data_6WM4
#
_model_server_result.job_id            j78-o-Pgl_vKGkGVHXmoiw 
_model_server_result.datetime_utc      '2024-12-02 01:24:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wm4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":901}' 
#
_entry.id    6WM4 
#
_exptl.entry_id    6WM4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          18 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WM4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WM4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    35-meric 
_pdbx_struct_assembly.oligomeric_count      35 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 JA N N 
? 18 KA N N 
? 18 MA N N 
? 18 NA N N 
? 18 OA N N 
? 18 PA N N 
? 18 QA N N 
? 18 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 V SG CYS 371 U CYS 371 1_555 V SG CYS 418 U CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 488 R ASN 488 1_555 JA C1 NAG . R NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 V ND2 ASN 261 U ASN 261 1_555 OA C1 NAG . U NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 V ND2 ASN 273 U ASN 273 1_555 RA C1 NAG . U NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 V ND2 ASN 296 U ASN 296 1_555 NA C1 NAG . U NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 V ND2 ASN 303 U ASN 303 1_555 PA C1 NAG . U NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale6 V ND2 ASN 350 U ASN 350 1_555 MA C1 NAG . U NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 V ND2 ASN 357 U ASN 357 1_555 QA C1 NAG . U NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 279 n n 
C1 O1 NAG sing 280 n n 
C1 O5 NAG sing 281 n n 
C1 H1 NAG sing 282 n n 
C2 C3 NAG sing 283 n n 
C2 N2 NAG sing 284 n n 
C2 H2 NAG sing 285 n n 
C3 C4 NAG sing 286 n n 
C3 O3 NAG sing 287 n n 
C3 H3 NAG sing 288 n n 
C4 C5 NAG sing 289 n n 
C4 O4 NAG sing 290 n n 
C4 H4 NAG sing 291 n n 
C5 C6 NAG sing 292 n n 
C5 O5 NAG sing 293 n n 
C5 H5 NAG sing 294 n n 
C6 O6 NAG sing 295 n n 
C6 H61 NAG sing 296 n n 
C6 H62 NAG sing 297 n n 
C7 C8 NAG sing 298 n n 
C7 N2 NAG sing 299 n n 
C7 O7 NAG doub 300 n n 
C8 H81 NAG sing 301 n n 
C8 H82 NAG sing 302 n n 
C8 H83 NAG sing 303 n n 
N2 HN2 NAG sing 304 n n 
O1 HO1 NAG sing 305 n n 
O3 HO3 NAG sing 306 n n 
O4 HO4 NAG sing 307 n n 
O6 HO6 NAG sing 308 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6WM4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
JA 18 NAG R 1 901 833 NAG NAG . 
KA 18 NAG R 1 902 81 NAG NAG . 
LA 19 ADP A 1 701 1 ADP ADP . 
MA 18 NAG U 1 501 459 NAG NAG . 
NA 18 NAG U 1 502 460 NAG NAG . 
OA 18 NAG U 1 503 461 NAG NAG . 
PA 18 NAG U 1 504 462 NAG NAG . 
QA 18 NAG U 1 505 463 NAG NAG . 
RA 18 NAG U 1 506 464 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . JA 18 237.377 299.119 256.903 1 203.36 ? C1 NAG 901 R 1 
HETATM 2 C C2 NAG . . . JA 18 238.897 299.226 256.977 1 203.36 ? C2 NAG 901 R 1 
HETATM 3 C C3 NAG . . . JA 18 239.39 298.795 258.357 1 203.36 ? C3 NAG 901 R 1 
HETATM 4 C C4 NAG . . . JA 18 238.671 299.583 259.441 1 203.36 ? C4 NAG 901 R 1 
HETATM 5 C C5 NAG . . . JA 18 237.159 299.467 259.263 1 203.36 ? C5 NAG 901 R 1 
HETATM 6 C C6 NAG . . . JA 18 236.38 300.32 260.235 1 203.36 ? C6 NAG 901 R 1 
HETATM 7 C C7 NAG . . . JA 18 239.937 298.934 254.779 1 203.36 ? C7 NAG 901 R 1 
HETATM 8 C C8 NAG . . . JA 18 240.551 297.96 253.823 1 203.36 ? C8 NAG 901 R 1 
HETATM 9 N N2 NAG . . . JA 18 239.524 298.426 255.941 1 203.36 ? N2 NAG 901 R 1 
HETATM 10 O O3 NAG . . . JA 18 240.792 299.012 258.442 1 203.36 ? O3 NAG 901 R 1 
HETATM 11 O O4 NAG . . . JA 18 239.031 299.079 260.721 1 203.36 ? O4 NAG 901 R 1 
HETATM 12 O O5 NAG . . . JA 18 236.788 299.901 257.947 1 203.36 ? O5 NAG 901 R 1 
HETATM 13 O O6 NAG . . . JA 18 235.421 301.116 259.553 1 203.36 ? O6 NAG 901 R 1 
HETATM 14 O O7 NAG . . . JA 18 239.822 300.126 254.514 1 203.36 ? O7 NAG 901 R 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    95 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#