data_6WNF
#
_model_server_result.job_id            uAZJ81TPTV9R1SZV_fS1Tw 
_model_server_result.datetime_utc      '2024-11-07 08:40:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wnf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    6WNF 
#
_exptl.entry_id    6WNF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WNF 
_cell.length_a            60.089 
_cell.length_b            63.849 
_cell.length_c            72.827 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WNF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     6WNF 
_atom_sites.fract_transf_matrix[1][1]    0.016642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015662 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 201 9 ACT ACT . 
D 2 ACT A 1 202 10 ACT ACT . 
E 3 GOL A 1 203 2 GOL GOL . 
F 3 GOL A 1 204 4 GOL GOL . 
G 3 GOL A 1 205 6 GOL GOL . 
H 3 GOL A 1 206 7 GOL GOL . 
I 2 ACT B 1 201 2 ACT ACT . 
J 3 GOL B 1 202 3 GOL GOL . 
K 3 GOL B 1 203 5 GOL GOL . 
L 4 HOH A 1 301 157 HOH HOH . 
L 4 HOH A 2 302 53 HOH HOH . 
L 4 HOH A 3 303 159 HOH HOH . 
L 4 HOH A 4 304 75 HOH HOH . 
L 4 HOH A 5 305 81 HOH HOH . 
L 4 HOH A 6 306 143 HOH HOH . 
L 4 HOH A 7 307 83 HOH HOH . 
L 4 HOH A 8 308 86 HOH HOH . 
L 4 HOH A 9 309 109 HOH HOH . 
L 4 HOH A 10 310 111 HOH HOH . 
L 4 HOH A 11 311 118 HOH HOH . 
L 4 HOH A 12 312 11 HOH HOH . 
L 4 HOH A 13 313 36 HOH HOH . 
L 4 HOH A 14 314 4 HOH HOH . 
L 4 HOH A 15 315 9 HOH HOH . 
L 4 HOH A 16 316 120 HOH HOH . 
L 4 HOH A 17 317 40 HOH HOH . 
L 4 HOH A 18 318 160 HOH HOH . 
L 4 HOH A 19 319 80 HOH HOH . 
L 4 HOH A 20 320 134 HOH HOH . 
L 4 HOH A 21 321 113 HOH HOH . 
L 4 HOH A 22 322 54 HOH HOH . 
L 4 HOH A 23 323 38 HOH HOH . 
L 4 HOH A 24 324 97 HOH HOH . 
L 4 HOH A 25 325 88 HOH HOH . 
L 4 HOH A 26 326 137 HOH HOH . 
L 4 HOH A 27 327 28 HOH HOH . 
L 4 HOH A 28 328 56 HOH HOH . 
L 4 HOH A 29 329 21 HOH HOH . 
L 4 HOH A 30 330 26 HOH HOH . 
L 4 HOH A 31 331 2 HOH HOH . 
L 4 HOH A 32 332 115 HOH HOH . 
L 4 HOH A 33 333 20 HOH HOH . 
L 4 HOH A 34 334 7 HOH HOH . 
L 4 HOH A 35 335 161 HOH HOH . 
L 4 HOH A 36 336 13 HOH HOH . 
L 4 HOH A 37 337 19 HOH HOH . 
L 4 HOH A 38 338 18 HOH HOH . 
L 4 HOH A 39 339 33 HOH HOH . 
L 4 HOH A 40 340 108 HOH HOH . 
L 4 HOH A 41 341 55 HOH HOH . 
L 4 HOH A 42 342 150 HOH HOH . 
L 4 HOH A 43 343 35 HOH HOH . 
L 4 HOH A 44 344 110 HOH HOH . 
L 4 HOH A 45 345 89 HOH HOH . 
L 4 HOH A 46 346 126 HOH HOH . 
L 4 HOH A 47 347 106 HOH HOH . 
L 4 HOH A 48 348 156 HOH HOH . 
L 4 HOH A 49 349 138 HOH HOH . 
L 4 HOH A 50 350 92 HOH HOH . 
L 4 HOH A 51 351 151 HOH HOH . 
L 4 HOH A 52 352 114 HOH HOH . 
L 4 HOH A 53 353 79 HOH HOH . 
L 4 HOH A 54 354 43 HOH HOH . 
L 4 HOH A 55 355 155 HOH HOH . 
L 4 HOH A 56 356 37 HOH HOH . 
L 4 HOH A 57 357 119 HOH HOH . 
L 4 HOH A 58 358 95 HOH HOH . 
L 4 HOH A 59 359 85 HOH HOH . 
L 4 HOH A 60 360 50 HOH HOH . 
L 4 HOH A 61 361 131 HOH HOH . 
L 4 HOH A 62 362 52 HOH HOH . 
L 4 HOH A 63 363 117 HOH HOH . 
L 4 HOH A 64 364 58 HOH HOH . 
L 4 HOH A 65 365 130 HOH HOH . 
M 4 HOH B 1 301 3 HOH HOH . 
M 4 HOH B 2 302 152 HOH HOH . 
M 4 HOH B 3 303 163 HOH HOH . 
M 4 HOH B 4 304 29 HOH HOH . 
M 4 HOH B 5 305 91 HOH HOH . 
M 4 HOH B 6 306 39 HOH HOH . 
M 4 HOH B 7 307 98 HOH HOH . 
M 4 HOH B 8 308 146 HOH HOH . 
M 4 HOH B 9 309 68 HOH HOH . 
M 4 HOH B 10 310 142 HOH HOH . 
M 4 HOH B 11 311 72 HOH HOH . 
M 4 HOH B 12 312 45 HOH HOH . 
M 4 HOH B 13 313 87 HOH HOH . 
M 4 HOH B 14 314 73 HOH HOH . 
M 4 HOH B 15 315 25 HOH HOH . 
M 4 HOH B 16 316 32 HOH HOH . 
M 4 HOH B 17 317 15 HOH HOH . 
M 4 HOH B 18 318 6 HOH HOH . 
M 4 HOH B 19 319 102 HOH HOH . 
M 4 HOH B 20 320 164 HOH HOH . 
M 4 HOH B 21 321 69 HOH HOH . 
M 4 HOH B 22 322 162 HOH HOH . 
M 4 HOH B 23 323 100 HOH HOH . 
M 4 HOH B 24 324 67 HOH HOH . 
M 4 HOH B 25 325 66 HOH HOH . 
M 4 HOH B 26 326 8 HOH HOH . 
M 4 HOH B 27 327 132 HOH HOH . 
M 4 HOH B 28 328 96 HOH HOH . 
M 4 HOH B 29 329 12 HOH HOH . 
M 4 HOH B 30 330 17 HOH HOH . 
M 4 HOH B 31 331 22 HOH HOH . 
M 4 HOH B 32 332 149 HOH HOH . 
M 4 HOH B 33 333 82 HOH HOH . 
M 4 HOH B 34 334 153 HOH HOH . 
M 4 HOH B 35 335 128 HOH HOH . 
M 4 HOH B 36 336 103 HOH HOH . 
M 4 HOH B 37 337 90 HOH HOH . 
M 4 HOH B 38 338 125 HOH HOH . 
M 4 HOH B 39 339 101 HOH HOH . 
M 4 HOH B 40 340 74 HOH HOH . 
M 4 HOH B 41 341 31 HOH HOH . 
M 4 HOH B 42 342 122 HOH HOH . 
M 4 HOH B 43 343 57 HOH HOH . 
M 4 HOH B 44 344 16 HOH HOH . 
M 4 HOH B 45 345 136 HOH HOH . 
M 4 HOH B 46 346 23 HOH HOH . 
M 4 HOH B 47 347 10 HOH HOH . 
M 4 HOH B 48 348 46 HOH HOH . 
M 4 HOH B 49 349 34 HOH HOH . 
M 4 HOH B 50 350 148 HOH HOH . 
M 4 HOH B 51 351 44 HOH HOH . 
M 4 HOH B 52 352 123 HOH HOH . 
M 4 HOH B 53 353 49 HOH HOH . 
M 4 HOH B 54 354 99 HOH HOH . 
M 4 HOH B 55 355 135 HOH HOH . 
M 4 HOH B 56 356 129 HOH HOH . 
M 4 HOH B 57 357 145 HOH HOH . 
M 4 HOH B 58 358 147 HOH HOH . 
M 4 HOH B 59 359 76 HOH HOH . 
M 4 HOH B 60 360 139 HOH HOH . 
M 4 HOH B 61 361 141 HOH HOH . 
M 4 HOH B 62 362 51 HOH HOH . 
M 4 HOH B 63 363 158 HOH HOH . 
M 4 HOH B 64 364 124 HOH HOH . 
M 4 HOH B 65 365 140 HOH HOH . 
M 4 HOH B 66 366 127 HOH HOH . 
M 4 HOH B 67 367 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -60.656 -21.056 20.081 1 81.52 ? C1 GOL 205 A 1 
HETATM 2 O O1 GOL . . . G 3 -60.594 -19.68 19.897 1 84.58 ? O1 GOL 205 A 1 
HETATM 3 C C2 GOL . . . G 3 -59.651 -21.412 21.162 1 81.48 ? C2 GOL 205 A 1 
HETATM 4 O O2 GOL . . . G 3 -59.625 -20.477 22.184 1 86.3 ? O2 GOL 205 A 1 
HETATM 5 C C3 GOL . . . G 3 -58.283 -21.608 20.462 1 78.09 ? C3 GOL 205 A 1 
HETATM 6 O O3 GOL . . . G 3 -57.675 -20.36 20.359 1 76.65 ? O3 GOL 205 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#