data_6WNN # _model_server_result.job_id hsbMpts7U-kMScx3Ts_pAg _model_server_result.datetime_utc '2025-07-17 06:23:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6WNN # _exptl.entry_id 6WNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.314 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.15 _cell.angle_beta 106.04 _cell.angle_gamma 99.23 _cell.entry_id 6WNN _cell.length_a 58.3 _cell.length_b 60.54 _cell.length_c 62.72 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H22 N3 O7 P' _chem_comp.formula_weight 375.314 _chem_comp.id LLP _chem_comp.mon_nstd_flag n _chem_comp.name '(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms "N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 LLP doub 192 n y N1 C6 LLP sing 193 n y C2 C2' LLP sing 194 n n C2 C3 LLP sing 195 n y C3 O3 LLP sing 196 n n C3 C4 LLP doub 197 n y C4 C4' LLP sing 198 n n C4 C5 LLP sing 199 n y C4' NZ LLP doub 200 n n C5 C6 LLP doub 201 n y C5 C5' LLP sing 202 n n C5' OP4 LLP sing 203 n n OP4 P LLP sing 204 n n P OP1 LLP doub 205 n n P OP2 LLP sing 206 n n P OP3 LLP sing 207 n n N CA LLP sing 208 n n CA CB LLP sing 209 n n CA C LLP sing 210 n n CB CG LLP sing 211 n n CG CD LLP sing 212 n n CD CE LLP sing 213 n n CE NZ LLP sing 214 n n C O LLP doub 215 n n C OXT LLP sing 216 n n C2' "H2'1" LLP sing 217 n n C2' "H2'2" LLP sing 218 n n C2' "H2'3" LLP sing 219 n n O3 HO3 LLP sing 220 n n C4' "H4'1" LLP sing 221 n n C6 H6 LLP sing 222 n n C5' "H5'1" LLP sing 223 n n C5' "H5'2" LLP sing 224 n n OP2 HOP2 LLP sing 225 n n OP3 HOP3 LLP sing 226 n n N H LLP sing 227 n n N H2 LLP sing 228 n n CA HA LLP sing 229 n n CB HB2 LLP sing 230 n n CB HB3 LLP sing 231 n n CG HG2 LLP sing 232 n n CG HG3 LLP sing 233 n n CD HD2 LLP sing 234 n n CD HD3 LLP sing 235 n n CE HE2 LLP sing 236 n n CE HE3 LLP sing 237 n n OXT HXT LLP sing 238 n n # _atom_sites.entry_id 6WNN _atom_sites.fract_transf_matrix[1][1] 0.017153 _atom_sites.fract_transf_matrix[1][2] 0.002788 _atom_sites.fract_transf_matrix[1][3] 0.005445 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016735 _atom_sites.fract_transf_matrix[2][3] 0.002705 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LLP A 1 501 1 LLP LLP . D 3 PMP B 1 501 1 PMP PMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LLP . . . C 2 19.907 26.56 23.397 1 68.14 ? N1 LLP 501 A 1 HETATM 2 C C2 LLP . . . C 2 19.55 25.695 22.436 1 68.84 ? C2 LLP 501 A 1 HETATM 3 C C2' LLP . . . C 2 18.36 24.795 22.64 1 66.41 ? C2' LLP 501 A 1 HETATM 4 C C3 LLP . . . C 2 20.324 25.62 21.171 1 64.86 ? C3 LLP 501 A 1 HETATM 5 O O3 LLP . . . C 2 19.98 24.749 20.182 1 58.49 ? O3 LLP 501 A 1 HETATM 6 C C4 LLP . . . C 2 21.484 26.527 21.025 1 63.74 ? C4 LLP 501 A 1 HETATM 7 C C4' LLP . . . C 2 22.318 26.528 19.802 1 61.82 ? C4' LLP 501 A 1 HETATM 8 C C5 LLP . . . C 2 21.772 27.435 22.161 1 63.05 ? C5 LLP 501 A 1 HETATM 9 C C6 LLP . . . C 2 20.956 27.394 23.29 1 65.68 ? C6 LLP 501 A 1 HETATM 10 C C5' LLP . . . C 2 22.938 28.394 22.096 1 65.9 ? C5' LLP 501 A 1 HETATM 11 O OP4 LLP . . . C 2 22.537 29.664 22.607 1 66.15 ? OP4 LLP 501 A 1 HETATM 12 P P LLP . . . C 2 23.587 30.883 22.682 1 59.82 ? P LLP 501 A 1 HETATM 13 O OP1 LLP . . . C 2 22.839 32.149 23.023 1 63.85 ? OP1 LLP 501 A 1 HETATM 14 O OP2 LLP . . . C 2 24.264 31.025 21.34 1 66.75 ? OP2 LLP 501 A 1 HETATM 15 O OP3 LLP . . . C 2 24.61 30.58 23.75 1 57.25 ? OP3 LLP 501 A 1 HETATM 16 N N LLP . . . C 2 27.029 23.673 18.65 1 65.19 ? N LLP 501 A 1 HETATM 17 C CA LLP . . . C 2 25.941 23.549 17.644 1 64.84 ? CA LLP 501 A 1 HETATM 18 C CB LLP . . . C 2 24.958 24.704 17.794 1 64.42 ? CB LLP 501 A 1 HETATM 19 C CG LLP . . . C 2 25.674 26.046 17.695 1 66.04 ? CG LLP 501 A 1 HETATM 20 C CD LLP . . . C 2 25.115 27.038 18.708 1 65.93 ? CD LLP 501 A 1 HETATM 21 C CE LLP . . . C 2 23.759 27.57 18.261 1 64.28 ? CE LLP 501 A 1 HETATM 22 N NZ LLP . . . C 2 22.939 27.57 19.464 1 63.51 ? NZ LLP 501 A 1 HETATM 23 C C LLP . . . C 2 26.482 23.531 16.245 1 63 ? C LLP 501 A 1 HETATM 24 O O LLP . . . C 2 25.733 23.892 15.311 1 56.26 ? O LLP 501 A 1 HETATM 25 O OXT LLP . . . C 2 27.66 23.155 16.066 1 63.55 ? OXT LLP 501 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #