data_6WMV
#
_model_server_result.job_id            8b7qEIsSshdDnQVNZiioHA 
_model_server_result.datetime_utc      '2024-11-13 07:06:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":308}' 
#
_entry.id    6WMV 
#
_exptl.entry_id    6WMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.74 
_cell.angle_gamma         90 
_cell.entry_id            6WMV 
_cell.length_a            78.089 
_cell.length_b            60.857 
_cell.length_c            85.417 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 169 A ASP 31 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc2 A OD2 ASP 169 A ASP 31 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc3 A OG1 THR 172 A THR 34 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc4 A O ASP 206 A ASP 68 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc5 A OD1 ASP 206 A ASP 68 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc6 A OD1 ASP 206 A ASP 68 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc7 A OD2 ASP 206 A ASP 68 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc8 A OD1 ASP 209 A ASP 71 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc9 A OD2 ASP 209 A ASP 71 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc10 A OG1 THR 220 A THR 82 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc11 A OD1 ASP 227 A ASP 89 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc12 A O ASP 227 A ASP 89 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc13 A OD1 ASP 227 A ASP 89 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc14 A OD1 ASP 231 A ASP 93 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc15 D NA NA . A NA 302 1_555 G O16 TCE . A TCE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? 
metalc ? metalc16 B OD1 ASP 206 C ASP 68 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc17 B OD2 ASP 206 C ASP 68 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc18 B OD1 ASP 227 C ASP 89 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc19 B OD1 ASP 231 C ASP 93 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 422 n n 
C10 C9 OLC doub 423 n n 
C10 C11 OLC sing 424 n n 
C9 C8 OLC sing 425 n n 
C17 C16 OLC sing 426 z n 
C11 C12 OLC sing 427 n n 
C8 C7 OLC sing 428 n n 
C24 C22 OLC sing 429 n n 
C24 O25 OLC sing 430 n n 
C16 C15 OLC sing 431 n n 
C12 C13 OLC sing 432 n n 
C7 C6 OLC sing 433 n n 
C15 C14 OLC sing 434 n n 
C13 C14 OLC sing 435 n n 
C6 C5 OLC sing 436 n n 
C5 C4 OLC sing 437 n n 
C4 C3 OLC sing 438 n n 
C3 C2 OLC sing 439 n n 
C2 C1 OLC sing 440 n n 
C21 C22 OLC sing 441 n n 
C21 O20 OLC sing 442 n n 
C1 O19 OLC doub 443 n n 
C1 O20 OLC sing 444 n n 
C22 O23 OLC sing 445 n n 
C18 H18 OLC sing 446 n n 
C18 H18A OLC sing 447 n n 
C18 H18B OLC sing 448 n n 
C10 H10 OLC sing 449 n n 
C9 H9 OLC sing 450 n n 
C17 H17 OLC sing 451 n n 
C17 H17A OLC sing 452 n n 
C11 H11 OLC sing 453 n n 
C11 H11A OLC sing 454 n n 
C8 H8 OLC sing 455 n n 
C8 H8A OLC sing 456 n n 
C24 H24 OLC sing 457 n n 
C24 H24A OLC sing 458 n n 
C16 H16 OLC sing 459 n n 
C16 H16A OLC sing 460 n n 
C12 H12 OLC sing 461 n n 
C12 H12A OLC sing 462 n n 
C7 H7 OLC sing 463 n n 
C7 H7A OLC sing 464 n n 
C15 H15 OLC sing 465 n n 
C15 H15A OLC sing 466 n n 
C13 H13 OLC sing 467 n n 
C13 H13A OLC sing 468 n n 
C6 H6 OLC sing 469 n n 
C6 H6A OLC sing 470 n n 
C14 H14 OLC sing 471 n n 
C14 H14A OLC sing 472 n n 
C5 H5 OLC sing 473 n n 
C5 H5A OLC sing 474 n n 
C4 H4 OLC sing 475 n n 
C4 H4A OLC sing 476 n n 
C3 H3 OLC sing 477 n n 
C3 H3A OLC sing 478 n n 
C2 H2 OLC sing 479 n n 
C2 H2A OLC sing 480 n n 
C21 H21 OLC sing 481 n n 
C21 H21A OLC sing 482 n n 
C22 H22 OLC sing 483 n n 
O25 HO25 OLC sing 484 n n 
O23 HO23 OLC sing 485 n n 
#
_atom_sites.entry_id                     6WMV 
_atom_sites.fract_transf_matrix[1][1]    0.012806 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000165 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016432 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011708 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LIP A 1 301 301 LIP LIP . 
D 3 NA A 1 302 302 NA NA . 
E 3 NA A 1 303 303 NA NA . 
F 3 NA A 1 304 304 NA NA . 
G 4 TCE A 1 305 305 TCE TCE . 
H 5 1PE A 1 306 306 1PE 1PE . 
I 6 OLC A 1 307 307 OLC OLC . 
J 6 OLC A 1 308 308 OLC OLC . 
K 6 OLC A 1 309 309 OLC OLC . 
L 7 8K6 A 1 310 310 8K6 8K6 . 
M 7 8K6 A 1 311 311 8K6 8K6 . 
N 7 8K6 A 1 312 312 8K6 8K6 . 
O 7 8K6 A 1 313 313 8K6 8K6 . 
P 8 GOL A 1 314 314 GOL GOL . 
Q 9 C5P C 1 301 301 C5P C5P . 
R 10 FLC C 1 302 302 FLC FLC . 
S 3 NA C 1 303 303 NA NA . 
T 5 1PE C 1 304 304 1PE 1PE . 
U 6 OLC C 1 305 305 OLC OLC . 
V 6 OLC C 1 306 306 OLC OLC . 
W 6 OLC C 1 307 307 OLC OLC . 
X 6 OLC C 1 308 308 OLC OLC . 
Y 7 8K6 C 1 309 309 8K6 8K6 . 
Z 7 8K6 C 1 310 310 8K6 8K6 . 
AA 8 GOL C 1 311 311 GOL GOL . 
BA 8 GOL C 1 312 312 GOL GOL . 
CA 11 HOH A 1 401 316 HOH HOH . 
CA 11 HOH A 2 402 315 HOH HOH . 
CA 11 HOH A 3 403 325 HOH HOH . 
CA 11 HOH A 4 404 322 HOH HOH . 
CA 11 HOH A 5 405 316 HOH HOH . 
CA 11 HOH A 6 406 319 HOH HOH . 
CA 11 HOH A 7 407 328 HOH HOH . 
CA 11 HOH A 8 408 315 HOH HOH . 
CA 11 HOH A 9 409 326 HOH HOH . 
CA 11 HOH A 10 410 324 HOH HOH . 
CA 11 HOH A 11 411 324 HOH HOH . 
CA 11 HOH A 12 412 323 HOH HOH . 
CA 11 HOH A 13 413 318 HOH HOH . 
CA 11 HOH A 14 414 317 HOH HOH . 
CA 11 HOH A 15 415 321 HOH HOH . 
CA 11 HOH A 16 416 320 HOH HOH . 
DA 11 HOH C 1 401 313 HOH HOH . 
DA 11 HOH C 2 402 321 HOH HOH . 
DA 11 HOH C 3 403 323 HOH HOH . 
DA 11 HOH C 4 404 317 HOH HOH . 
DA 11 HOH C 5 405 319 HOH HOH . 
DA 11 HOH C 6 406 314 HOH HOH . 
DA 11 HOH C 7 407 320 HOH HOH . 
DA 11 HOH C 8 408 327 HOH HOH . 
DA 11 HOH C 9 409 326 HOH HOH . 
DA 11 HOH C 10 410 318 HOH HOH . 
DA 11 HOH C 11 411 322 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . X 6 20.31 17.343 57.842 1 62.25 ? C24 OLC 308 C 1 
HETATM 2 C C6 OLC . . . X 6 17.428 21.109 48.761 1 37.15 ? C6 OLC 308 C 1 
HETATM 3 C C5 OLC . . . X 6 18.018 21.596 50.081 1 30.24 ? C5 OLC 308 C 1 
HETATM 4 C C4 OLC . . . X 6 18.12 20.464 51.098 1 39.05 ? C4 OLC 308 C 1 
HETATM 5 C C3 OLC . . . X 6 18.796 20.907 52.394 1 38.69 ? C3 OLC 308 C 1 
HETATM 6 C C2 OLC . . . X 6 18.87 19.734 53.367 1 51.86 ? C2 OLC 308 C 1 
HETATM 7 C C21 OLC . . . X 6 21.102 19.287 56.501 1 47.54 ? C21 OLC 308 C 1 
HETATM 8 C C1 OLC . . . X 6 19.688 20.081 54.591 1 58.05 ? C1 OLC 308 C 1 
HETATM 9 C C22 OLC . . . X 6 21.519 17.974 57.158 1 57.22 ? C22 OLC 308 C 1 
HETATM 10 O O19 OLC . . . X 6 19.972 21.238 54.851 1 58.15 ? O19 OLC 308 C 1 
HETATM 11 O O25 OLC . . . X 6 19.837 18.205 58.887 1 62.14 ? O25 OLC 308 C 1 
HETATM 12 O O23 OLC . . . X 6 22.047 17.074 56.171 1 57.33 ? O23 OLC 308 C 1 
HETATM 13 O O20 OLC . . . X 6 20.154 19.018 55.471 1 56.34 ? O20 OLC 308 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#