data_6WLW # _model_server_result.job_id 8BzY9e96Bbwp-2wIqO9cyw _model_server_result.datetime_utc '2024-10-26 14:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wlw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":505}' # _entry.id 6WLW # _exptl.entry_id 6WLW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WLW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id YA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 9 oligosaccharide 10 oligosaccharide 11 oligosaccharide 12 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 9 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 9 3 2 NGA GAL C1 O1 . O4 HO4 . sing 3 ? 9 4 3 GAL NGA C1 O1 . O3 HO3 . sing 4 ? 9 5 2 SIA GAL C2 O2 . O3 HO3 . sing 5 ? 10 2 1 NGA GAL C1 O1 . O4 HO4 . sing 6 ? 10 3 2 GAL NGA C1 O1 . O3 HO3 . sing 7 ? 10 4 1 SIA GAL C2 O2 . O3 HO3 . sing 8 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 12 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 12 3 2 BMA NAG C1 O1 . O4 HO4 . sing 11 ? 12 4 3 MAN BMA C1 O1 . O3 HO3 . sing 12 ? 12 5 4 MAN MAN C1 O1 . O2 HO2 . sing 13 ? 12 6 5 MAN MAN C1 O1 . O2 HO2 . sing 14 ? 12 7 6 GLC MAN C1 O1 . O3 HO3 . sing 15 ? 12 8 7 GLC GLC C1 O1 . O3 HO3 . sing 16 ? 12 9 8 GLC GLC C1 O1 . O2 HO2 . sing 17 ? 12 10 3 MAN BMA C1 O1 . O6 HO6 . sing 18 ? 12 11 10 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 9 n Q BGC 1 W 1 BGC W 45 BGC 9 n Q GAL 2 W 2 GAL W 46 GAL 9 n Q NGA 3 W 3 NGA W 47 NGA 9 n Q GAL 4 W 4 GAL W 48 GAL 9 n Q SIA 5 W 5 SIA W 49 SIA 10 n R GAL 1 A 1 GAL W 51 GAL 10 n R NGA 2 A 2 NGA W 52 NGA 10 n R GAL 3 A 3 GAL W 53 GAL 10 n R SIA 4 A 4 SIA W 54 SIA 11 n S NAG 1 s 1 NAG s 1 NAG 11 n S NAG 2 s 2 NAG s 2 NAG 12 n T NAG 1 r 1 NAG r 68 NAG 12 n T NAG 2 r 2 NAG r 69 NAG 12 n T BMA 3 r 3 BMA r 70 BMA 12 n T MAN 4 r 4 MAN r 71 MAN 12 n T MAN 5 r 5 MAN r 72 MAN 12 n T MAN 6 r 6 MAN r 73 MAN 12 n T GLC 7 r 7 GLC r 74 GLC 12 n T GLC 8 r 8 GLC r 75 GLC 12 n T GLC 9 r 9 GLC r 76 GLC 12 n T MAN 10 r 10 MAN r 77 MAN 12 n T MAN 11 r 11 MAN r 78 MAN 11 n U NAG 1 u 1 NAG u 1 NAG 11 n U NAG 2 u 2 NAG u 9 NAG 11 n V NAG 1 B 1 NAG u 3 NAG 11 n V NAG 2 B 2 NAG u 7 NAG 11 n W NAG 1 C 1 NAG u 4 NAG 11 n W NAG 2 C 2 NAG u 8 NAG 11 n X NAG 1 D 1 NAG u 6 NAG 11 n X NAG 2 D 2 NAG u 10 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 O SG CYS 371 U CYS 371 1_555 O SG CYS 418 U CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 M ND2 ASN 70 S ASN 70 1_555 S C1 NAG . s NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 O ND2 ASN 261 U ASN 261 1_555 V C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 O ND2 ASN 303 U ASN 303 1_555 W C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 O ND2 ASN 350 U ASN 350 1_555 U C1 NAG . u NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 O ND2 ASN 357 U ASN 357 1_555 YA C1 NAG . U NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 Q O4 BGC . W BGC 1 1_555 Q C1 GAL . W GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale7 Q O4 GAL . W GAL 2 1_555 Q C1 NGA . W NGA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale8 Q O3 GAL . W GAL 2 1_555 Q C2 SIA . W SIA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? covale ? covale9 Q O3 NGA . W NGA 3 1_555 Q C1 GAL . W GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 R O4 GAL . A GAL 1 1_555 R C1 NGA . A NGA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 R O3 GAL . A GAL 1 1_555 R C2 SIA . A SIA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? covale ? covale12 R O3 NGA . A NGA 2 1_555 R C1 GAL . A GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 S O4 NAG . s NAG 1 1_555 S C1 NAG . s NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 T O4 NAG . r NAG 1 1_555 T C1 NAG . r NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 sing covale ? covale15 T O4 NAG . r NAG 2 1_555 T C1 BMA . r BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale16 T O3 BMA . r BMA 3 1_555 T C1 MAN . r MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 T O6 BMA . r BMA 3 1_555 T C1 MAN . r MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale18 T O2 MAN . r MAN 4 1_555 T C1 MAN . r MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale19 T O2 MAN . r MAN 5 1_555 T C1 MAN . r MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 T O3 MAN . r MAN 6 1_555 T C1 GLC . r GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale21 T O3 GLC . r GLC 7 1_555 T C1 GLC . r GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale22 T O2 GLC . r GLC 8 1_555 T C1 GLC . r GLC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale23 T O6 MAN . r MAN 10 1_555 T C1 MAN . r MAN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale24 U O4 NAG . u NAG 1 1_555 U C1 NAG . u NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 sing covale ? covale25 V O4 NAG . B NAG 1 1_555 V C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale26 W O4 NAG . C NAG 1 1_555 W C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale27 X O4 NAG . D NAG 1 1_555 X C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 432 n n C1 O1 NAG sing 433 n n C1 O5 NAG sing 434 n n C1 H1 NAG sing 435 n n C2 C3 NAG sing 436 n n C2 N2 NAG sing 437 n n C2 H2 NAG sing 438 n n C3 C4 NAG sing 439 n n C3 O3 NAG sing 440 n n C3 H3 NAG sing 441 n n C4 C5 NAG sing 442 n n C4 O4 NAG sing 443 n n C4 H4 NAG sing 444 n n C5 C6 NAG sing 445 n n C5 O5 NAG sing 446 n n C5 H5 NAG sing 447 n n C6 O6 NAG sing 448 n n C6 H61 NAG sing 449 n n C6 H62 NAG sing 450 n n C7 C8 NAG sing 451 n n C7 N2 NAG sing 452 n n C7 O7 NAG doub 453 n n C8 H81 NAG sing 454 n n C8 H82 NAG sing 455 n n C8 H83 NAG sing 456 n n N2 HN2 NAG sing 457 n n O1 HO1 NAG sing 458 n n O3 HO3 NAG sing 459 n n O4 HO4 NAG sing 460 n n O6 HO6 NAG sing 461 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WLW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 13 WSS 0 1 301 2 WSS PCW . Z 13 WSS 0 1 302 4 WSS PCW . AA 13 WSS 0 1 303 5 WSS PCW . BA 13 WSS 0 1 304 11 WSS PCW . CA 14 PTY 0 1 305 30 PTY PTY . DA 14 PTY 0 1 306 33 PTY PTY . EA 13 WSS 1 1 201 6 WSS PCW . FA 14 PTY 2 1 201 24 PTY PTY . GA 13 WSS 3 1 201 8 WSS PCW . HA 15 WJS 3 1 202 40 WJS PSL . IA 16 CLR 5 1 201 12 CLR CLR . JA 14 PTY 5 1 202 27 PTY PTY . KA 14 PTY 6 1 201 28 PTY PTY . LA 14 PTY 6 1 202 34 PTY PTY . MA 14 PTY 8 1 201 35 PTY PTY . NA 14 PTY 8 1 202 37 PTY PTY . OA 16 CLR R 1 901 22 CLR CLR . PA 17 PSF R 1 902 23 PSF PSF . QA 14 PTY R 1 903 36 PTY PTY . RA 13 WSS R 1 904 38 WSS PCW . SA 18 WJP R 1 905 67 WJP DOP . TA 14 PTY S 1 101 26 PTY PTY . UA 13 WSS U 1 501 1 WSS PCW . VA 13 WSS U 1 502 3 WSS PCW . WA 14 PTY U 1 503 31 PTY PTY . XA 14 PTY U 1 504 32 PTY PTY . YA 19 NAG U 1 505 5 NAG NAG . ZA 13 WSS V 1 401 7 WSS PCW . AB 16 CLR V 1 402 10 CLR CLR . BB 16 CLR V 1 403 21 CLR CLR . CB 14 PTY V 1 404 29 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . YA 19 283.204 285.55 209.871 1 75.42 ? C1 NAG 505 U 1 HETATM 2 C C2 NAG . . . YA 19 283.933 284.251 209.541 1 75.42 ? C2 NAG 505 U 1 HETATM 3 C C3 NAG . . . YA 19 284.944 284.483 208.423 1 75.42 ? C3 NAG 505 U 1 HETATM 4 C C4 NAG . . . YA 19 284.267 285.124 207.219 1 75.42 ? C4 NAG 505 U 1 HETATM 5 C C5 NAG . . . YA 19 283.527 286.387 207.646 1 75.42 ? C5 NAG 505 U 1 HETATM 6 C C6 NAG . . . YA 19 282.733 287.016 206.526 1 75.42 ? C6 NAG 505 U 1 HETATM 7 C C7 NAG . . . YA 19 284.138 282.645 211.391 1 75.42 ? C7 NAG 505 U 1 HETATM 8 C C8 NAG . . . YA 19 282.889 282.011 210.857 1 75.42 ? C8 NAG 505 U 1 HETATM 9 N N2 NAG . . . YA 19 284.59 283.71 210.72 1 75.42 ? N2 NAG 505 U 1 HETATM 10 O O3 NAG . . . YA 19 285.529 283.242 208.046 1 75.42 ? O3 NAG 505 U 1 HETATM 11 O O4 NAG . . . YA 19 285.238 285.457 206.234 1 75.42 ? O4 NAG 505 U 1 HETATM 12 O O5 NAG . . . YA 19 282.593 286.072 208.689 1 75.42 ? O5 NAG 505 U 1 HETATM 13 O O6 NAG . . . YA 19 281.92 288.08 207.001 1 75.42 ? O6 NAG 505 U 1 HETATM 14 O O7 NAG . . . YA 19 284.713 282.211 212.383 1 75.42 ? O7 NAG 505 U 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #