data_6WO9 # _model_server_result.job_id CVNtzY8QMhn5fpcCSbFt1w _model_server_result.datetime_utc '2024-11-13 16:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WO9 # _exptl.entry_id 6WO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 740.015 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WO9 _cell.length_a 47.291 _cell.length_b 59.777 _cell.length_c 62.463 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 71 A GLY 50 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A OE2 GLU 87 A GLU 66 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc3 A OE1 GLU 87 A GLU 66 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 A OE1 GLU 91 A GLU 70 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 A OE1 GLU 91 A GLU 70 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 B O27 O81 . A O81 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc7 B O36 O81 . A O81 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 B O21 O81 . A O81 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 B O27 O81 . A O81 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc10 B O37 O81 . A O81 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc11 C MG MG . A MG 402 1_555 H O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc12 D MG MG . A MG 403 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc13 D MG MG . A MG 403 1_555 H O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc14 E MG MG . A MG 404 1_555 H O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc15 E MG MG . A MG 404 1_555 H O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? # _chem_comp.formula 'C6 H19 O27 P7' _chem_comp.formula_weight 740.015 _chem_comp.id O81 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 P5 O81 doub 237 n n O44 P4 O81 doub 238 n n P5 O45 O81 sing 239 n n P5 O25 O81 sing 240 n n P5 O15 O81 sing 241 n n P4 O24 O81 sing 242 n n P4 O34 O81 sing 243 n n P4 O14 O81 sing 244 n n O15 C5 O81 sing 245 n n O14 C4 O81 sing 246 n n O36 P6 O81 doub 247 n n C5 C4 O81 sing 248 n n C5 C6 O81 sing 249 n n C4 C3 O81 sing 250 n n O16 P6 O81 sing 251 n n O16 C6 O81 sing 252 n n O43 P3 O81 doub 253 n n P6 O26 O81 sing 254 n n P6 O46 O81 sing 255 n n C6 C1 O81 sing 256 n n C3 O13 O81 sing 257 n n C3 C2 O81 sing 258 n n O13 P3 O81 sing 259 n n P3 O23 O81 sing 260 n n P3 O33 O81 sing 261 n n C1 C2 O81 sing 262 n n C1 O11 O81 sing 263 n n C2 O12 O81 sing 264 n n O12 P2 O81 sing 265 n n O21 P1 O81 doub 266 n n O11 P1 O81 sing 267 n n O42 P2 O81 doub 268 n n P2 O32 O81 sing 269 n n P2 O22 O81 sing 270 n n P1 O31 O81 sing 271 n n P1 O41 O81 sing 272 n n O47 P7 O81 doub 273 n n O41 P7 O81 sing 274 n n O37 P7 O81 sing 275 n n P7 O27 O81 sing 276 n n O27 H1 O81 sing 277 n n C5 H2 O81 sing 278 n n C6 H3 O81 sing 279 n n C4 H4 O81 sing 280 n n C3 H5 O81 sing 281 n n C2 H6 O81 sing 282 n n C1 H7 O81 sing 283 n n O32 H8 O81 sing 284 n n O22 H9 O81 sing 285 n n O33 H10 O81 sing 286 n n O23 H11 O81 sing 287 n n O34 H12 O81 sing 288 n n O24 H13 O81 sing 289 n n O45 H14 O81 sing 290 n n O25 H15 O81 sing 291 n n O46 H16 O81 sing 292 n n O26 H17 O81 sing 293 n n O31 H18 O81 sing 294 n n O37 H19 O81 sing 295 n n # _atom_sites.entry_id 6WO9 _atom_sites.fract_transf_matrix[1][1] 0.021146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O81 A 1 401 401 O81 O81 . C 3 MG A 1 402 501 MG MG . D 3 MG A 1 403 502 MG MG . E 3 MG A 1 404 503 MG MG . F 4 CL A 1 405 601 CL CL . G 5 SO4 A 1 406 701 SO4 SO4 . H 6 HOH A 1 501 36 HOH HOH . H 6 HOH A 2 502 89 HOH HOH . H 6 HOH A 3 503 84 HOH HOH . H 6 HOH A 4 504 87 HOH HOH . H 6 HOH A 5 505 40 HOH HOH . H 6 HOH A 6 506 65 HOH HOH . H 6 HOH A 7 507 25 HOH HOH . H 6 HOH A 8 508 54 HOH HOH . H 6 HOH A 9 509 62 HOH HOH . H 6 HOH A 10 510 53 HOH HOH . H 6 HOH A 11 511 46 HOH HOH . H 6 HOH A 12 512 22 HOH HOH . H 6 HOH A 13 513 86 HOH HOH . H 6 HOH A 14 514 55 HOH HOH . H 6 HOH A 15 515 69 HOH HOH . H 6 HOH A 16 516 83 HOH HOH . H 6 HOH A 17 517 32 HOH HOH . H 6 HOH A 18 518 45 HOH HOH . H 6 HOH A 19 519 13 HOH HOH . H 6 HOH A 20 520 5 HOH HOH . H 6 HOH A 21 521 23 HOH HOH . H 6 HOH A 22 522 78 HOH HOH . H 6 HOH A 23 523 35 HOH HOH . H 6 HOH A 24 524 41 HOH HOH . H 6 HOH A 25 525 1 HOH HOH . H 6 HOH A 26 526 3 HOH HOH . H 6 HOH A 27 527 10 HOH HOH . H 6 HOH A 28 528 30 HOH HOH . H 6 HOH A 29 529 6 HOH HOH . H 6 HOH A 30 530 75 HOH HOH . H 6 HOH A 31 531 19 HOH HOH . H 6 HOH A 32 532 21 HOH HOH . H 6 HOH A 33 533 18 HOH HOH . H 6 HOH A 34 534 2 HOH HOH . H 6 HOH A 35 535 76 HOH HOH . H 6 HOH A 36 536 48 HOH HOH . H 6 HOH A 37 537 58 HOH HOH . H 6 HOH A 38 538 29 HOH HOH . H 6 HOH A 39 539 39 HOH HOH . H 6 HOH A 40 540 74 HOH HOH . H 6 HOH A 41 541 51 HOH HOH . H 6 HOH A 42 542 4 HOH HOH . H 6 HOH A 43 543 14 HOH HOH . H 6 HOH A 44 544 12 HOH HOH . H 6 HOH A 45 545 50 HOH HOH . H 6 HOH A 46 546 43 HOH HOH . H 6 HOH A 47 547 60 HOH HOH . H 6 HOH A 48 548 20 HOH HOH . H 6 HOH A 49 549 15 HOH HOH . H 6 HOH A 50 550 11 HOH HOH . H 6 HOH A 51 551 42 HOH HOH . H 6 HOH A 52 552 26 HOH HOH . H 6 HOH A 53 553 24 HOH HOH . H 6 HOH A 54 554 85 HOH HOH . H 6 HOH A 55 555 16 HOH HOH . H 6 HOH A 56 556 38 HOH HOH . H 6 HOH A 57 557 8 HOH HOH . H 6 HOH A 58 558 63 HOH HOH . H 6 HOH A 59 559 49 HOH HOH . H 6 HOH A 60 560 7 HOH HOH . H 6 HOH A 61 561 88 HOH HOH . H 6 HOH A 62 562 34 HOH HOH . H 6 HOH A 63 563 27 HOH HOH . H 6 HOH A 64 564 68 HOH HOH . H 6 HOH A 65 565 47 HOH HOH . H 6 HOH A 66 566 31 HOH HOH . H 6 HOH A 67 567 44 HOH HOH . H 6 HOH A 68 568 61 HOH HOH . H 6 HOH A 69 569 28 HOH HOH . H 6 HOH A 70 570 17 HOH HOH . H 6 HOH A 71 571 79 HOH HOH . H 6 HOH A 72 572 56 HOH HOH . H 6 HOH A 73 573 77 HOH HOH . H 6 HOH A 74 574 52 HOH HOH . H 6 HOH A 75 575 81 HOH HOH . H 6 HOH A 76 576 66 HOH HOH . H 6 HOH A 77 577 57 HOH HOH . H 6 HOH A 78 578 9 HOH HOH . H 6 HOH A 79 579 73 HOH HOH . H 6 HOH A 80 580 80 HOH HOH . H 6 HOH A 81 581 71 HOH HOH . H 6 HOH A 82 582 82 HOH HOH . H 6 HOH A 83 583 59 HOH HOH . H 6 HOH A 84 584 70 HOH HOH . H 6 HOH A 85 585 37 HOH HOH . H 6 HOH A 86 586 72 HOH HOH . H 6 HOH A 87 587 67 HOH HOH . H 6 HOH A 88 588 