data_6WMV # _model_server_result.job_id BXXZlKNxCirOJPg-8JKx4g _model_server_result.datetime_utc '2024-11-13 07:16:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":308}' # _entry.id 6WMV # _exptl.entry_id 6WMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.74 _cell.angle_gamma 90 _cell.entry_id 6WMV _cell.length_a 78.089 _cell.length_b 60.857 _cell.length_c 85.417 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 169 A ASP 31 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A OD2 ASP 169 A ASP 31 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc3 A OG1 THR 172 A THR 34 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A O ASP 206 A ASP 68 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 A OD1 ASP 206 A ASP 68 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 A OD1 ASP 206 A ASP 68 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 A OD2 ASP 206 A ASP 68 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc8 A OD1 ASP 209 A ASP 71 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc9 A OD2 ASP 209 A ASP 71 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 A OG1 THR 220 A THR 82 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc11 A OD1 ASP 227 A ASP 89 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc12 A O ASP 227 A ASP 89 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc13 A OD1 ASP 227 A ASP 89 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc14 A OD1 ASP 231 A ASP 93 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc15 D NA NA . A NA 302 1_555 G O16 TCE . A TCE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc16 B OD1 ASP 206 C ASP 68 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc17 B OD2 ASP 206 C ASP 68 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc18 B OD1 ASP 227 C ASP 89 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc19 B OD1 ASP 231 C ASP 93 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 422 n n C10 C9 OLC doub 423 n n C10 C11 OLC sing 424 n n C9 C8 OLC sing 425 n n C17 C16 OLC sing 426 z n C11 C12 OLC sing 427 n n C8 C7 OLC sing 428 n n C24 C22 OLC sing 429 n n C24 O25 OLC sing 430 n n C16 C15 OLC sing 431 n n C12 C13 OLC sing 432 n n C7 C6 OLC sing 433 n n C15 C14 OLC sing 434 n n C13 C14 OLC sing 435 n n C6 C5 OLC sing 436 n n C5 C4 OLC sing 437 n n C4 C3 OLC sing 438 n n C3 C2 OLC sing 439 n n C2 C1 OLC sing 440 n n C21 C22 OLC sing 441 n n C21 O20 OLC sing 442 n n C1 O19 OLC doub 443 n n C1 O20 OLC sing 444 n n C22 O23 OLC sing 445 n n C18 H18 OLC sing 446 n n C18 H18A OLC sing 447 n n C18 H18B OLC sing 448 n n C10 H10 OLC sing 449 n n C9 H9 OLC sing 450 n n C17 H17 OLC sing 451 n n C17 H17A OLC sing 452 n n C11 H11 OLC sing 453 n n C11 H11A OLC sing 454 n n C8 H8 OLC sing 455 n n C8 H8A OLC sing 456 n n C24 H24 OLC sing 457 n n C24 H24A OLC sing 458 n n C16 H16 OLC sing 459 n n C16 H16A OLC sing 460 n n C12 H12 OLC sing 461 n n C12 H12A OLC sing 462 n n C7 H7 OLC sing 463 n n C7 H7A OLC sing 464 n n C15 H15 OLC sing 465 n n C15 H15A OLC sing 466 n n C13 H13 OLC sing 467 n n C13 H13A OLC sing 468 n n C6 H6 OLC sing 469 n n C6 H6A OLC sing 470 n n C14 H14 OLC sing 471 n n C14 H14A OLC sing 472 n n C5 H5 OLC sing 473 n n C5 H5A OLC sing 474 n n C4 H4 OLC sing 475 n n C4 H4A OLC sing 476 n n C3 H3 OLC sing 477 n n C3 H3A OLC sing 478 n n C2 H2 OLC sing 479 n n C2 H2A OLC sing 480 n n C21 H21 OLC sing 481 n n C21 H21A OLC sing 482 n n C22 H22 OLC sing 483 n n O25 HO25 OLC sing 484 n n O23 HO23 OLC sing 485 n n # _atom_sites.entry_id 6WMV _atom_sites.fract_transf_matrix[1][1] 0.012806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LIP A 1 301 301 LIP LIP . D 3 NA A 1 302 302 NA NA . E 3 NA A 1 303 303 NA NA . F 3 NA A 1 304 304 NA NA . G 4 TCE A 1 305 305 TCE TCE . H 5 1PE A 1 306 306 1PE 1PE . I 6 OLC A 1 307 307 OLC OLC . J 6 OLC A 1 308 308 OLC OLC . K 6 OLC A 1 309 309 OLC OLC . L 7 8K6 A 1 310 310 8K6 8K6 . M 7 8K6 A 1 311 311 8K6 8K6 . N 7 8K6 A 1 312 312 8K6 8K6 . O 7 8K6 A 1 313 313 8K6 8K6 . P 8 GOL A 1 314 314 GOL GOL . Q 9 C5P C 1 301 301 C5P C5P . R 10 FLC C 1 302 302 FLC FLC . S 3 NA C 1 303 303 NA NA . T 5 1PE C 1 304 304 1PE 1PE . U 6 OLC C 1 305 305 OLC OLC . V 6 OLC C 1 306 306 OLC OLC . W 6 OLC C 1 307 307 OLC OLC . X 6 OLC C 1 308 308 OLC OLC . Y 7 8K6 C 1 309 309 8K6 8K6 . Z 7 8K6 C 1 310 310 8K6 8K6 . AA 8 GOL C 1 311 311 GOL GOL . BA 8 GOL C 1 312 312 GOL GOL . CA 11 HOH A 1 401 316 HOH HOH . CA 11 HOH A 2 402 315 HOH HOH . CA 11 HOH A 3 403 325 HOH HOH . CA 11 HOH A 4 404 322 HOH HOH . CA 11 HOH A 5 405 316 HOH HOH . CA 11 HOH A 6 406 319 HOH HOH . CA 11 HOH A 7 407 328 HOH HOH . CA 11 HOH A 8 408 315 HOH HOH . CA 11 HOH A 9 409 326 HOH HOH . CA 11 HOH A 10 410 324 HOH HOH . CA 11 HOH A 11 411 324 HOH HOH . CA 11 HOH A 12 412 323 HOH HOH . CA 11 HOH A 13 413 318 HOH HOH . CA 11 HOH A 14 414 317 HOH HOH . CA 11 HOH A 15 415 321 HOH HOH . CA 11 HOH A 16 416 320 HOH HOH . DA 11 HOH C 1 401 313 HOH HOH . DA 11 HOH C 2 402 321 HOH HOH . DA 11 HOH C 3 403 323 HOH HOH . DA 11 HOH C 4 404 317 HOH HOH . DA 11 HOH C 5 405 319 HOH HOH . DA 11 HOH C 6 406 314 HOH HOH . DA 11 HOH C 7 407 320 HOH HOH . DA 11 HOH C 8 408 327 HOH HOH . DA 11 HOH C 9 409 326 HOH HOH . DA 11 HOH C 10 410 318 HOH HOH . DA 11 HOH C 11 411 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . J 6 4.337 -21.355 60.318 1 55.05 ? C24 OLC 308 A 1 HETATM 2 C C5 OLC . . . J 6 6.803 -23.135 50.823 1 47.54 ? C5 OLC 308 A 1 HETATM 3 C C4 OLC . . . J 6 5.69 -22.87 51.833 1 43.69 ? C4 OLC 308 A 1 HETATM 4 C C3 OLC . . . J 6 6.223 -22.841 53.262 1 35.25 ? C3 OLC 308 A 1 HETATM 5 C C2 OLC . . . J 6 5.127 -22.372 54.211 1 40.66 ? C2 OLC 308 A 1 HETATM 6 C C21 OLC . . . J 6 5.196 -21.547 57.986 1 38.31 ? C21 OLC 308 A 1 HETATM 7 C C1 OLC . . . J 6 5.658 -22.143 55.607 1 48.86 ? C1 OLC 308 A 1 HETATM 8 C C22 OLC . . . J 6 3.987 -21.192 58.842 1 56.71 ? C22 OLC 308 A 1 HETATM 9 O O19 OLC . . . J 6 6.809 -22.423 55.906 1 49.49 ? O19 OLC 308 A 1 HETATM 10 O O25 OLC . . . J 6 4.852 -22.673 60.542 1 44.51 ? O25 OLC 308 A 1 HETATM 11 O O23 OLC . . . J 6 3.594 -19.839 58.571 1 65.09 ? O23 OLC 308 A 1 HETATM 12 O O20 OLC . . . J 6 4.781 -21.583 56.624 1 47.43 ? O20 OLC 308 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #