data_6WKZ # _model_server_result.job_id JhBxA26-CZrDCOfpsiz2fw _model_server_result.datetime_utc '2024-10-12 04:23:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6WKZ # _exptl.entry_id 6WKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.449 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(1R)-2-amino-1-phenylethyl]-3-(pyridin-3-yl)-5,6-dihydrothieno[2,3-c]pyridin-7(4H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WKZ _cell.length_a 106.232 _cell.length_b 106.232 _cell.length_c 157.471 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 52.490333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H19 N3 O S' _chem_comp.formula_weight 349.449 _chem_comp.id 8Y1 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(1R)-2-amino-1-phenylethyl]-3-(pyridin-3-yl)-5,6-dihydrothieno[2,3-c]pyridin-7(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 8Y1 doub 1 n y C23 C22 8Y1 sing 2 n y C24 C25 8Y1 sing 3 n y C22 C21 8Y1 doub 4 n y O14 C13 8Y1 doub 5 n n C25 C26 8Y1 doub 6 n y C21 C26 8Y1 sing 7 n y C21 C3 8Y1 sing 8 n n S11 C12 8Y1 sing 9 n y S11 C10 8Y1 sing 10 n y C3 N5 8Y1 sing 11 n n C3 C2 8Y1 sing 12 n n C13 N5 8Y1 sing 13 n n C13 C12 8Y1 sing 14 n n N5 C6 8Y1 sing 15 n n C12 C8 8Y1 doub 16 n y C2 N1 8Y1 sing 17 n n C10 C9 8Y1 doub 18 n y C6 C7 8Y1 sing 19 n n C8 C9 8Y1 sing 20 n y C8 C7 8Y1 sing 21 n n C9 C15 8Y1 sing 22 n n C16 C15 8Y1 doub 23 n y C16 C17 8Y1 sing 24 n y C15 C20 8Y1 sing 25 n y C17 C18 8Y1 doub 26 n y C20 N19 8Y1 doub 27 n y C18 N19 8Y1 sing 28 n y N1 H1 8Y1 sing 29 n n N1 H2 8Y1 sing 30 n n C6 H4 8Y1 sing 31 n n C6 H5 8Y1 sing 32 n n C7 H6 8Y1 sing 33 n n C7 H7 8Y1 sing 34 n n C10 H8 8Y1 sing 35 n n C17 H9 8Y1 sing 36 n n C20 H10 8Y1 sing 37 n n C22 H11 8Y1 sing 38 n n C24 H12 8Y1 sing 39 n n C26 H13 8Y1 sing 40 n n C2 H14 8Y1 sing 41 n n C2 H15 8Y1 sing 42 n n C3 H16 8Y1 sing 43 n n C16 H17 8Y1 sing 44 n n C18 H18 8Y1 sing 45 n n C23 H19 8Y1 sing 46 n n C25 H20 8Y1 sing 47 n n # _atom_sites.entry_id 6WKZ _atom_sites.fract_transf_matrix[1][1] 0.009413 _atom_sites.fract_transf_matrix[1][2] 0.005435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8Y1 A 1 701 701 8Y1 8Y1 . D 2 8Y1 B 1 701 701 8Y1 8Y1 . E 3 HOH A 1 801 801 HOH HOH . E 3 HOH A 2 802 802 HOH HOH . E 3 HOH A 3 803 803 HOH HOH . E 3 HOH A 4 804 804 HOH HOH . E 3 HOH A 5 805 805 HOH HOH . E 3 HOH A 6 806 806 HOH HOH . E 3 HOH A 7 807 807 HOH HOH . E 3 HOH A 8 808 808 HOH HOH . E 3 HOH A 9 809 809 HOH HOH . E 3 HOH A 10 810 810 HOH HOH . E 3 HOH A 11 811 811 HOH HOH . E 3 HOH A 12 812 812 HOH HOH . E 3 HOH A 13 813 813 HOH HOH . E 3 HOH A 14 814 814 HOH HOH . E 3 HOH A 15 815 815 HOH HOH . E 3 HOH A 16 816 816 HOH HOH . E 3 HOH A 17 817 817 HOH HOH . E 3 HOH A 18 818 818 HOH HOH . E 3 HOH A 19 819 819 HOH HOH . E 3 HOH A 20 820 820 HOH HOH . E 3 HOH A 21 821 821 HOH HOH . E 3 HOH A 22 822 822 HOH HOH . E 3 HOH A 23 823 823 HOH HOH . E 3 HOH A 24 824 824 HOH HOH . E 3 HOH A 25 825 825 HOH HOH . E 3 HOH A 26 826 826 HOH HOH . E 3 HOH A 27 827 827 HOH HOH . E 3 HOH A 28 828 828 HOH HOH . E 3 HOH A 29 829 829 HOH HOH . E 3 HOH A 30 830 830 HOH HOH . E 3 HOH A 31 831 831 HOH HOH . E 3 HOH A 32 832 832 HOH HOH . E 3 HOH A 33 833 833 HOH HOH . E 3 HOH A 34 834 834 HOH HOH . E 3 HOH A 35 835 835 HOH HOH . E 3 HOH A 36 836 836 HOH HOH . E 3 HOH A 37 837 837 HOH HOH . E 3 HOH A 38 838 838 HOH HOH . E 3 HOH A 39 839 839 HOH HOH . E 3 HOH A 40 840 840 HOH HOH . E 3 HOH A 41 841 841 HOH HOH . E 3 HOH A 42 842 842 HOH HOH . E 3 HOH A 43 843 843 HOH HOH . E 3 HOH A 44 844 844 HOH HOH . E 3 HOH A 45 845 845 HOH HOH . E 3 HOH A 46 846 846 HOH HOH . F 3 HOH B 1 801 801 HOH HOH . F 3 HOH B 2 802 802 HOH HOH . F 3 HOH B 3 803 803 HOH HOH . F 3 HOH B 4 804 804 HOH HOH . F 3 HOH B 5 805 805 HOH HOH . F 3 HOH B 6 806 806 HOH HOH . F 3 HOH B 7 807 807 HOH HOH . F 3 HOH B 8 808 808 HOH HOH . F 3 HOH B 9 809 809 HOH HOH . F 3 HOH B 10 810 810 HOH HOH . F 3 HOH B 11 811 811 HOH HOH . F 3 HOH B 12 812 812 HOH HOH . F 3 HOH B 13 813 813 HOH HOH . F 3 HOH B 14 814 814 HOH HOH . F 3 HOH B 15 815 815 HOH HOH . F 3 HOH B 16 816 816 HOH HOH . F 3 HOH B 17 817 817 HOH HOH . F 3 HOH B 18 818 818 HOH HOH . F 3 HOH B 19 819 819 HOH HOH . F 3 HOH B 20 820 820 HOH HOH . F 3 HOH B 21 821 821 HOH HOH . F 3 HOH B 22 822 822 HOH HOH . F 3 HOH B 23 823 823 HOH HOH . F 3 HOH B 24 824 824 HOH HOH . F 3 HOH B 25 825 825 HOH HOH . F 3 HOH B 26 826 826 HOH HOH . F 3 HOH B 27 827 827 HOH HOH . F 3 HOH B 28 828 828 HOH HOH . F 3 HOH B 29 829 829 HOH HOH . F 3 HOH B 30 830 830 HOH HOH . F 3 HOH B 31 831 831 HOH HOH . F 3 HOH B 32 832 832 HOH HOH . F 3 HOH B 33 833 833 HOH HOH . F 3 HOH B 34 834 834 HOH HOH . F 3 HOH B 35 835 835 HOH HOH . F 3 HOH B 36 836 836 HOH HOH . F 3 HOH B 37 837 837 HOH HOH . F 3 HOH B 38 838 838 HOH HOH . F 3 HOH B 39 839 839 HOH HOH . F 3 HOH B 40 840 840 HOH HOH . F 3 HOH B 41 841 841 HOH HOH . F 3 HOH B 42 842 842 HOH HOH . F 3 HOH B 43 843 843 HOH HOH . F 3 HOH B 44 844 844 HOH HOH . F 3 HOH B 45 845 845 HOH HOH . F 3 HOH B 46 846 846 HOH HOH . F 3 HOH B 47 847 847 HOH HOH . F 3 HOH B 48 848 848 HOH HOH . F 3 HOH B 49 849 849 HOH HOH . F 3 HOH B 50 850 850 HOH HOH . F 3 HOH B 51 851 851 HOH HOH . F 3 HOH B 52 852 852 HOH HOH . F 3 HOH B 53 853 853 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 8Y1 . . . D 2 53.539 -13.741 45.796 1 41.29 ? N1 8Y1 701 B 1 HETATM 2 C C6 8Y1 . . . D 2 51.424 -16.55 46.126 1 35.32 ? C6 8Y1 701 B 1 HETATM 3 C C7 8Y1 . . . D 2 50.223 -16.346 47.047 1 34.24 ? C7 8Y1 701 B 1 HETATM 4 C C8 8Y1 . . . D 2 48.963 -16.129 46.218 1 34.51 ? C8 8Y1 701 B 1 HETATM 5 C C10 8Y1 . . . D 2 46.736 -16.121 45.553 1 35.03 ? C10 8Y1 701 B 1 HETATM 6 C C13 8Y1 . . . D 2 50.36 -15.258 44.348 1 35.87 ? C13 8Y1 701 B 1 HETATM 7 C C15 8Y1 . . . D 2 47.17 -16.988 47.861 1 35.36 ? C15 8Y1 701 B 1 HETATM 8 C C17 8Y1 . . . D 2 45.808 -18.626 49.008 1 34.48 ? C17 8Y1 701 B 1 HETATM 9 C C20 8Y1 . . . D 2 47.56 -16.466 49.117 1 39.02 ? C20 8Y1 701 B 1 HETATM 10 C C21 8Y1 . . . D 2 53.044 -16.825 43.634 1 43.2 ? C21 8Y1 701 B 1 HETATM 11 C C22 8Y1 . . . D 2 52.329 -17.179 42.502 1 45.8 ? C22 8Y1 701 B 1 HETATM 12 C C24 8Y1 . . . D 2 53.361 -19.338 42.458 1 49.15 ? C24 8Y1 701 B 1 HETATM 13 C C26 8Y1 . . . D 2 53.899 -17.767 44.191 1 44.65 ? C26 8Y1 701 B 1 HETATM 14 C C2 8Y1 . . . D 2 53.903 -15.071 45.268 1 38.32 ? C2 8Y1 701 B 1 HETATM 15 C C3 8Y1 . . . D 2 52.795 -15.467 44.288 1 39.16 ? C3 8Y1 701 B 1 HETATM 16 N N5 8Y1 . . . D 2 51.498 -15.709 44.929 1 35.99 ? N5 8Y1 701 B 1 HETATM 17 C C9 8Y1 . . . D 2 47.638 -16.405 46.557 1 35.63 ? C9 8Y1 701 B 1 HETATM 18 S S11 8Y1 . . . D 2 47.529 -15.473 44.182 1 36.13 ? S11 8Y1 701 B 1 HETATM 19 C C12 8Y1 . . . D 2 49.078 -15.6 44.949 1 33.95 ? C12 8Y1 701 B 1 HETATM 20 O O14 8Y1 . . . D 2 50.365 -14.603 43.346 1 36.99 ? O14 8Y1 701 B 1 HETATM 21 C C16 8Y1 . . . D 2 46.279 -18.07 47.828 1 34.09 ? C16 8Y1 701 B 1 HETATM 22 C C18 8Y1 . . . D 2 46.228 -18.065 50.206 1 38.84 ? C18 8Y1 701 B 1 HETATM 23 N N19 8Y1 . . . D 2 47.082 -17.02 50.244 1 41.26 ? N19 8Y1 701 B 1 HETATM 24 C C23 8Y1 . . . D 2 52.496 -18.42 41.903 1 48.52 ? C23 8Y1 701 B 1 HETATM 25 C C25 8Y1 . . . D 2 54.058 -19.01 43.606 1 49.33 ? C25 8Y1 701 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #