data_6WKV
#
_model_server_result.job_id            TDRCvyVvpdnqIvbAbPRqVg 
_model_server_result.datetime_utc      '2024-10-10 23:36:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"ND","auth_seq_id":301}' 
#
_entry.id    6WKV 
#
_exptl.entry_id    6WKV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    60 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WKV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    60-meric 
_pdbx_struct_assembly.oligomeric_count      60 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 IB N N 
? 2 JB N N 
? 2 KB N N 
? 2 LB N N 
? 2 MB N N 
? 2 NB N N 
? 2 OB N N 
? 2 PB N N 
? 2 QB N N 
? 2 RB N N 
? 2 SB N N 
? 2 TB N N 
? 2 UB N N 
? 2 VB N N 
? 2 WB N N 
? 2 XB N N 
? 2 YB N N 
? 2 ZB N N 
? 2 AC N N 
? 2 BC N N 
? 2 CC N N 
? 2 DC N N 
? 2 EC N N 
? 2 FC N N 
? 2 GC N N 
? 2 HC N N 
? 2 IC N N 
? 2 JC N N 
? 2 KC N N 
? 2 LC N N 
? 2 MC N N 
? 2 NC N N 
? 2 OC N N 
? 2 PC N N 
? 2 QC N N 
? 2 RC N N 
? 2 SC N N 
? 2 TC N N 
? 2 UC N N 
? 2 VC N N 
? 2 WC N N 
? 2 XC N N 
? 2 YC N N 
? 2 ZC N N 
? 2 AD N N 
? 2 BD N N 
? 2 CD N N 
? 2 DD N N 
? 2 ED N N 
? 2 FD N N 
? 2 GD N N 
? 2 HD N N 
? 2 ID N N 
? 2 JD N N 
? 2 KD N N 
? 2 LD N N 
? 2 MD N N 
? 2 ND N N 
? 2 OD N N 
? 2 PD N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     6WKV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IB 2 FMN A 1 301 1 FMN LIG . 
JB 2 FMN B 1 301 60 FMN LIG . 
KB 2 FMN C 1 301 58 FMN LIG . 
LB 2 FMN D 1 301 54 FMN LIG . 
MB 2 FMN D 1 302 59 FMN LIG . 
NB 2 FMN E 1 301 57 FMN LIG . 
OB 2 FMN F 1 301 56 FMN LIG . 
PB 2 FMN G 1 301 40 FMN LIG . 
QB 2 FMN G 1 302 55 FMN LIG . 
RB 2 FMN I 1 301 53 FMN LIG . 
SB 2 FMN J 1 301 52 FMN LIG . 
TB 2 FMN M 1 301 36 FMN LIG . 
UB 2 FMN M 1 302 49 FMN LIG . 
VB 2 FMN N 1 301 48 FMN LIG . 
WB 2 FMN O 1 301 47 FMN LIG . 
XB 2 FMN P 1 301 46 FMN LIG . 
YB 2 FMN Q 1 301 45 FMN LIG . 
ZB 2 FMN R 1 301 44 FMN LIG . 
AC 2 FMN S 1 301 43 FMN LIG . 
BC 2 FMN T 1 301 42 FMN LIG . 
CC 2 FMN V 1 301 11 FMN LIG . 
DC 2 FMN W 1 301 39 FMN LIG . 
EC 2 FMN X 1 301 38 FMN LIG . 
FC 2 FMN Y 1 301 37 FMN LIG . 
GC 2 FMN 0 1 301 35 FMN LIG . 
HC 2 FMN 0 1 302 50 FMN LIG . 
IC 2 FMN 1 1 301 27 FMN LIG . 
JC 2 FMN 1 1 302 34 FMN LIG . 
KC 2 FMN 2 1 301 33 FMN LIG . 
LC 2 FMN 3 1 301 32 FMN LIG . 
MC 2 FMN 4 1 301 31 FMN LIG . 
NC 2 FMN 5 1 301 30 FMN LIG . 
OC 2 FMN 5 1 302 51 FMN LIG . 
PC 2 FMN 6 1 301 29 FMN LIG . 
QC 2 FMN 7 1 301 24 FMN LIG . 
RC 2 FMN 7 1 302 28 FMN LIG . 
SC 2 FMN a 1 301 25 FMN LIG . 
TC 2 FMN a 1 302 26 FMN LIG . 
UC 2 FMN c 1 301 23 FMN LIG . 
VC 2 FMN d 1 301 22 FMN LIG . 
WC 2 FMN e 1 301 21 FMN LIG . 
XC 2 FMN f 1 301 20 FMN LIG . 
YC 2 FMN h 1 301 14 FMN LIG . 
ZC 2 FMN h 1 302 18 FMN LIG . 
AD 2 FMN i 1 301 17 FMN LIG . 
BD 2 FMN j 1 301 16 FMN LIG . 
CD 2 FMN k 1 301 15 FMN LIG . 
DD 2 FMN m 1 301 13 FMN LIG . 
ED 2 FMN m 1 302 19 FMN LIG . 
FD 2 FMN n 1 301 12 FMN LIG . 
GD 2 FMN p 1 301 10 FMN LIG . 
HD 2 FMN p 1 302 41 FMN LIG . 
ID 2 FMN q 1 301 9 FMN LIG . 
JD 2 FMN r 1 301 4 FMN LIG . 
KD 2 FMN r 1 302 8 FMN LIG . 
LD 2 FMN s 1 301 7 FMN LIG . 
MD 2 FMN t 1 301 6 FMN LIG . 
ND 2 FMN u 1 301 5 FMN LIG . 
OD 2 FMN w 1 301 3 FMN LIG . 
PD 2 FMN x 1 301 2 FMN LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . ND 2 237.577 258.11 120.33 1 32.47 ? N1 FMN 301 u 1 
HETATM 2 C C2 FMN . . . ND 2 237.57 258.357 121.702 1 32.47 ? C2 FMN 301 u 1 
HETATM 3 O O2 FMN . . . ND 2 237.215 259.47 122.112 1 32.47 ? O2 FMN 301 u 1 
HETATM 4 N N3 FMN . . . ND 2 237.95 257.384 122.624 1 32.47 ? N3 FMN 301 u 1 
HETATM 5 C C4 FMN . . . ND 2 238.36 256.117 122.192 1 32.47 ? C4 FMN 301 u 1 
HETATM 6 O O4 FMN . . . ND 2 238.705 255.234 122.994 1 32.47 ? O4 FMN 301 u 1 
HETATM 7 C C4A FMN . . . ND 2 238.38 255.821 120.746 1 32.47 ? C4A FMN 301 u 1 
HETATM 8 N N5 FMN . . . ND 2 238.782 254.552 120.284 1 32.47 ? N5 FMN 301 u 1 
HETATM 9 C C5A FMN . . . ND 2 238.788 254.298 118.894 1 32.47 ? C5A FMN 301 u 1 
HETATM 10 C C6 FMN . . . ND 2 239.211 252.969 118.421 1 32.47 ? C6 FMN 301 u 1 
HETATM 11 C C7 FMN . . . ND 2 239.231 252.671 116.99 1 32.47 ? C7 FMN 301 u 1 
HETATM 12 C C7M FMN . . . ND 2 239.697 251.167 116.456 1 32.47 ? C7M FMN 301 u 1 
HETATM 13 C C8 FMN . . . ND 2 238.821 253.703 116.025 1 32.47 ? C8 FMN 301 u 1 
HETATM 14 C C8M FMN . . . ND 2 238.832 253.401 114.462 1 32.47 ? C8M FMN 301 u 1 
HETATM 15 C C9 FMN . . . ND 2 238.411 255.004 116.492 1 32.47 ? C9 FMN 301 u 1 
HETATM 16 C C9A FMN . . . ND 2 238.388 255.318 117.952 1 32.47 ? C9A FMN 301 u 1 
HETATM 17 N N10 FMN . . . ND 2 237.985 256.598 118.42 1 32.47 ? N10 FMN 301 u 1 
HETATM 18 C C10 FMN . . . ND 2 237.979 256.849 119.816 1 32.47 ? C10 FMN 301 u 1 
HETATM 19 C C1' FMN . . . ND 2 237.524 257.736 117.444 1 32.47 ? C1' FMN 301 u 1 
HETATM 20 C C2' FMN . . . ND 2 238.54 258.985 117.427 1 32.47 ? C2' FMN 301 u 1 
HETATM 21 O O2' FMN . . . ND 2 238.261 259.922 118.515 1 32.47 ? O2' FMN 301 u 1 
HETATM 22 C C3' FMN . . . ND 2 238.395 259.717 116.01 1 32.47 ? C3' FMN 301 u 1 
HETATM 23 O O3' FMN . . . ND 2 239.609 260.469 115.713 1 32.47 ? O3' FMN 301 u 1 
HETATM 24 C C4' FMN . . . ND 2 237.123 260.731 116.047 1 32.47 ? C4' FMN 301 u 1 
HETATM 25 O O4' FMN . . . ND 2 236.062 260.178 116.887 1 32.47 ? O4' FMN 301 u 1 
HETATM 26 C C5' FMN . . . ND 2 236.591 260.912 114.559 1 32.47 ? C5' FMN 301 u 1 
HETATM 27 O O5' FMN . . . ND 2 235.42 260.053 114.381 1 32.47 ? O5' FMN 301 u 1 
HETATM 28 P P FMN . . . ND 2 234.337 260.408 113.065 1 32.47 ? P FMN 301 u 1 
HETATM 29 O O1P FMN . . . ND 2 232.986 259.603 113.276 1 32.47 ? O1P FMN 301 u 1 
HETATM 30 O O2P FMN . . . ND 2 235.01 259.98 111.692 1 32.47 ? O2P FMN 301 u 1 
HETATM 31 O O3P FMN . . . ND 2 234.041 261.966 113.03 1 32.47 ? O3P FMN 301 u 1 
HETATM 32 H HN3 FMN . . . ND 2 237.935 257.569 123.467 1 32.47 ? HN3 FMN 301 u 1 
HETATM 33 H H6 FMN . . . ND 2 239.464 252.324 119.033 1 32.47 ? H6 FMN 301 u 1 
HETATM 34 H HM71 FMN . . . ND 2 240.597 251.175 116.216 1 32.47 ? HM71 FMN 301 u 1 
HETATM 35 H HM72 FMN . . . ND 2 239.182 250.944 115.712 1 32.47 ? HM72 FMN 301 u 1 
HETATM 36 H HM73 FMN . . . ND 2 239.549 250.539 117.13 1 32.47 ? HM73 FMN 301 u 1 
HETATM 37 H HM81 FMN . . . ND 2 239.313 252.582 114.297 1 32.47 ? HM81 FMN 301 u 1 
HETATM 38 H HM82 FMN . . . ND 2 239.261 254.133 114.004 1 32.47 ? HM82 FMN 301 u 1 
HETATM 39 H HM83 FMN . . . ND 2 237.928 253.314 114.137 1 32.47 ? HM83 FMN 301 u 1 
HETATM 40 H H9 FMN . . . ND 2 238.156 255.646 115.882 1 32.47 ? H9 FMN 301 u 1 
HETATM 41 H "H1'1" FMN . . . ND 2 236.684 258.04 117.714 1 32.47 ? "H1'1" FMN 301 u 1 
HETATM 42 H "H1'2" FMN . . . ND 2 237.45 257.404 116.576 1 32.47 ? "H1'2" FMN 301 u 1 
HETATM 43 H H2' FMN . . . ND 2 239.402 258.658 117.519 1 32.47 ? H2' FMN 301 u 1 
HETATM 44 H HO2' FMN . . . ND 2 238.961 260.326 118.724 1 32.47 ? HO2' FMN 301 u 1 
HETATM 45 H H3' FMN . . . ND 2 238.255 259.07 115.343 1 32.47 ? H3' FMN 301 u 1 
HETATM 46 H HO3' FMN . . . ND 2 239.568 261.221 116.067 1 32.47 ? HO3' FMN 301 u 1 
HETATM 47 H H4' FMN . . . ND 2 237.391 261.564 116.387 1 32.47 ? H4' FMN 301 u 1 
HETATM 48 H HO4' FMN . . . ND 2 236.312 260.173 117.681 1 32.47 ? HO4' FMN 301 u 1 
HETATM 49 H "H5'1" FMN . . . ND 2 237.259 260.661 113.951 1 32.47 ? "H5'1" FMN 301 u 1 
HETATM 50 H "H5'2" FMN . . . ND 2 236.35 261.806 114.416 1 32.47 ? "H5'2" FMN 301 u 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    112 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           50 
#