data_6WLP # _model_server_result.job_id rn_Lhtgmbi09KVTj5ErTSA _model_server_result.datetime_utc '2024-10-19 23:42:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5201}' # _entry.id 6WLP # _exptl.entry_id 6WLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WLP _cell.length_a 265.069 _cell.length_b 265.069 _cell.length_c 265.069 _cell.Z_PDB 168 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall 'I 2b 2c 3' _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,H,I,M,N,T,W 1 1 B,E,J,K,O,P,U,X 2 1 C,G,L,S,V,Z 3 1 F,Q,R,Y 4 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -132.5345 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 B CYS 17 1_555 D SG CYS 45 D CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf2 B SG CYS 45 A CYS 17 1_555 E SG CYS 45 E CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf3 C SG CYS 45 C CYS 17 1_555 G SG CYS 45 G CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf4 F SG CYS 45 F CYS 17 1_555 F SG CYS 45 F CYS 17 15_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 6WLP _atom_sites.fract_transf_matrix[1][1] 0.003773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 FMN B 1 5201 5201 FMN FMN . I 3 EDO B 1 5202 5202 EDO EDO . J 2 FMN A 1 5201 5201 FMN FMN . K 3 EDO A 1 5202 5202 EDO EDO . L 2 FMN C 1 5201 5201 FMN FMN . M 2 FMN D 1 5201 5201 FMN FMN . N 3 EDO D 1 5202 5202 EDO EDO . O 2 FMN E 1 5201 5201 FMN FMN . P 3 EDO E 1 5202 5202 EDO EDO . Q 2 FMN F 1 5201 5201 FMN FMN . R 3 EDO F 1 5202 5202 EDO EDO . S 2 FMN G 1 5201 5201 FMN FMN . T 4 HOH B 1 5301 5303 HOH HOH . T 4 HOH B 2 5302 5306 HOH HOH . T 4 HOH B 3 5303 5302 HOH HOH . T 4 HOH B 4 5304 5304 HOH HOH . T 4 HOH B 5 5305 9 HOH HOH . T 4 HOH B 6 5306 5313 HOH HOH . T 4 HOH B 7 5307 5301 HOH HOH . T 4 HOH B 8 5308 5305 HOH HOH . T 4 HOH B 9 5309 5308 HOH HOH . T 4 HOH B 10 5310 5310 HOH HOH . T 4 HOH B 11 5311 5311 HOH HOH . T 4 HOH B 12 5312 8 HOH HOH . T 4 HOH B 13 5313 5309 HOH HOH . T 4 HOH B 14 5314 5307 HOH HOH . T 4 HOH B 15 5315 5316 HOH HOH . T 4 HOH B 16 5316 5315 HOH HOH . T 4 HOH B 17 5317 5314 HOH HOH . T 4 HOH B 18 5318 5317 HOH HOH . U 4 HOH A 1 5301 5301 HOH HOH . U 4 HOH A 2 5302 5303 HOH HOH . U 4 HOH A 3 5303 2 HOH HOH . U 4 HOH A 4 5304 5304 HOH HOH . U 4 HOH A 5 5305 1 HOH HOH . U 4 HOH A 6 5306 5302 HOH HOH . U 4 HOH A 7 5307 5304 HOH HOH . U 4 HOH A 8 5308 5305 HOH HOH . U 4 HOH A 9 5309 5307 HOH HOH . U 4 HOH A 10 5310 5308 HOH HOH . U 4 HOH A 11 5311 5307 HOH HOH . U 4 HOH A 12 5312 5306 HOH HOH . U 4 HOH A 13 5313 5309 HOH HOH . V 4 HOH C 1 5301 5301 HOH HOH . V 4 HOH C 2 5302 5305 HOH HOH . V 4 HOH C 3 5303 5303 HOH HOH . V 4 HOH C 4 5304 5306 HOH HOH . V 4 HOH C 5 5305 4 HOH HOH . V 4 HOH C 6 5306 5308 HOH HOH . V 4 HOH C 7 5307 3 HOH HOH . V 4 HOH C 8 5308 5309 HOH HOH . V 4 HOH C 9 5309 5310 HOH HOH . V 4 HOH C 10 5310 5 HOH HOH . W 4 HOH D 1 5301 5302 HOH HOH . W 4 HOH D 2 5302 5303 HOH HOH . W 4 HOH D 3 5303 5305 HOH HOH . W 4 HOH D 4 5304 5304 HOH HOH . W 4 HOH D 5 5305 7 HOH HOH . W 4 HOH D 6 5306 6 HOH HOH . W 4 HOH D 7 5307 5306 HOH HOH . W 4 HOH D 8 5308 5305 HOH HOH . W 4 HOH D 9 5309 5308 HOH HOH . W 4 HOH D 10 5310 5307 HOH HOH . X 4 HOH E 1 5301 5303 HOH HOH . X 4 HOH E 2 5302 5313 HOH HOH . X 4 HOH E 3 5303 5305 HOH HOH . X 4 HOH E 4 5304 5308 HOH HOH . X 4 HOH E 5 5305 5304 HOH HOH . X 4 HOH E 6 5306 5306 HOH HOH . X 4 HOH E 7 5307 5307 HOH HOH . X 4 HOH E 8 5308 5314 HOH HOH . X 4 HOH E 9 5309 5309 HOH HOH . X 4 HOH E 10 5310 5311 HOH HOH . X 4 HOH E 11 5311 5302 HOH HOH . X 4 HOH E 12 5312 5310 HOH HOH . X 4 HOH E 13 5313 5315 HOH HOH . X 4 HOH E 14 5314 5316 HOH HOH . X 4 HOH E 15 5315 5317 HOH HOH . Y 4 HOH F 1 5301 5302 HOH HOH . Y 4 HOH F 2 5302 5301 HOH HOH . Y 4 HOH F 3 5303 5308 HOH HOH . Y 4 HOH F 4 5304 5304 HOH HOH . Y 4 HOH F 5 5305 5309 HOH HOH . Y 4 HOH F 6 5306 5303 HOH HOH . Y 4 HOH F 7 5307 5305 HOH HOH . Y 4 HOH F 8 5308 5307 HOH HOH . Y 4 HOH F 9 5309 10 HOH HOH . Y 4 HOH F 10 5310 5306 HOH HOH . Y 4 HOH F 11 5311 5311 HOH HOH . Y 4 HOH F 12 5312 5310 HOH HOH . Y 4 HOH F 13 5313 5313 HOH HOH . Y 4 HOH F 14 5314 11 HOH HOH . Y 4 HOH F 15 5315 5314 HOH HOH . Z 4 HOH G 1 5301 5302 HOH HOH . Z 4 HOH G 2 5302 5303 HOH HOH . Z 4 HOH G 3 5303 12 HOH HOH . Z 4 HOH G 4 5304 5307 HOH HOH . Z 4 HOH G 5 5305 13 HOH HOH . Z 4 HOH G 6 5306 5306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 2 -56.662 -14.048 28.413 1 39.19 ? N1 FMN 5201 B 1 HETATM 2 C C2 FMN . . . H 2 -57.711 -14.416 27.641 1 38.17 ? C2 FMN 5201 B 1 HETATM 3 O O2 FMN . . . H 2 -58.774 -14.49 28.211 1 40.89 ? O2 FMN 5201 B 1 HETATM 4 N N3 FMN . . . H 2 -57.554 -14.704 26.292 1 45.07 ? N3 FMN 5201 B 1 HETATM 5 C C4 FMN . . . H 2 -56.304 -14.585 25.705 1 41.56 ? C4 FMN 5201 B 1 HETATM 6 O O4 FMN . . . H 2 -56.199 -14.836 24.517 1 35.62 ? O4 FMN 5201 B 1 HETATM 7 C C4A FMN . . . H 2 -55.207 -14.18 26.49 1 45.75 ? C4A FMN 5201 B 1 HETATM 8 N N5 FMN . . . H 2 -53.926 -14.052 25.979 1 33.13 ? N5 FMN 5201 B 1 HETATM 9 C C5A FMN . . . H 2 -52.895 -13.687 26.836 1 39.66 ? C5A FMN 5201 B 1 HETATM 10 C C6 FMN . . . H 2 -51.601 -13.553 26.356 1 41.06 ? C6 FMN 5201 B 1 HETATM 11 C C7 FMN . . . H 2 -50.556 -13.169 27.189 1 41.24 ? C7 FMN 5201 B 1 HETATM 12 C C7M FMN . . . H 2 -49.148 -13.02 26.678 1 40.92 ? C7M FMN 5201 B 1 HETATM 13 C C8 FMN . . . H 2 -50.811 -12.935 28.512 1 42.85 ? C8 FMN 5201 B 1 HETATM 14 C C8M FMN . . . H 2 -49.694 -12.521 29.417 1 50.66 ? C8M FMN 5201 B 1 HETATM 15 C C9 FMN . . . H 2 -52.084 -13.073 29.012 1 43.48 ? C9 FMN 5201 B 1 HETATM 16 C C9A FMN . . . H 2 -53.124 -13.446 28.187 1 43.84 ? C9A FMN 5201 B 1 HETATM 17 N N10 FMN . . . H 2 -54.395 -13.548 28.706 1 44.02 ? N10 FMN 5201 B 1 HETATM 18 C C10 FMN . . . H 2 -55.412 -13.931 27.861 1 47.6 ? C10 FMN 5201 B 1 HETATM 19 C C1' FMN . . . H 2 -54.69 -13.33 30.165 1 44.79 ? C1' FMN 5201 B 1 HETATM 20 C C2' FMN . . . H 2 -54.93 -11.908 30.669 1 42.37 ? C2' FMN 5201 B 1 HETATM 21 O O2' FMN . . . H 2 -54.133 -10.984 29.989 1 39.96 ? O2' FMN 5201 B 1 HETATM 22 C C3' FMN . . . H 2 -54.646 -11.884 32.185 1 47.24 ? C3' FMN 5201 B 1 HETATM 23 O O3' FMN . . . H 2 -53.281 -12.157 32.473 1 45.99 ? O3' FMN 5201 B 1 HETATM 24 C C4' FMN . . . H 2 -55.564 -12.854 32.96 1 49.39 ? C4' FMN 5201 B 1 HETATM 25 O O4' FMN . . . H 2 -56.896 -12.5 32.592 1 41.07 ? O4' FMN 5201 B 1 HETATM 26 C C5' FMN . . . H 2 -55.411 -12.858 34.499 1 54.3 ? C5' FMN 5201 B 1 HETATM 27 O O5' FMN . . . H 2 -55.307 -11.559 35.061 1 52.43 ? O5' FMN 5201 B 1 HETATM 28 P P FMN . . . H 2 -56.626 -10.776 35.544 1 47.22 ? P FMN 5201 B 1 HETATM 29 O O1P FMN . . . H 2 -56.058 -9.532 36.174 1 40.39 ? O1P FMN 5201 B 1 HETATM 30 O O2P FMN . . . H 2 -57.617 -10.469 34.455 1 36.33 ? O2P FMN 5201 B 1 HETATM 31 O O3P FMN . . . H 2 -57.437 -11.669 36.426 1 42.85 ? O3P FMN 5201 B 1 HETATM 32 H HN3 FMN . . . H 2 -58.371 -15.008 25.724 1 54.08 ? HN3 FMN 5201 B 1 HETATM 33 H H6 FMN . . . H 2 -51.399 -13.753 25.304 1 49.27 ? H6 FMN 5201 B 1 HETATM 34 H HM71 FMN . . . H 2 -48.589 -12.361 27.341 1 49.1 ? HM71 FMN 5201 B 1 HETATM 35 H HM72 FMN . . . H 2 -48.667 -13.998 26.647 1 49.1 ? HM72 FMN 5201 B 1 HETATM 36 H HM73 FMN . . . H 2 -49.169 -12.594 25.675 1 49.1 ? HM73 FMN 5201 B 1 HETATM 37 H HM81 FMN . . . H 2 -50.078 -12.381 30.427 1 60.79 ? HM81 FMN 5201 B 1 HETATM 38 H HM82 FMN . . . H 2 -49.264 -11.586 29.058 1 60.79 ? HM82 FMN 5201 B 1 HETATM 39 H HM83 FMN . . . H 2 -48.927 -13.295 29.424 1 60.79 ? HM83 FMN 5201 B 1 HETATM 40 H H9 FMN . . . H 2 -52.274 -12.885 30.068 1 52.17 ? H9 FMN 5201 B 1 HETATM 41 H "H1'1" FMN . . . H 2 -53.853 -13.739 30.731 1 53.75 ? "H1'1" FMN 5201 B 1 HETATM 42 H "H1'2" FMN . . . H 2 -55.577 -13.915 30.408 1 53.75 ? "H1'2" FMN 5201 B 1 HETATM 43 H H2' FMN . . . H 2 -55.962 -11.617 30.477 1 50.84 ? H2' FMN 5201 B 1 HETATM 44 H HO2' FMN . . . H 2 -53.474 -10.604 30.607 1 47.95 ? HO2' FMN 5201 B 1 HETATM 45 H H3' FMN . . . H 2 -54.86 -10.87 32.525 1 56.69 ? H3' FMN 5201 B 1 HETATM 46 H HO3' FMN . . . H 2 -53.223 -12.915 33.092 1 55.18 ? HO3' FMN 5201 B 1 HETATM 47 H H4' FMN . . . H 2 -55.29 -13.872 32.685 1 59.27 ? H4' FMN 5201 B 1 HETATM 48 H HO4' FMN . . . H 2 -57.421 -12.319 33.399 1 49.29 ? HO4' FMN 5201 B 1 HETATM 49 H "H5'1" FMN . . . H 2 -56.272 -13.363 34.937 1 65.16 ? "H5'1" FMN 5201 B 1 HETATM 50 H "H5'2" FMN . . . H 2 -54.519 -13.428 34.762 1 65.16 ? "H5'2" FMN 5201 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 50 #