data_6WM1 # _model_server_result.job_id bXnrUOFTPolZwJUZ4Jyceg _model_server_result.datetime_utc '2025-02-27 00:41:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 6WM1 # _exptl.entry_id 6WM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WM1 _cell.length_a 36.01 _cell.length_b 62.977 _cell.length_c 90.889 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,I,K 1 1 B,D,E,F,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 B ACE 1 1_555 C N PTR 2 B PTR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 C C PTR 2 B PTR 2 1_555 C N 02K 3 B 02K 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale3 C C 02K 3 B 02K 3 1_555 C N ASN 4 B ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale4 C C ASN 4 B ASN 4 1_555 C N PRA 5 B PRA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 D C ACE 1 D ACE 1 1_555 D N PTR 2 D PTR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 D C PTR 2 D PTR 2 1_555 D N 02K 3 D 02K 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 D C 02K 3 D 02K 3 1_555 D N ASN 4 D ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 D C ASN 4 D ASN 4 1_555 D N PRA 5 D PRA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OE1 GLU 100 A GLU 152 1_555 F CA CA . C CA 202 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc2 A OE2 GLU 100 A GLU 152 1_555 F CA CA . C CA 202 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 B OE1 GLU 100 C GLU 152 1_555 F CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 145 n n C1 C2 GOL sing 146 n n C1 H11 GOL sing 147 n n C1 H12 GOL sing 148 n n O1 HO1 GOL sing 149 n n C2 O2 GOL sing 150 n n C2 C3 GOL sing 151 n n C2 H2 GOL sing 152 n n O2 HO2 GOL sing 153 n n C3 O3 GOL sing 154 n n C3 H31 GOL sing 155 n n C3 H32 GOL sing 156 n n O3 HO3 GOL sing 157 n n # _atom_sites.entry_id 6WM1 _atom_sites.fract_transf_matrix[1][1] 0.02777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL C 1 201 1 GOL GOL . F 4 CA C 1 202 3 CA CA . G 5 CL C 1 203 4 CL CL . H 3 GOL D 1 101 2 GOL GOL . I 6 HOH A 1 201 91 HOH HOH . I 6 HOH A 2 202 125 HOH HOH . I 6 HOH A 3 203 101 HOH HOH . I 6 HOH A 4 204 126 HOH HOH . I 6 HOH A 5 205 31 HOH HOH . I 6 HOH A 6 206 25 HOH HOH . I 6 HOH A 7 207 79 HOH HOH . I 6 HOH A 8 208 121 HOH HOH . I 6 HOH A 9 209 36 HOH HOH . I 6 HOH A 10 210 86 HOH HOH . I 6 HOH A 11 211 27 HOH HOH . I 6 HOH A 12 212 9 HOH HOH . I 6 HOH A 13 213 48 HOH HOH . I 6 HOH A 14 214 75 HOH HOH . I 6 HOH A 15 215 49 HOH HOH . I 6 HOH A 16 216 146 HOH HOH . I 6 HOH A 17 217 78 HOH HOH . I 6 HOH A 18 218 90 HOH HOH . I 6 HOH A 19 219 30 HOH HOH . I 6 HOH A 20 220 100 HOH HOH . I 6 HOH A 21 221 96 HOH HOH . I 6 HOH A 22 222 109 HOH HOH . I 6 HOH A 23 223 77 HOH HOH . I 6 HOH A 24 224 108 HOH HOH . I 6 HOH A 25 225 37 HOH HOH . I 6 HOH A 26 226 6 HOH HOH . I 6 HOH A 27 227 107 HOH HOH . I 6 HOH A 28 228 67 HOH HOH . I 6 HOH A 29 229 54 HOH HOH . I 6 HOH A 30 230 112 HOH HOH . I 6 HOH A 31 231 23 HOH HOH . I 6 HOH A 32 232 80 HOH HOH . I 6 HOH A 33 233 4 HOH HOH . I 6 HOH A 34 234 74 HOH HOH . I 6 HOH A 35 235 111 HOH HOH . I 6 HOH A 36 236 7 HOH HOH . I 6 HOH A 37 237 84 HOH HOH . I 6 HOH A 38 238 103 HOH HOH . I 6 HOH A 39 239 117 HOH HOH . I 6 HOH A 40 240 51 HOH HOH . I 6 HOH A 41 241 10 HOH HOH . I 6 HOH A 42 242 95 HOH HOH . I 6 HOH A 43 243 99 HOH HOH . I 6 HOH A 44 244 55 HOH HOH . I 6 HOH A 45 245 116 HOH HOH . I 6 HOH A 46 246 136 HOH HOH . I 6 HOH A 47 247 11 HOH HOH . I 6 HOH A 48 248 28 HOH HOH . I 6 HOH A 49 249 114 HOH HOH . I 6 HOH A 50 250 81 HOH HOH . I 6 HOH A 51 251 123 HOH HOH . I 6 HOH A 52 252 98 HOH HOH . I 6 HOH A 53 253 118 HOH HOH . I 6 HOH A 54 254 89 HOH HOH . I 6 HOH A 55 255 115 HOH HOH . I 6 HOH A 56 256 42 HOH HOH . I 6 HOH A 57 257 53 HOH HOH . I 6 HOH A 58 258 14 HOH HOH . I 6 HOH A 59 259 119 HOH HOH . I 6 HOH A 60 260 105 HOH HOH . I 6 HOH A 61 261 124 HOH HOH . I 6 HOH A 62 262 76 HOH HOH . I 6 HOH A 63 263 94 HOH HOH . I 6 HOH A 64 264 110 HOH HOH . I 6 HOH A 65 265 83 HOH HOH . I 6 HOH A 66 266 32 HOH HOH . I 6 HOH A 67 267 46 HOH HOH . I 6 HOH A 68 268 140 HOH HOH . I 6 HOH A 69 269 33 HOH HOH . I 6 HOH A 70 270 26 HOH HOH . I 6 HOH A 71 271 87 HOH HOH . I 6 HOH A 72 272 85 HOH HOH . I 6 HOH A 73 273 52 HOH HOH . I 6 HOH A 74 274 88 HOH HOH . I 6 HOH A 75 275 104 HOH HOH . I 6 HOH A 76 276 133 HOH HOH . I 6 HOH A 77 277 120 HOH HOH . I 6 HOH A 78 278 50 HOH HOH . I 6 HOH A 79 279 144 HOH HOH . I 6 HOH A 80 280 66 HOH HOH . I 6 HOH A 81 281 47 HOH HOH . J 6 HOH C 1 301 44 HOH HOH . J 6 HOH C 2 302 20 HOH HOH . J 6 HOH C 3 303 18 HOH HOH . J 6 HOH C 4 304 40 HOH HOH . J 6 HOH C 5 305 106 HOH HOH . J 6 HOH C 6 306 70 HOH HOH . J 6 HOH C 7 307 72 HOH HOH . J 6 HOH C 8 308 129 HOH HOH . J 6 HOH C 9 309 39 HOH HOH . J 6 HOH C 10 310 137 HOH HOH . J 6 HOH C 11 311 1 HOH HOH . J 6 HOH C 12 312 127 HOH HOH . J 6 HOH C 13 313 142 HOH HOH . J 6 HOH C 14 314 128 HOH HOH . J 6 HOH C 15 315 145 HOH HOH . J 6 HOH C 16 316 102 HOH HOH . J 6 HOH C 17 317 29 HOH HOH . J 6 HOH C 18 318 62 HOH HOH . J 6 HOH C 19 319 135 HOH HOH . J 6 HOH C 20 320 12 HOH HOH . J 6 HOH C 21 321 38 HOH HOH . J 6 HOH C 22 322 64 HOH HOH . J 6 HOH C 23 323 58 HOH HOH . J 6 HOH C 24 324 3 HOH HOH . J 6 HOH C 25 325 61 HOH HOH . J 6 HOH C 26 326 5 HOH HOH . J 6 HOH C 27 327 56 HOH HOH . J 6 HOH C 28 328 71 HOH HOH . J 6 HOH C 29 329 97 HOH HOH . J 6 HOH C 30 330 17 HOH HOH . J 6 HOH C 31 331 68 HOH HOH . J 6 HOH C 32 332 21 HOH HOH . J 6 HOH C 33 333 134 HOH HOH . J 6 HOH C 34 334 15 HOH HOH . J 6 HOH C 35 335 59 HOH HOH . J 6 HOH C 36 336 130 HOH HOH . J 6 HOH C 37 337 8 HOH HOH . J 6 HOH C 38 338 57 HOH HOH . J 6 HOH C 39 339 122 HOH HOH . J 6 HOH C 40 340 2 HOH HOH . J 6 HOH C 41 341 45 HOH HOH . J 6 HOH C 42 342 41 HOH HOH . J 6 HOH C 43 343 143 HOH HOH . J 6 HOH C 44 344 22 HOH HOH . J 6 HOH C 45 345 24 HOH HOH . J 6 HOH C 46 346 60 HOH HOH . J 6 HOH C 47 347 93 HOH HOH . J 6 HOH C 48 348 132 HOH HOH . J 6 HOH C 49 349 65 HOH HOH . J 6 HOH C 50 350 69 HOH HOH . J 6 HOH C 51 351 63 HOH HOH . J 6 HOH C 52 352 73 HOH HOH . J 6 HOH C 53 353 113 HOH HOH . J 6 HOH C 54 354 19 HOH HOH . J 6 HOH C 55 355 92 HOH HOH . J 6 HOH C 56 356 138 HOH HOH . J 6 HOH C 57 357 141 HOH HOH . J 6 HOH C 58 358 43 HOH HOH . J 6 HOH C 59 359 139 HOH HOH . J 6 HOH C 60 360 131 HOH HOH . K 6 HOH B 1 101 82 HOH HOH . K 6 HOH B 2 102 13 HOH HOH . K 6 HOH B 3 103 35 HOH HOH . K 6 HOH B 4 104 147 HOH HOH . K 6 HOH B 5 105 34 HOH HOH . L 6 HOH D 1 201 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -17.953 5.282 -28.566 1 54 ? C1 GOL 101 D 1 HETATM 2 O O1 GOL . . . H 3 -18.039 5.901 -27.299 1 51.62 ? O1 GOL 101 D 1 HETATM 3 C C2 GOL . . . H 3 -16.486 5.3 -28.983 1 53.36 ? C2 GOL 101 D 1 HETATM 4 O O2 GOL . . . H 3 -16.132 3.985 -29.407 1 55.48 ? O2 GOL 101 D 1 HETATM 5 C C3 GOL . . . H 3 -16.333 6.266 -30.164 1 53.31 ? C3 GOL 101 D 1 HETATM 6 O O3 GOL . . . H 3 -15.016 6.138 -30.688 1 53.75 ? O3 GOL 101 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #