data_6WL6 # _model_server_result.job_id hs2lJsYxfrgFd4x9W9SZCw _model_server_result.datetime_utc '2024-10-12 04:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6WL6 # _exptl.entry_id 6WL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(2R)-1-amino-4-methylpentan-2-yl]-3-(pyridin-3-yl)-5,6-dihydrothieno[2,3-c]pyridin-7(4H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6WL6 _cell.length_a 105.988 _cell.length_b 105.988 _cell.length_c 157.068 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 183.576601 52.356 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C18 H23 N3 O S' _chem_comp.formula_weight 329.46 _chem_comp.id 91A _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(2R)-1-amino-4-methylpentan-2-yl]-3-(pyridin-3-yl)-5,6-dihydrothieno[2,3-c]pyridin-7(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 91A sing 1 n n C1 C2 91A sing 2 n n C2 C4 91A sing 3 n n O18 C17 91A doub 4 n n C4 C5 91A sing 5 n n S15 C16 91A sing 6 n y S15 C14 91A sing 7 n y C17 C16 91A sing 8 n n C17 N9 91A sing 9 n n C5 N9 91A sing 10 n n C5 C7 91A sing 11 n n C16 C12 91A doub 12 n y N9 C10 91A sing 13 n n C7 N8 91A sing 14 n n C14 C13 91A doub 15 n y C10 C11 91A sing 16 n n C12 C13 91A sing 17 n y C12 C11 91A sing 18 n n C13 C19 91A sing 19 n n C24 C19 91A doub 20 n y C24 N23 91A sing 21 n y C19 C20 91A sing 22 n y N23 C22 91A doub 23 n y C20 C21 91A doub 24 n y C22 C21 91A sing 25 n y C4 H1 91A sing 26 n n C4 H2 91A sing 27 n n C5 H3 91A sing 28 n n C7 H4 91A sing 29 n n C7 H5 91A sing 30 n n C10 H6 91A sing 31 n n C10 H7 91A sing 32 n n C20 H8 91A sing 33 n n C21 H9 91A sing 34 n n C22 H10 91A sing 35 n n C24 H11 91A sing 36 n n C1 H12 91A sing 37 n n C1 H13 91A sing 38 n n C1 H14 91A sing 39 n n C2 H15 91A sing 40 n n C3 H16 91A sing 41 n n C3 H17 91A sing 42 n n C3 H18 91A sing 43 n n N8 H19 91A sing 44 n n N8 H20 91A sing 45 n n C11 H22 91A sing 46 n n C11 H23 91A sing 47 n n C14 H24 91A sing 48 n n # _atom_sites.entry_id 6WL6 _atom_sites.fract_transf_matrix[1][1] 0.009435 _atom_sites.fract_transf_matrix[1][2] 0.005447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 91A A 1 701 701 91A 91A . D 2 91A B 1 701 701 91A 91A . E 3 HOH A 1 801 801 HOH HOH . E 3 HOH A 2 802 802 HOH HOH . E 3 HOH A 3 803 803 HOH HOH . E 3 HOH A 4 804 804 HOH HOH . E 3 HOH A 5 805 805 HOH HOH . E 3 HOH A 6 806 806 HOH HOH . E 3 HOH A 7 807 807 HOH HOH . E 3 HOH A 8 808 808 HOH HOH . E 3 HOH A 9 809 809 HOH HOH . E 3 HOH A 10 810 810 HOH HOH . E 3 HOH A 11 811 811 HOH HOH . E 3 HOH A 12 812 812 HOH HOH . E 3 HOH A 13 813 813 HOH HOH . E 3 HOH A 14 814 814 HOH HOH . E 3 HOH A 15 815 815 HOH HOH . E 3 HOH A 16 816 816 HOH HOH . E 3 HOH A 17 817 817 HOH HOH . E 3 HOH A 18 818 818 HOH HOH . E 3 HOH A 19 819 819 HOH HOH . E 3 HOH A 20 820 820 HOH HOH . E 3 HOH A 21 821 821 HOH HOH . E 3 HOH A 22 822 822 HOH HOH . E 3 HOH A 23 823 823 HOH HOH . E 3 HOH A 24 824 824 HOH HOH . E 3 HOH A 25 825 825 HOH HOH . E 3 HOH A 26 826 826 HOH HOH . E 3 HOH A 27 827 827 HOH HOH . E 3 HOH A 28 828 828 HOH HOH . E 3 HOH A 29 829 829 HOH HOH . E 3 HOH A 30 830 830 HOH HOH . E 3 HOH A 31 831 831 HOH HOH . E 3 HOH A 32 832 832 HOH HOH . E 3 HOH A 33 833 833 HOH HOH . E 3 HOH A 34 834 834 HOH HOH . E 3 HOH A 35 835 835 HOH HOH . E 3 HOH A 36 836 836 HOH HOH . E 3 HOH A 37 837 837 HOH HOH . E 3 HOH A 38 838 838 HOH HOH . E 3 HOH A 39 839 839 HOH HOH . E 3 HOH A 40 840 840 HOH HOH . E 3 HOH A 41 841 841 HOH HOH . E 3 HOH A 42 842 842 HOH HOH . E 3 HOH A 43 843 843 HOH HOH . E 3 HOH A 44 844 844 HOH HOH . E 3 HOH A 45 845 845 HOH HOH . E 3 HOH A 46 846 846 HOH HOH . E 3 HOH A 47 847 847 HOH HOH . E 3 HOH A 48 848 848 HOH HOH . E 3 HOH A 49 849 849 HOH HOH . E 3 HOH A 50 850 850 HOH HOH . E 3 HOH A 51 851 851 HOH HOH . E 3 HOH A 52 852 852 HOH HOH . E 3 HOH A 53 853 853 HOH HOH . E 3 HOH A 54 854 854 HOH HOH . E 3 HOH A 55 855 855 HOH HOH . E 3 HOH A 56 856 856 HOH HOH . E 3 HOH A 57 857 857 HOH HOH . E 3 HOH A 58 858 858 HOH HOH . E 3 HOH A 59 859 859 HOH HOH . E 3 HOH A 60 860 860 HOH HOH . E 3 HOH A 61 861 861 HOH HOH . E 3 HOH A 62 862 862 HOH HOH . E 3 HOH A 63 863 863 HOH HOH . E 3 HOH A 64 864 864 HOH HOH . E 3 HOH A 65 865 865 HOH HOH . E 3 HOH A 66 866 866 HOH HOH . E 3 HOH A 67 867 867 HOH HOH . E 3 HOH A 68 868 868 HOH HOH . E 3 HOH A 69 869 869 HOH HOH . E 3 HOH A 70 870 870 HOH HOH . E 3 HOH A 71 871 871 HOH HOH . E 3 HOH A 72 872 872 HOH HOH . E 3 HOH A 73 873 873 HOH HOH . E 3 HOH A 74 874 874 HOH HOH . E 3 HOH A 75 875 875 HOH HOH . E 3 HOH A 76 876 876 HOH HOH . E 3 HOH A 77 877 877 HOH HOH . E 3 HOH A 78 878 878 HOH HOH . E 3 HOH A 79 879 879 HOH HOH . E 3 HOH A 80 880 880 HOH HOH . E 3 HOH A 81 881 881 HOH HOH . E 3 HOH A 82 882 882 HOH HOH . E 3 HOH A 83 883 883 HOH HOH . E 3 HOH A 84 884 884 HOH HOH . E 3 HOH A 85 885 885 HOH HOH . F 3 HOH B 1 801 801 HOH HOH . F 3 HOH B 2 802 802 HOH HOH . F 3 HOH B 3 803 803 HOH HOH . F 3 HOH B 4 804 804 HOH HOH . F 3 HOH B 5 805 805 HOH HOH . F 3 HOH B 6 806 806 HOH HOH . F 3 HOH B 7 807 807 HOH HOH . F 3 HOH B 8 808 808 HOH HOH . F 3 HOH B 9 809 809 HOH HOH . F 3 HOH B 10 810 810 HOH HOH . F 3 HOH B 11 811 811 HOH HOH . F 3 HOH B 12 812 812 HOH HOH . F 3 HOH B 13 813 813 HOH HOH . F 3 HOH B 14 814 814 HOH HOH . F 3 HOH B 15 815 815 HOH HOH . F 3 HOH B 16 816 816 HOH HOH . F 3 HOH B 17 817 817 HOH HOH . F 3 HOH B 18 818 818 HOH HOH . F 3 HOH B 19 819 819 HOH HOH . F 3 HOH B 20 820 820 HOH HOH . F 3 HOH B 21 821 821 HOH HOH . F 3 HOH B 22 822 822 HOH HOH . F 3 HOH B 23 823 823 HOH HOH . F 3 HOH B 24 824 824 HOH HOH . F 3 HOH B 25 825 825 HOH HOH . F 3 HOH B 26 826 826 HOH HOH . F 3 HOH B 27 827 827 HOH HOH . F 3 HOH B 28 828 828 HOH HOH . F 3 HOH B 29 829 829 HOH HOH . F 3 HOH B 30 830 830 HOH HOH . F 3 HOH B 31 831 831 HOH HOH . F 3 HOH B 32 832 832 HOH HOH . F 3 HOH B 33 833 833 HOH HOH . F 3 HOH B 34 834 834 HOH HOH . F 3 HOH B 35 835 835 HOH HOH . F 3 HOH B 36 836 836 HOH HOH . F 3 HOH B 37 837 837 HOH HOH . F 3 HOH B 38 838 838 HOH HOH . F 3 HOH B 39 839 839 HOH HOH . F 3 HOH B 40 840 840 HOH HOH . F 3 HOH B 41 841 841 HOH HOH . F 3 HOH B 42 842 842 HOH HOH . F 3 HOH B 43 843 843 HOH HOH . F 3 HOH B 44 844 844 HOH HOH . F 3 HOH B 45 845 845 HOH HOH . F 3 HOH B 46 846 846 HOH HOH . F 3 HOH B 47 847 847 HOH HOH . F 3 HOH B 48 848 848 HOH HOH . F 3 HOH B 49 849 849 HOH HOH . F 3 HOH B 50 850 850 HOH HOH . F 3 HOH B 51 851 851 HOH HOH . F 3 HOH B 52 852 852 HOH HOH . F 3 HOH B 53 853 853 HOH HOH . F 3 HOH B 54 854 854 HOH HOH . F 3 HOH B 55 855 855 HOH HOH . F 3 HOH B 56 856 856 HOH HOH . F 3 HOH B 57 857 857 HOH HOH . F 3 HOH B 58 858 858 HOH HOH . F 3 HOH B 59 859 859 HOH HOH . F 3 HOH B 60 860 860 HOH HOH . F 3 HOH B 61 861 861 HOH HOH . F 3 HOH B 62 862 862 HOH HOH . F 3 HOH B 63 863 863 HOH HOH . F 3 HOH B 64 864 864 HOH HOH . F 3 HOH B 65 865 865 HOH HOH . F 3 HOH B 66 866 866 HOH HOH . F 3 HOH B 67 867 867 HOH HOH . F 3 HOH B 68 868 868 HOH HOH . F 3 HOH B 69 869 869 HOH HOH . F 3 HOH B 70 870 870 HOH HOH . F 3 HOH B 71 871 871 HOH HOH . F 3 HOH B 72 872 872 HOH HOH . F 3 HOH B 73 873 873 HOH HOH . F 3 HOH B 74 874 874 HOH HOH . F 3 HOH B 75 875 875 HOH HOH . F 3 HOH B 76 876 876 HOH HOH . F 3 HOH B 77 877 877 HOH HOH . F 3 HOH B 78 878 878 HOH HOH . F 3 HOH B 79 879 879 HOH HOH . F 3 HOH B 80 880 880 HOH HOH . F 3 HOH B 81 881 881 HOH HOH . F 3 HOH B 82 882 882 HOH HOH . F 3 HOH B 83 883 883 HOH HOH . F 3 HOH B 84 884 884 HOH HOH . F 3 HOH B 85 885 885 HOH HOH . F 3 HOH B 86 886 886 HOH HOH . F 3 HOH B 87 887 887 HOH HOH . F 3 HOH B 88 888 888 HOH HOH . F 3 HOH B 89 889 889 HOH HOH . F 3 HOH B 90 890 890 HOH HOH . F 3 HOH B 91 891 891 HOH HOH . F 3 HOH B 92 892 892 HOH HOH . F 3 HOH B 93 893 893 HOH HOH . F 3 HOH B 94 894 894 HOH HOH . F 3 HOH B 95 895 895 HOH HOH . F 3 HOH B 96 896 896 HOH HOH . F 3 HOH B 97 897 897 HOH HOH . F 3 HOH B 98 898 898 HOH HOH . F 3 HOH B 99 899 899 HOH HOH . F 3 HOH B 100 900 900 HOH HOH . F 3 HOH B 101 901 901 HOH HOH . F 3 HOH B 102 902 902 HOH HOH . F 3 HOH B 103 903 903 HOH HOH . F 3 HOH B 104 904 904 HOH HOH . F 3 HOH B 105 905 905 HOH HOH . F 3 HOH B 106 906 906 HOH HOH . F 3 HOH B 107 907 907 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 91A . . . D 2 -0.463 108.788 43.736 1 23.84 ? C4 91A 701 B 1 HETATM 2 C C5 91A . . . D 2 0.062 107.44 44.284 1 23.8 ? C5 91A 701 B 1 HETATM 3 C C7 91A . . . D 2 -0.943 106.881 45.302 1 24.3 ? C7 91A 701 B 1 HETATM 4 C C10 91A . . . D 2 1.527 108.458 46.087 1 23.12 ? C10 91A 701 B 1 HETATM 5 C C13 91A . . . D 2 5.295 108.137 46.429 1 21.14 ? C13 91A 701 B 1 HETATM 6 C C17 91A . . . D 2 2.486 107.098 44.265 1 22.07 ? C17 91A 701 B 1 HETATM 7 C C20 91A . . . D 2 5.411 108.232 48.99 1 21.11 ? C20 91A 701 B 1 HETATM 8 C C21 91A . . . D 2 5.955 108.821 50.13 1 20.88 ? C21 91A 701 B 1 HETATM 9 C C22 91A . . . D 2 6.863 109.864 49.989 1 21.4 ? C22 91A 701 B 1 HETATM 10 C C24 91A . . . D 2 6.723 109.759 47.657 1 20.73 ? C24 91A 701 B 1 HETATM 11 C C1 91A . . . D 2 0.058 110.922 42.556 1 24.68 ? C1 91A 701 B 1 HETATM 12 C C2 91A . . . D 2 0.524 109.477 42.769 1 24.7 ? C2 91A 701 B 1 HETATM 13 C C3 91A . . . D 2 0.501 108.819 41.38 1 25.01 ? C3 91A 701 B 1 HETATM 14 N N8 91A . . . D 2 -0.533 105.515 45.667 1 24.66 ? N8 91A 701 B 1 HETATM 15 N N9 91A . . . D 2 1.396 107.641 44.873 1 22.93 ? N9 91A 701 B 1 HETATM 16 C C11 91A . . . D 2 2.705 108.091 46.989 1 22.2 ? C11 91A 701 B 1 HETATM 17 C C12 91A . . . D 2 3.95 107.891 46.123 1 22.06 ? C12 91A 701 B 1 HETATM 18 C C14 91A . . . D 2 6.149 107.854 45.399 1 20.87 ? C14 91A 701 B 1 HETATM 19 S S15 91A . . . D 2 5.327 107.245 44.034 1 22.02 ? S15 91A 701 B 1 HETATM 20 C C16 91A . . . D 2 3.792 107.39 44.834 1 21.69 ? C16 91A 701 B 1 HETATM 21 O O18 91A . . . D 2 2.405 106.46 43.247 1 22.27 ? O18 91A 701 B 1 HETATM 22 C C19 91A . . . D 2 5.81 108.693 47.718 1 20.93 ? C19 91A 701 B 1 HETATM 23 N N23 91A . . . D 2 7.218 110.294 48.777 1 21.29 ? N23 91A 701 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #