data_6WNF # _model_server_result.job_id pr71uvPwiuZwDVgHIm9E1g _model_server_result.datetime_utc '2024-11-27 08:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6WNF # _exptl.entry_id 6WNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WNF _cell.length_a 60.089 _cell.length_b 63.849 _cell.length_c 72.827 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 6WNF _atom_sites.fract_transf_matrix[1][1] 0.016642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 201 9 ACT ACT . D 2 ACT A 1 202 10 ACT ACT . E 3 GOL A 1 203 2 GOL GOL . F 3 GOL A 1 204 4 GOL GOL . G 3 GOL A 1 205 6 GOL GOL . H 3 GOL A 1 206 7 GOL GOL . I 2 ACT B 1 201 2 ACT ACT . J 3 GOL B 1 202 3 GOL GOL . K 3 GOL B 1 203 5 GOL GOL . L 4 HOH A 1 301 157 HOH HOH . L 4 HOH A 2 302 53 HOH HOH . L 4 HOH A 3 303 159 HOH HOH . L 4 HOH A 4 304 75 HOH HOH . L 4 HOH A 5 305 81 HOH HOH . L 4 HOH A 6 306 143 HOH HOH . L 4 HOH A 7 307 83 HOH HOH . L 4 HOH A 8 308 86 HOH HOH . L 4 HOH A 9 309 109 HOH HOH . L 4 HOH A 10 310 111 HOH HOH . L 4 HOH A 11 311 118 HOH HOH . L 4 HOH A 12 312 11 HOH HOH . L 4 HOH A 13 313 36 HOH HOH . L 4 HOH A 14 314 4 HOH HOH . L 4 HOH A 15 315 9 HOH HOH . L 4 HOH A 16 316 120 HOH HOH . L 4 HOH A 17 317 40 HOH HOH . L 4 HOH A 18 318 160 HOH HOH . L 4 HOH A 19 319 80 HOH HOH . L 4 HOH A 20 320 134 HOH HOH . L 4 HOH A 21 321 113 HOH HOH . L 4 HOH A 22 322 54 HOH HOH . L 4 HOH A 23 323 38 HOH HOH . L 4 HOH A 24 324 97 HOH HOH . L 4 HOH A 25 325 88 HOH HOH . L 4 HOH A 26 326 137 HOH HOH . L 4 HOH A 27 327 28 HOH HOH . L 4 HOH A 28 328 56 HOH HOH . L 4 HOH A 29 329 21 HOH HOH . L 4 HOH A 30 330 26 HOH HOH . L 4 HOH A 31 331 2 HOH HOH . L 4 HOH A 32 332 115 HOH HOH . L 4 HOH A 33 333 20 HOH HOH . L 4 HOH A 34 334 7 HOH HOH . L 4 HOH A 35 335 161 HOH HOH . L 4 HOH A 36 336 13 HOH HOH . L 4 HOH A 37 337 19 HOH HOH . L 4 HOH A 38 338 18 HOH HOH . L 4 HOH A 39 339 33 HOH HOH . L 4 HOH A 40 340 108 HOH HOH . L 4 HOH A 41 341 55 HOH HOH . L 4 HOH A 42 342 150 HOH HOH . L 4 HOH A 43 343 35 HOH HOH . L 4 HOH A 44 344 110 HOH HOH . L 4 HOH A 45 345 89 HOH HOH . L 4 HOH A 46 346 126 HOH HOH . L 4 HOH A 47 347 106 HOH HOH . L 4 HOH A 48 348 156 HOH HOH . L 4 HOH A 49 349 138 HOH HOH . L 4 HOH A 50 350 92 HOH HOH . L 4 HOH A 51 351 151 HOH HOH . L 4 HOH A 52 352 114 HOH HOH . L 4 HOH A 53 353 79 HOH HOH . L 4 HOH A 54 354 43 HOH HOH . L 4 HOH A 55 355 155 HOH HOH . L 4 HOH A 56 356 37 HOH HOH . L 4 HOH A 57 357 119 HOH HOH . L 4 HOH A 58 358 95 HOH HOH . L 4 HOH A 59 359 85 HOH HOH . L 4 HOH A 60 360 50 HOH HOH . L 4 HOH A 61 361 131 HOH HOH . L 4 HOH A 62 362 52 HOH HOH . L 4 HOH A 63 363 117 HOH HOH . L 4 HOH A 64 364 58 HOH HOH . L 4 HOH A 65 365 130 HOH HOH . M 4 HOH B 1 301 3 HOH HOH . M 4 HOH B 2 302 152 HOH HOH . M 4 HOH B 3 303 163 HOH HOH . M 4 HOH B 4 304 29 HOH HOH . M 4 HOH B 5 305 91 HOH HOH . M 4 HOH B 6 306 39 HOH HOH . M 4 HOH B 7 307 98 HOH HOH . M 4 HOH B 8 308 146 HOH HOH . M 4 HOH B 9 309 68 HOH HOH . M 4 HOH B 10 310 142 HOH HOH . M 4 HOH B 11 311 72 HOH HOH . M 4 HOH B 12 312 45 HOH HOH . M 4 HOH B 13 313 87 HOH HOH . M 4 HOH B 14 314 73 HOH HOH . M 4 HOH B 15 315 25 HOH HOH . M 4 HOH B 16 316 32 HOH HOH . M 4 HOH B 17 317 15 HOH HOH . M 4 HOH B 18 318 6 HOH HOH . M 4 HOH B 19 319 102 HOH HOH . M 4 HOH B 20 320 164 HOH HOH . M 4 HOH B 21 321 69 HOH HOH . M 4 HOH B 22 322 162 HOH HOH . M 4 HOH B 23 323 100 HOH HOH . M 4 HOH B 24 324 67 HOH HOH . M 4 HOH B 25 325 66 HOH HOH . M 4 HOH B 26 326 8 HOH HOH . M 4 HOH B 27 327 132 HOH HOH . M 4 HOH B 28 328 96 HOH HOH . M 4 HOH B 29 329 12 HOH HOH . M 4 HOH B 30 330 17 HOH HOH . M 4 HOH B 31 331 22 HOH HOH . M 4 HOH B 32 332 149 HOH HOH . M 4 HOH B 33 333 82 HOH HOH . M 4 HOH B 34 334 153 HOH HOH . M 4 HOH B 35 335 128 HOH HOH . M 4 HOH B 36 336 103 HOH HOH . M 4 HOH B 37 337 90 HOH HOH . M 4 HOH B 38 338 125 HOH HOH . M 4 HOH B 39 339 101 HOH HOH . M 4 HOH B 40 340 74 HOH HOH . M 4 HOH B 41 341 31 HOH HOH . M 4 HOH B 42 342 122 HOH HOH . M 4 HOH B 43 343 57 HOH HOH . M 4 HOH B 44 344 16 HOH HOH . M 4 HOH B 45 345 136 HOH HOH . M 4 HOH B 46 346 23 HOH HOH . M 4 HOH B 47 347 10 HOH HOH . M 4 HOH B 48 348 46 HOH HOH . M 4 HOH B 49 349 34 HOH HOH . M 4 HOH B 50 350 148 HOH HOH . M 4 HOH B 51 351 44 HOH HOH . M 4 HOH B 52 352 123 HOH HOH . M 4 HOH B 53 353 49 HOH HOH . M 4 HOH B 54 354 99 HOH HOH . M 4 HOH B 55 355 135 HOH HOH . M 4 HOH B 56 356 129 HOH HOH . M 4 HOH B 57 357 145 HOH HOH . M 4 HOH B 58 358 147 HOH HOH . M 4 HOH B 59 359 76 HOH HOH . M 4 HOH B 60 360 139 HOH HOH . M 4 HOH B 61 361 141 HOH HOH . M 4 HOH B 62 362 51 HOH HOH . M 4 HOH B 63 363 158 HOH HOH . M 4 HOH B 64 364 124 HOH HOH . M 4 HOH B 65 365 140 HOH HOH . M 4 HOH B 66 366 127 HOH HOH . M 4 HOH B 67 367 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -28.083 -65.365 -0.508 1 65.78 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . E 3 -27.48 -66.006 0.578 1 69.45 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . E 3 -26.953 -64.784 -1.386 1 57.32 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . E 3 -26.455 -63.605 -0.863 1 56.99 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . E 3 -27.593 -64.571 -2.769 1 51.65 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . E 3 -27.878 -65.824 -3.305 1 68.79 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #