data_6WM3 # _model_server_result.job_id 69WW79gQQDkVpBPhNKMjzg _model_server_result.datetime_utc '2024-11-04 22:39:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":505}' # _entry.id 6WM3 # _exptl.entry_id 6WM3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 18 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WM3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 JA N N ? 18 KA N N ? 18 LA N N ? 18 MA N N ? 18 NA N N ? 18 OA N N ? 18 PA N N ? 18 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 K SG CYS 371 U CYS 371 1_555 K SG CYS 418 U CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 488 R ASN 488 1_555 JA C1 NAG . R NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 I ND2 ASN 70 S ASN 70 1_555 KA C1 NAG . S NAG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 K ND2 ASN 261 U ASN 261 1_555 NA C1 NAG . U NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 K ND2 ASN 273 U ASN 273 1_555 QA C1 NAG . U NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 K ND2 ASN 296 U ASN 296 1_555 MA C1 NAG . U NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 K ND2 ASN 303 U ASN 303 1_555 OA C1 NAG . U NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 K ND2 ASN 350 U ASN 350 1_555 LA C1 NAG . U NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 K ND2 ASN 357 U ASN 357 1_555 PA C1 NAG . U NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6WM3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 18 NAG R 1 901 833 NAG NAG . KA 18 NAG S 1 101 81 NAG NAG . LA 18 NAG U 1 501 459 NAG NAG . MA 18 NAG U 1 502 460 NAG NAG . NA 18 NAG U 1 503 461 NAG NAG . OA 18 NAG U 1 504 462 NAG NAG . PA 18 NAG U 1 505 463 NAG NAG . QA 18 NAG U 1 506 464 NAG NAG . RA 19 ADP B 1 701 1 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . PA 18 261.297 301.625 197.774 1 69.11 ? C1 NAG 505 U 1 HETATM 2 C C2 NAG . . . PA 18 260.601 301.643 196.422 1 69.11 ? C2 NAG 505 U 1 HETATM 3 C C3 NAG . . . PA 18 259.722 302.883 196.301 1 69.11 ? C3 NAG 505 U 1 HETATM 4 C C4 NAG . . . PA 18 258.766 302.969 197.482 1 69.11 ? C4 NAG 505 U 1 HETATM 5 C C5 NAG . . . PA 18 259.539 302.879 198.792 1 69.11 ? C5 NAG 505 U 1 HETATM 6 C C6 NAG . . . PA 18 258.638 302.835 200 1 69.11 ? C6 NAG 505 U 1 HETATM 7 C C7 NAG . . . PA 18 261.736 300.529 194.551 1 69.11 ? C7 NAG 505 U 1 HETATM 8 C C8 NAG . . . PA 18 260.848 299.356 194.834 1 69.11 ? C8 NAG 505 U 1 HETATM 9 N N2 NAG . . . PA 18 261.571 301.595 195.341 1 69.11 ? N2 NAG 505 U 1 HETATM 10 O O3 NAG . . . PA 18 258.984 302.832 195.087 1 69.11 ? O3 NAG 505 U 1 HETATM 11 O O4 NAG . . . PA 18 258.052 304.199 197.442 1 69.11 ? O4 NAG 505 U 1 HETATM 12 O O5 NAG . . . PA 18 260.324 301.678 198.813 1 69.11 ? O5 NAG 505 U 1 HETATM 13 O O6 NAG . . . PA 18 257.387 303.445 199.718 1 69.11 ? O6 NAG 505 U 1 HETATM 14 O O7 NAG . . . PA 18 262.563 300.513 193.646 1 69.11 ? O7 NAG 505 U 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 119 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #