data_6WMV # _model_server_result.job_id 5SPGuZEQg6jltC_ZgTJFlA _model_server_result.datetime_utc '2024-11-27 22:18:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":310}' # _entry.id 6WMV # _exptl.entry_id 6WMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.494 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Octadecane _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.74 _cell.angle_gamma 90 _cell.entry_id 6WMV _cell.length_a 78.089 _cell.length_b 60.857 _cell.length_c 85.417 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 Y N N ? 7 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 169 A ASP 31 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A OD2 ASP 169 A ASP 31 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc3 A OG1 THR 172 A THR 34 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A O ASP 206 A ASP 68 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 A OD1 ASP 206 A ASP 68 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 A OD1 ASP 206 A ASP 68 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 A OD2 ASP 206 A ASP 68 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc8 A OD1 ASP 209 A ASP 71 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc9 A OD2 ASP 209 A ASP 71 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 A OG1 THR 220 A THR 82 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc11 A OD1 ASP 227 A ASP 89 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc12 A O ASP 227 A ASP 89 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc13 A OD1 ASP 227 A ASP 89 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc14 A OD1 ASP 231 A ASP 93 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc15 D NA NA . A NA 302 1_555 G O16 TCE . A TCE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc16 B OD1 ASP 206 C ASP 68 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc17 B OD2 ASP 206 C ASP 68 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc18 B OD1 ASP 227 C ASP 89 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc19 B OD1 ASP 231 C ASP 93 1_555 S NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C18 H38' _chem_comp.formula_weight 254.494 _chem_comp.id 8K6 _chem_comp.mon_nstd_flag . _chem_comp.name Octadecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-Octadecane # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 8K6 sing 38 n n C2 C3 8K6 sing 39 n n C3 C4 8K6 sing 40 n n C4 C5 8K6 sing 41 n n C5 C6 8K6 sing 42 n n C6 C7 8K6 sing 43 n n C7 C8 8K6 sing 44 n n C8 C9 8K6 sing 45 n n C9 C10 8K6 sing 46 n n C10 C11 8K6 sing 47 n n C11 C12 8K6 sing 48 n n C12 C13 8K6 sing 49 n n C13 C14 8K6 sing 50 n n C14 C15 8K6 sing 51 n n C15 C16 8K6 sing 52 n n C16 C17 8K6 sing 53 n n C17 C18 8K6 sing 54 n n C1 H11C 8K6 sing 55 n n C1 H12C 8K6 sing 56 n n C1 H13C 8K6 sing 57 n n C2 H21C 8K6 sing 58 n n C2 H22C 8K6 sing 59 n n C3 H31C 8K6 sing 60 n n C3 H32C 8K6 sing 61 n n C4 H41C 8K6 sing 62 n n C4 H42C 8K6 sing 63 n n C5 H51C 8K6 sing 64 n n C5 H52C 8K6 sing 65 n n C6 H61C 8K6 sing 66 n n C6 H62C 8K6 sing 67 n n C7 H71C 8K6 sing 68 n n C7 H72C 8K6 sing 69 n n C8 H81C 8K6 sing 70 n n C8 H82C 8K6 sing 71 n n C9 H91C 8K6 sing 72 n n C9 H92C 8K6 sing 73 n n C10 H101 8K6 sing 74 n n C10 H102 8K6 sing 75 n n C11 H111 8K6 sing 76 n n C11 H112 8K6 sing 77 n n C12 H121 8K6 sing 78 n n C12 H122 8K6 sing 79 n n C13 H131 8K6 sing 80 n n C13 H132 8K6 sing 81 n n C14 H141 8K6 sing 82 n n C14 H142 8K6 sing 83 n n C15 H151 8K6 sing 84 n n C15 H152 8K6 sing 85 n n C16 H161 8K6 sing 86 n n C16 H162 8K6 sing 87 n n C17 H171 8K6 sing 88 n n C17 H172 8K6 sing 89 n n C18 H181 8K6 sing 90 n n C18 H182 8K6 sing 91 n n C18 H183 8K6 sing 92 n n # _atom_sites.entry_id 6WMV _atom_sites.fract_transf_matrix[1][1] 0.012806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LIP A 1 301 301 LIP LIP . D 3 NA A 1 302 302 NA NA . E 3 NA A 1 303 303 NA NA . F 3 NA A 1 304 304 NA NA . G 4 TCE A 1 305 305 TCE TCE . H 5 1PE A 1 306 306 1PE 1PE . I 6 OLC A 1 307 307 OLC OLC . J 6 OLC A 1 308 308 OLC OLC . K 6 OLC A 1 309 309 OLC OLC . L 7 8K6 A 1 310 310 8K6 8K6 . M 7 8K6 A 1 311 311 8K6 8K6 . N 7 8K6 A 1 312 312 8K6 8K6 . O 7 8K6 A 1 313 313 8K6 8K6 . P 8 GOL A 1 314 314 GOL GOL . Q 9 C5P C 1 301 301 C5P C5P . R 10 FLC C 1 302 302 FLC FLC . S 3 NA C 1 303 303 NA NA . T 5 1PE C 1 304 304 1PE 1PE . U 6 OLC C 1 305 305 OLC OLC . V 6 OLC C 1 306 306 OLC OLC . W 6 OLC C 1 307 307 OLC OLC . X 6 OLC C 1 308 308 OLC OLC . Y 7 8K6 C 1 309 309 8K6 8K6 . Z 7 8K6 C 1 310 310 8K6 8K6 . AA 8 GOL C 1 311 311 GOL GOL . BA 8 GOL C 1 312 312 GOL GOL . CA 11 HOH A 1 401 316 HOH HOH . CA 11 HOH A 2 402 315 HOH HOH . CA 11 HOH A 3 403 325 HOH HOH . CA 11 HOH A 4 404 322 HOH HOH . CA 11 HOH A 5 405 316 HOH HOH . CA 11 HOH A 6 406 319 HOH HOH . CA 11 HOH A 7 407 328 HOH HOH . CA 11 HOH A 8 408 315 HOH HOH . CA 11 HOH A 9 409 326 HOH HOH . CA 11 HOH A 10 410 324 HOH HOH . CA 11 HOH A 11 411 324 HOH HOH . CA 11 HOH A 12 412 323 HOH HOH . CA 11 HOH A 13 413 318 HOH HOH . CA 11 HOH A 14 414 317 HOH HOH . CA 11 HOH A 15 415 321 HOH HOH . CA 11 HOH A 16 416 320 HOH HOH . DA 11 HOH C 1 401 313 HOH HOH . DA 11 HOH C 2 402 321 HOH HOH . DA 11 HOH C 3 403 323 HOH HOH . DA 11 HOH C 4 404 317 HOH HOH . DA 11 HOH C 5 405 319 HOH HOH . DA 11 HOH C 6 406 314 HOH HOH . DA 11 HOH C 7 407 320 HOH HOH . DA 11 HOH C 8 408 327 HOH HOH . DA 11 HOH C 9 409 326 HOH HOH . DA 11 HOH C 10 410 318 HOH HOH . DA 11 HOH C 11 411 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8K6 . . . Z 7 34.013 -8.638 31.893 1 45.5 ? C1 8K6 310 C 1 HETATM 2 C C2 8K6 . . . Z 7 33.168 -7.436 32.224 1 45.78 ? C2 8K6 310 C 1 HETATM 3 C C3 8K6 . . . Z 7 33.745 -6.555 33.293 1 42.02 ? C3 8K6 310 C 1 HETATM 4 C C4 8K6 . . . Z 7 33.286 -5.12 33.218 1 40.67 ? C4 8K6 310 C 1 HETATM 5 C C5 8K6 . . . Z 7 33.806 -4.251 34.337 1 38.26 ? C5 8K6 310 C 1 HETATM 6 C C6 8K6 . . . Z 7 33.198 -4.556 35.672 1 38.77 ? C6 8K6 310 C 1 HETATM 7 C C7 8K6 . . . Z 7 33.901 -3.915 36.829 1 38.13 ? C7 8K6 310 C 1 HETATM 8 C C8 8K6 . . . Z 7 33.206 -4.094 38.145 1 28.7 ? C8 8K6 310 C 1 HETATM 9 C C9 8K6 . . . Z 7 34.087 -4.662 39.212 1 35.74 ? C9 8K6 310 C 1 HETATM 10 C C10 8K6 . . . Z 7 33.552 -4.511 40.602 1 40.34 ? C10 8K6 310 C 1 HETATM 11 C C11 8K6 . . . Z 7 34.587 -4.733 41.687 1 43.2 ? C11 8K6 310 C 1 HETATM 12 C C12 8K6 . . . Z 7 34.024 -4.696 43.083 1 40.6 ? C12 8K6 310 C 1 HETATM 13 C C13 8K6 . . . Z 7 34.998 -4.248 44.136 1 46.75 ? C13 8K6 310 C 1 HETATM 14 C C14 8K6 . . . Z 7 34.367 -4.013 45.489 1 42.44 ? C14 8K6 310 C 1 HETATM 15 C C15 8K6 . . . Z 7 35.355 -3.927 46.617 1 42.57 ? C15 8K6 310 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #