data_6WM2 # _model_server_result.job_id GrztIWG4_noNvGw9wjDxDg _model_server_result.datetime_utc '2024-11-05 15:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BB","auth_seq_id":303}' # _entry.id 6WM2 # _exptl.entry_id 6WM2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 25 _entity.src_method man _entity.type non-polymer _entity.pdbx_description tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WM2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 VA N N ? 25 ZA N N ? 25 AB N N ? 25 BB N N ? 25 DB N N ? 25 GB N N ? 25 IB N N ? 25 RB N N ? 25 SB N N ? 25 VB N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 18 oligosaccharide 19 oligosaccharide 20 oligosaccharide 21 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 18 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 18 3 2 NGA GAL C1 O1 . O4 HO4 . sing 3 ? 18 4 3 GAL NGA C1 O1 . O3 HO3 . sing 4 ? 18 5 2 SIA GAL C2 O2 . O3 HO3 . sing 5 ? 19 2 1 NGA GAL C1 O1 . O4 HO4 . sing 6 ? 19 3 2 GAL NGA C1 O1 . O3 HO3 . sing 7 ? 19 4 1 SIA GAL C2 O2 . O3 HO3 . sing 8 ? 20 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 21 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 21 3 2 BMA NAG C1 O1 . O4 HO4 . sing 11 ? 21 4 3 MAN BMA C1 O1 . O3 HO3 . sing 12 ? 21 5 4 MAN MAN C1 O1 . O2 HO2 . sing 13 ? 21 6 5 MAN MAN C1 O1 . O2 HO2 . sing 14 ? 21 7 6 GLC MAN C1 O1 . O3 HO3 . sing 15 ? 21 8 7 GLC GLC C1 O1 . O3 HO3 . sing 16 ? 21 9 8 GLC GLC C1 O1 . O2 HO2 . sing 17 ? 21 10 3 MAN BMA C1 O1 . O6 HO6 . sing 18 ? 21 11 10 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 18 n JA BGC 1 W 1 BGC W 45 BGC 18 n JA GAL 2 W 2 GAL W 46 GAL 18 n JA NGA 3 W 3 NGA W 47 NGA 18 n JA GAL 4 W 4 GAL W 48 GAL 18 n JA SIA 5 W 5 SIA W 49 SIA 19 n KA GAL 1 a 1 GAL W 51 GAL 19 n KA NGA 2 a 2 NGA W 52 NGA 19 n KA GAL 3 a 3 GAL W 53 GAL 19 n KA SIA 4 a 4 SIA W 54 SIA 20 n LA NAG 1 u 1 NAG u 1 NAG 20 n LA NAG 2 u 2 NAG u 9 NAG 20 n MA NAG 1 b 1 NAG u 3 NAG 20 n MA NAG 2 b 2 NAG u 7 NAG 20 n NA NAG 1 c 1 NAG u 4 NAG 20 n NA NAG 2 c 2 NAG u 8 NAG 20 n OA NAG 1 d 1 NAG u 6 NAG 20 n OA NAG 2 d 2 NAG u 10 NAG 20 n PA NAG 1 s 1 NAG s 81 NAG 20 n PA NAG 2 s 2 NAG s 82 NAG 21 n QA NAG 1 r 1 NAG r 1067 NAG 21 n QA NAG 2 r 2 NAG r 1068 NAG 21 n QA BMA 3 r 3 BMA r 1069 BMA 21 n QA MAN 4 r 4 MAN r 1070 MAN 21 n QA MAN 5 r 5 MAN r 1071 MAN 21 n QA MAN 6 r 6 MAN r 1072 MAN 21 n QA GLC 7 r 7 GLC r 1073 GLC 21 n QA GLC 8 r 8 GLC r 1074 GLC 21 n QA GLC 9 r 9 GLC r 1075 GLC 21 n QA MAN 10 r 10 MAN r 1076 MAN 21 n QA MAN 11 r 11 MAN r 1077 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 HA SG CYS 371 U CYS 371 1_555 HA SG CYS 418 U CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 I ND2 ASN 488 R ASN 488 1_555 WA C1 NAG . R NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 XA O34 WJP . R WJP 907 1_555 QA C1 NAG . r NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale3 FA ND2 ASN 70 S ASN 70 1_555 PA C1 NAG . s NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 HA ND2 ASN 261 U ASN 261 1_555 MA C1 NAG . b NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 HA ND2 ASN 303 U ASN 303 1_555 NA C1 NAG . c NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 HA ND2 ASN 350 U ASN 350 1_555 LA C1 NAG . u NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 HA ND2 ASN 357 U ASN 357 1_555 UB C1 NAG . U NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 JA O4 BGC . W BGC 1 1_555 JA C1 GAL . W GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 JA O4 GAL . W GAL 2 1_555 JA C1 NGA . W NGA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 JA O3 GAL . W GAL 2 1_555 JA C2 SIA . W SIA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.536 ? covale ? covale11 JA O3 NGA . W NGA 3 1_555 JA C1 GAL . W GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 KA O4 GAL . a GAL 1 1_555 KA C1 NGA . a NGA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 KA O3 GAL . a GAL 1 1_555 KA C2 SIA . a SIA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.538 ? covale ? covale14 KA O3 NGA . a NGA 2 1_555 KA C1 GAL . a GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 LA O4 NAG . u NAG 1 1_555 LA C1 NAG . u NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 sing covale ? covale16 MA O4 NAG . b NAG 1 1_555 MA C1 NAG . b NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale17 NA O4 NAG . c NAG 1 1_555 NA C1 NAG . c NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale18 OA O4 NAG . d NAG 1 1_555 OA C1 NAG . d NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale19 PA O4 NAG . s NAG 1 1_555 PA C1 NAG . s NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale20 QA O4 NAG . r NAG 1 1_555 QA C1 NAG . r NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale21 QA O4 NAG . r NAG 2 1_555 QA C1 BMA . r BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale22 QA O3 BMA . r BMA 3 1_555 QA C1 MAN . r MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale23 QA O6 BMA . r BMA 3 1_555 QA C1 MAN . r MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale24 QA O2 MAN . r MAN 4 1_555 QA C1 MAN . r MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale25 QA O2 MAN . r MAN 5 1_555 QA C1 MAN . r MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale26 QA O3 MAN . r MAN 6 1_555 QA C1 GLC . r GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale27 QA O3 GLC . r GLC 7 1_555 QA C1 GLC . r GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale28 QA O2 GLC . r GLC 8 1_555 QA C1 GLC . r GLC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale29 QA O6 MAN . r MAN 10 1_555 QA C1 MAN . r MAN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id WSS _chem_comp.mon_nstd_flag . _chem_comp.name tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6WM2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code RA 22 CLR R 1 901 22 CLR CLR . SA 23 PSF R 1 902 23 PSF PSF . TA 24 PTY R 1 903 26 PTY PTY . UA 24 PTY R 1 904 36 PTY PTY . VA 25 WSS R 1 905 38 WSS PCW . WA 26 NAG R 1 906 1000 NAG NAG . XA 27 WJP R 1 907 1066 WJP DOP . YA 28 ADP C 1 701 1 ADP ADP . ZA 25 WSS 0 1 301 1 WSS PCW . AB 25 WSS 0 1 302 2 WSS PCW . BB 25 WSS 0 1 303 5 WSS PCW . CB 22 CLR 0 1 304 10 CLR CLR . DB 25 WSS 0 1 305 11 WSS PCW . EB 24 PTY 0 1 306 30 PTY PTY . FB 24 PTY 0 1 307 33 PTY PTY . GB 25 WSS 1 1 201 6 WSS PCW . HB 24 PTY 2 1 201 24 PTY PTY . IB 25 WSS 3 1 201 8 WSS PCW . JB 29 WJS 3 1 202 40 WJS PSL . KB 22 CLR 5 1 201 12 CLR CLR . LB 24 PTY 5 1 202 27 PTY PTY . MB 24 PTY 6 1 201 28 PTY PTY . NB 24 PTY 7 1 201 34 PTY PTY . OB 24 PTY 8 1 201 35 PTY PTY . PB 24 PTY 8 1 202 37 PTY PTY . QB 24 PTY Q 1 401 31 PTY PTY . RB 25 WSS U 1 501 3 WSS PCW . SB 25 WSS U 1 502 4 WSS PCW . TB 24 PTY U 1 503 32 PTY PTY . UB 26 NAG U 1 504 5 NAG NAG . VB 25 WSS V 1 401 7 WSS PCW . WB 22 CLR V 1 402 21 CLR CLR . XB 24 PTY V 1 403 29 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WSS . . . BB 25 258.034 277.598 209.394 1 66.57 ? C1 WSS 303 0 1 HETATM 2 C C2 WSS . . . BB 25 258.182 276.722 208.173 1 66.57 ? C2 WSS 303 0 1 HETATM 3 C C3 WSS . . . BB 25 256.851 276.347 207.56 1 66.57 ? C3 WSS 303 0 1 HETATM 4 C C4 WSS . . . BB 25 262.006 279.461 210.135 1 66.57 ? C4 WSS 303 0 1 HETATM 5 C C5 WSS . . . BB 25 262.874 280.098 209.075 1 66.57 ? C5 WSS 303 0 1 HETATM 6 C C11 WSS . . . BB 25 255.385 274.513 207.511 1 66.57 ? C11 WSS 303 0 1 HETATM 7 C C12 WSS . . . BB 25 255.304 273.046 207.805 1 66.57 ? C12 WSS 303 0 1 HETATM 8 C C13 WSS . . . BB 25 254.252 272.339 207.011 1 66.57 ? C13 WSS 303 0 1 HETATM 9 C C31 WSS . . . BB 25 259.946 276.779 206.503 1 66.57 ? C31 WSS 303 0 1 HETATM 10 C C32 WSS . . . BB 25 259.739 275.312 206.267 1 66.57 ? C32 WSS 303 0 1 HETATM 11 C C33 WSS . . . BB 25 259.693 274.955 204.814 1 66.57 ? C33 WSS 303 0 1 HETATM 12 C C34 WSS . . . BB 25 259.336 273.5 204.58 1 66.57 ? C34 WSS 303 0 1 HETATM 13 C C35 WSS . . . BB 25 259.296 273.092 203.131 1 66.57 ? C35 WSS 303 0 1 HETATM 14 O O2 WSS . . . BB 25 259.049 277.446 207.253 1 66.57 ? O2 WSS 303 0 1 HETATM 15 O O3 WSS . . . BB 25 256.437 275.074 208.096 1 66.57 ? O3 WSS 303 0 1 HETATM 16 O O11 WSS . . . BB 25 254.605 275.129 206.838 1 66.57 ? O11 WSS 303 0 1 HETATM 17 O O31 WSS . . . BB 25 260.892 277.355 206.04 1 66.57 ? O31 WSS 303 0 1 HETATM 18 O O1P WSS . . . BB 25 258.291 280.337 210.747 1 66.57 ? O1P WSS 303 0 1 HETATM 19 O O2P WSS . . . BB 25 259.777 278.589 211.975 1 66.57 ? O2P WSS 303 0 1 HETATM 20 O O3P WSS . . . BB 25 259.27 278.342 209.529 1 66.57 ? O3P WSS 303 0 1 HETATM 21 O O4P WSS . . . BB 25 260.758 280.18 210.284 1 66.57 ? O4P WSS 303 0 1 HETATM 22 P P WSS . . . BB 25 259.447 279.377 210.741 1 66.57 ? P WSS 303 0 1 HETATM 23 N N1 WSS . . . BB 25 263.512 281.427 209.424 1 66.57 ? N1 WSS 303 0 1 HETATM 24 C C7 WSS . . . BB 25 264.587 281.731 208.452 1 66.57 ? C7 WSS 303 0 1 HETATM 25 C C8 WSS . . . BB 25 264.091 281.37 210.788 1 66.57 ? C8 WSS 303 0 1 HETATM 26 C C9 WSS . . . BB 25 262.504 282.513 209.366 1 66.57 ? C9 WSS 303 0 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 106 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #