data_6WKW # _model_server_result.job_id 5aW9EoL7Pg9vJed3dq3wmg _model_server_result.datetime_utc '2024-12-23 01:47:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6WKW # _exptl.entry_id 6WKW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WKW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 6WKW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD D 1 401 401 NAD NAD . F 2 NAD C 1 401 401 NAD NAD . G 2 NAD B 1 401 401 NAD NAD . H 2 NAD A 1 401 401 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 90.104 120.744 110.324 1 36.39 ? PA NAD 401 D 1 HETATM 2 O O1A NAD . . . E 2 88.622 120.759 110.508 1 36.39 ? O1A NAD 401 D 1 HETATM 3 O O2A NAD . . . E 2 90.486 119.618 109.442 1 36.39 ? O2A NAD 401 D 1 HETATM 4 O O5B NAD . . . E 2 90.828 120.588 111.743 1 36.39 ? O5B NAD 401 D 1 HETATM 5 C C5B NAD . . . E 2 90.08 120.95 112.886 1 36.39 ? C5B NAD 401 D 1 HETATM 6 C C4B NAD . . . E 2 90.479 120.002 114.066 1 36.39 ? C4B NAD 401 D 1 HETATM 7 O O4B NAD . . . E 2 90.459 120.818 115.45 1 36.39 ? O4B NAD 401 D 1 HETATM 8 C C3B NAD . . . E 2 89.608 119.144 114.21 1 36.39 ? C3B NAD 401 D 1 HETATM 9 O O3B NAD . . . E 2 90.147 118.012 114.961 1 36.39 ? O3B NAD 401 D 1 HETATM 10 C C2B NAD . . . E 2 88.52 119.871 115.245 1 36.39 ? C2B NAD 401 D 1 HETATM 11 O O2B NAD . . . E 2 87.562 118.883 115.674 1 36.39 ? O2B NAD 401 D 1 HETATM 12 C C1B NAD . . . E 2 89.303 120.163 116.202 1 36.39 ? C1B NAD 401 D 1 HETATM 13 N N9A NAD . . . E 2 88.599 121.119 117.134 1 36.39 ? N9A NAD 401 D 1 HETATM 14 C C8A NAD . . . E 2 87.426 121.669 116.908 1 36.39 ? C8A NAD 401 D 1 HETATM 15 N N7A NAD . . . E 2 87.104 122.439 117.942 1 36.39 ? N7A NAD 401 D 1 HETATM 16 C C5A NAD . . . E 2 88.085 122.378 118.842 1 36.39 ? C5A NAD 401 D 1 HETATM 17 C C6A NAD . . . E 2 88.322 122.943 120.088 1 36.39 ? C6A NAD 401 D 1 HETATM 18 N N6A NAD . . . E 2 87.281 123.894 120.702 1 36.39 ? N6A NAD 401 D 1 HETATM 19 N N1A NAD . . . E 2 89.442 122.668 120.751 1 36.39 ? N1A NAD 401 D 1 HETATM 20 C C2A NAD . . . E 2 90.327 121.852 120.219 1 36.39 ? C2A NAD 401 D 1 HETATM 21 N N3A NAD . . . E 2 90.144 121.293 119.042 1 36.39 ? N3A NAD 401 D 1 HETATM 22 C C4A NAD . . . E 2 89.037 121.534 118.326 1 36.39 ? C4A NAD 401 D 1 HETATM 23 O O3 NAD . . . E 2 90.588 122.198 109.614 1 36.39 ? O3 NAD 401 D 1 HETATM 24 P PN NAD . . . E 2 92.22 122.556 109.424 1 36.39 ? PN NAD 401 D 1 HETATM 25 O O1N NAD . . . E 2 92.972 121.781 110.472 1 36.39 ? O1N NAD 401 D 1 HETATM 26 O O2N NAD . . . E 2 92.677 122.183 108.016 1 36.39 ? O2N NAD 401 D 1 HETATM 27 O O5D NAD . . . E 2 92.452 124.125 109.685 1 36.39 ? O5D NAD 401 D 1 HETATM 28 C C5D NAD . . . E 2 92.225 124.564 111.011 1 36.39 ? C5D NAD 401 D 1 HETATM 29 C C4D NAD . . . E 2 91.895 125.896 110.928 1 36.39 ? C4D NAD 401 D 1 HETATM 30 O O4D NAD . . . E 2 93.131 126.659 110.371 1 36.39 ? O4D NAD 401 D 1 HETATM 31 C C3D NAD . . . E 2 90.808 126.065 109.847 1 36.39 ? C3D NAD 401 D 1 HETATM 32 O O3D NAD . . . E 2 89.51 126.399 110.492 1 36.39 ? O3D NAD 401 D 1 HETATM 33 C C2D NAD . . . E 2 91.161 127.06 109.14 1 36.39 ? C2D NAD 401 D 1 HETATM 34 O O2D NAD . . . E 2 90.199 128.086 109.317 1 36.39 ? O2D NAD 401 D 1 HETATM 35 C C1D NAD . . . E 2 92.616 127.609 109.731 1 36.39 ? C1D NAD 401 D 1 HETATM 36 N N1N NAD . . . E 2 93.475 127.926 108.647 1 36.39 ? N1N NAD 401 D 1 HETATM 37 C C2N NAD . . . E 2 94.069 129.105 108.665 1 36.39 ? C2N NAD 401 D 1 HETATM 38 C C3N NAD . . . E 2 94.914 129.485 107.663 1 36.39 ? C3N NAD 401 D 1 HETATM 39 C C7N NAD . . . E 2 95.577 130.865 107.736 1 36.39 ? C7N NAD 401 D 1 HETATM 40 O O7N NAD . . . E 2 95.129 131.739 107.113 1 36.39 ? O7N NAD 401 D 1 HETATM 41 N N7N NAD . . . E 2 96.773 131.088 108.61 1 36.39 ? N7N NAD 401 D 1 HETATM 42 C C4N NAD . . . E 2 95.138 128.607 106.62 1 36.39 ? C4N NAD 401 D 1 HETATM 43 C C5N NAD . . . E 2 94.501 127.363 106.622 1 36.39 ? C5N NAD 401 D 1 HETATM 44 C C6N NAD . . . E 2 93.665 127.063 107.677 1 36.39 ? C6N NAD 401 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #