH HOH . 
D 3 HOH A 26 526 31 HOH HOH . 
D 3 HOH A 27 527 53 HOH HOH . 
D 3 HOH A 28 528 65 HOH HOH . 
D 3 HOH A 29 529 30 HOH HOH . 
D 3 HOH A 30 530 8 HOH HOH . 
D 3 HOH A 31 531 3 HOH HOH . 
D 3 HOH A 32 532 56 HOH HOH . 
D 3 HOH A 33 533 70 HOH HOH . 
D 3 HOH A 34 534 9 HOH HOH . 
D 3 HOH A 35 535 34 HOH HOH . 
D 3 HOH A 36 536 18 HOH HOH . 
D 3 HOH A 37 537 28 HOH HOH . 
D 3 HOH A 38 538 54 HOH HOH . 
D 3 HOH A 39 539 26 HOH HOH . 
D 3 HOH A 40 540 32 HOH HOH . 
D 3 HOH A 41 541 73 HOH HOH . 
D 3 HOH A 42 542 66 HOH HOH . 
D 3 HOH A 43 543 47 HOH HOH . 
D 3 HOH A 44 544 24 HOH HOH . 
D 3 HOH A 45 545 21 HOH HOH . 
D 3 HOH A 46 546 17 HOH HOH . 
D 3 HOH A 47 547 10 HOH HOH . 
D 3 HOH A 48 548 83 HOH HOH . 
D 3 HOH A 49 549 58 HOH HOH . 
D 3 HOH A 50 550 37 HOH HOH . 
D 3 HOH A 51 551 69 HOH HOH . 
D 3 HOH A 52 552 64 HOH HOH . 
D 3 HOH A 53 553 2 HOH HOH . 
D 3 HOH A 54 554 16 HOH HOH . 
D 3 HOH A 55 555 71 HOH HOH . 
D 3 HOH A 56 556 43 HOH HOH . 
D 3 HOH A 57 557 45 HOH HOH . 
D 3 HOH A 58 558 50 HOH HOH . 
D 3 HOH A 59 559 79 HOH HOH . 
D 3 HOH A 60 560 49 HOH HOH . 
D 3 HOH A 61 561 82 HOH HOH . 
D 3 HOH A 62 562 86 HOH HOH . 
D 3 HOH A 63 563 62 HOH HOH . 
D 3 HOH A 64 564 76 HOH HOH . 
D 3 HOH A 65 565 84 HOH HOH . 
D 3 HOH A 66 566 57 HOH HOH . 
D 3 HOH A 67 567 48 HOH HOH . 
D 3 HOH A 68 568 61 HOH HOH . 
D 3 HOH A 69 569 39 HOH HOH . 
D 3 HOH A 70 570 75 HOH HOH . 
D 3 HOH A 71 571 41 HOH HOH . 
D 3 HOH A 72 572 59 HOH HOH . 
D 3 HOH A 73 573 51 HOH HOH . 
D 3 HOH A 74 574 60 HOH HOH . 
D 3 HOH A 75 575 63 HOH HOH . 
D 3 HOH A 76 576 52 HOH HOH . 
E 3 HOH B 1 401 90 HOH HOH . 
E 3 HOH B 2 402 33 HOH HOH . 
E 3 HOH B 3 403 96 HOH HOH . 
E 3 HOH B 4 404 94 HOH HOH . 
E 3 HOH B 5 405 29 HOH HOH . 
E 3 HOH B 6 406 92 HOH HOH . 
E 3 HOH B 7 407 20 HOH HOH . 
E 3 HOH B 8 408 102 HOH HOH . 
E 3 HOH B 9 409 99 HOH HOH . 
E 3 HOH B 10 410 97 HOH HOH . 
E 3 HOH B 11 411 14 HOH HOH . 
E 3 HOH B 12 412 25 HOH HOH . 
E 3 HOH B 13 413 35 HOH HOH . 
E 3 HOH B 14 414 89 HOH HOH . 
E 3 HOH B 15 415 95 HOH HOH . 
E 3 HOH B 16 416 87 HOH HOH . 
E 3 HOH B 17 417 101 HOH HOH . 
E 3 HOH B 18 418 91 HOH HOH . 
E 3 HOH B 19 419 100 HOH HOH . 
E 3 HOH B 20 420 103 HOH HOH . 
E 3 HOH B 21 421 98 HOH HOH . 
E 3 HOH B 22 422 104 HOH HOH . 
E 3 HOH B 23 423 77 HOH HOH . 
E 3 HOH B 24 424 85 HOH HOH . 
E 3 HOH B 25 425 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FDF . . . C 2 52.283 -61.98 20.754 1 143.3 ? PA FDF 401 A 1 
HETATM 2 P PB FDF . . . C 2 50.241 -63.358 22.163 1 152.81 ? PB FDF 401 A 1 
HETATM 3 C C1 FDF . . . C 2 51.97 -63.602 18.738 1 121.18 ? C1 FDF 401 A 1 
HETATM 4 O O1 FDF . . . C 2 51.97 -62.251 19.194 1 125.6 ? O1 FDF 401 A 1 
HETATM 5 O O1A FDF . . . C 2 52.93 -60.62 20.883 1 126.99 ? O1A FDF 401 A 1 
HETATM 6 O O1B FDF . . . C 2 51.282 -64.158 22.908 1 129.19 ? O1B FDF 401 A 1 
HETATM 7 C C2 FDF . . . C 2 51.529 -63.742 17.291 1 113.22 ? C2 FDF 401 A 1 
HETATM 8 O O2A FDF . . . C 2 53.228 -63.044 21.261 1 122.09 ? O2A FDF 401 A 1 
HETATM 9 O O2B FDF . . . C 2 49.713 -64.18 21.01 1 129.66 ? O2B FDF 401 A 1 
HETATM 10 C C3 FDF . . . C 2 50.548 -64.593 16.895 1 111.17 ? C3 FDF 401 A 1 
HETATM 11 O O3A FDF . . . C 2 50.91 -61.997 21.604 1 143.63 ? O3A FDF 401 A 1 
HETATM 12 O O3B FDF . . . C 2 49.107 -63.002 23.095 1 149.74 ? O3B FDF 401 A 1 
HETATM 13 C C4 FDF . . . C 2 49.84 -65.456 17.929 1 98.93 ? C4 FDF 401 A 1 
HETATM 14 C C5 FDF . . . C 2 50.233 -64.607 15.397 1 105.47 ? C5 FDF 401 A 1 
HETATM 15 C C6 FDF . . . C 2 50.255 -66 14.769 1 87.53 ? C6 FDF 401 A 1 
HETATM 16 C C7 FDF . . . C 2 51.488 -66.814 15.118 1 103.4 ? C7 FDF 401 A 1 
HETATM 17 C C8 FDF . . . C 2 52.627 -66.814 14.377 1 92.86 ? C8 FDF 401 A 1 
HETATM 18 C C9 FDF . . . C 2 53.755 -67.697 14.897 1 81.91 ? C9 FDF 401 A 1 
HETATM 19 C C10 FDF . . . C 2 52.733 -65.968 13.116 1 69.32 ? C10 FDF 401 A 1 
HETATM 20 C C11 FDF . . . C 2 54.699 -67.005 15.877 1 73.7 ? C11 FDF 401 A 1 
HETATM 21 C C12 FDF . . . C 2 54.306 -67.254 17.315 1 86.39 ? C12 FDF 401 A 1 
HETATM 22 C C13 FDF . . . C 2 54.487 -66.324 18.276 1 88.86 ? C13 FDF 401 A 1 
HETATM 23 C C14 FDF . . . C 2 54.088 -66.601 19.719 1 78 ? C14 FDF 401 A 1 
HETATM 24 C C15 FDF . . . C 2 55.1 -65.006 17.838 1 89.05 ? C15 FDF 401 A 1 
HETATM 25 F F1 FDF . . . C 2 55.25 -64.113 18.868 1 104.94 ? F1 FDF 401 A 1 
HETATM 26 F F2 FDF . . . C 2 54.434 -65.588 20.573 1 82.68 ? F2 FDF 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#