33 HOH HOH . H 6 HOH A 89 589 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O27 O81 . . . B 2 13.421 8.865 17.999 1 44.15 ? O27 O81 401 A 1 HETATM 2 C C5 O81 . . . B 2 16.467 5.117 13.304 1 48.82 ? C5 O81 401 A 1 HETATM 3 C C6 O81 . . . B 2 16.219 5.966 14.508 1 48.28 ? C6 O81 401 A 1 HETATM 4 C C4 O81 . . . B 2 17.644 4.199 13.542 1 51.65 ? C4 O81 401 A 1 HETATM 5 C C3 O81 . . . B 2 17.405 3.325 14.815 1 50.6 ? C3 O81 401 A 1 HETATM 6 C C2 O81 . . . B 2 17.111 4.179 16.009 1 48.28 ? C2 O81 401 A 1 HETATM 7 C C1 O81 . . . B 2 15.888 4.989 15.649 1 48.54 ? C1 O81 401 A 1 HETATM 8 O O32 O81 . . . B 2 18.927 3.693 18.292 1 70.98 ? O32 O81 401 A 1 HETATM 9 P P2 O81 . . . B 2 18.94 5.122 17.815 1 62.75 ? P2 O81 401 A 1 HETATM 10 O O42 O81 . . . B 2 20.351 5.741 17.414 1 56.77 ? O42 O81 401 A 1 HETATM 11 O O22 O81 . . . B 2 17.987 6.104 18.686 1 56.42 ? O22 O81 401 A 1 HETATM 12 O O12 O81 . . . B 2 18.202 5.056 16.34 1 53.76 ? O12 O81 401 A 1 HETATM 13 O O13 O81 . . . B 2 18.503 2.559 15.149 1 48.21 ? O13 O81 401 A 1 HETATM 14 P P3 O81 . . . B 2 18.31 1.06 15.755 1 53.75 ? P3 O81 401 A 1 HETATM 15 O O33 O81 . . . B 2 17.423 1.219 17.088 1 46.46 ? O33 O81 401 A 1 HETATM 16 O O43 O81 . . . B 2 19.631 0.357 15.871 1 52.74 ? O43 O81 401 A 1 HETATM 17 O O23 O81 . . . B 2 17.491 0.374 14.555 1 44.02 ? O23 O81 401 A 1 HETATM 18 O O14 O81 . . . B 2 17.725 3.382 12.368 1 64.81 ? O14 O81 401 A 1 HETATM 19 P P4 O81 . . . B 2 18.962 3.588 11.283 1 67.34 ? P4 O81 401 A 1 HETATM 20 O O34 O81 . . . B 2 19.327 5.139 11.106 1 69.44 ? O34 O81 401 A 1 HETATM 21 O O44 O81 . . . B 2 18.566 2.792 10.077 1 70.48 ? O44 O81 401 A 1 HETATM 22 O O24 O81 . . . B 2 20.186 2.936 12.083 1 56.45 ? O24 O81 401 A 1 HETATM 23 O O15 O81 . . . B 2 16.75 5.92 12.175 1 49.89 ? O15 O81 401 A 1 HETATM 24 P P5 O81 . . . B 2 15.718 6.236 10.984 1 43.73 ? P5 O81 401 A 1 HETATM 25 O O35 O81 . . . B 2 14.456 5.315 11.204 1 38.41 ? O35 O81 401 A 1 HETATM 26 O O45 O81 . . . B 2 16.563 5.932 9.655 1 52.58 ? O45 O81 401 A 1 HETATM 27 O O25 O81 . . . B 2 15.493 7.7 11.274 1 40.18 ? O25 O81 401 A 1 HETATM 28 O O16 O81 . . . B 2 15.095 6.858 14.245 1 53.17 ? O16 O81 401 A 1 HETATM 29 P P6 O81 . . . B 2 15.267 8.52 14.206 1 51.6 ? P6 O81 401 A 1 HETATM 30 O O36 O81 . . . B 2 14.542 9.049 15.551 1 47.82 ? O36 O81 401 A 1 HETATM 31 O O46 O81 . . . B 2 14.732 9.112 12.949 1 48.13 ? O46 O81 401 A 1 HETATM 32 O O26 O81 . . . B 2 16.863 8.898 14.413 1 49.26 ? O26 O81 401 A 1 HETATM 33 O O11 O81 . . . B 2 15.6 5.674 16.805 1 46.22 ? O11 O81 401 A 1 HETATM 34 P P1 O81 . . . B 2 14.211 5.623 17.466 1 40.19 ? P1 O81 401 A 1 HETATM 35 O O21 O81 . . . B 2 13.139 6.25 16.458 1 35.29 ? O21 O81 401 A 1 HETATM 36 O O31 O81 . . . B 2 13.912 4.299 18.077 1 30.04 ? O31 O81 401 A 1 HETATM 37 O O41 O81 . . . B 2 14.787 6.627 18.584 1 40.15 ? O41 O81 401 A 1 HETATM 38 P P7 O81 . . . B 2 14.566 8.182 18.892 1 43.47 ? P7 O81 401 A 1 HETATM 39 O O37 O81 . . . B 2 13.874 8.056 20.273 1 35.66 ? O37 O81 401 A 1 HETATM 40 O O47 O81 . . . B 2 15.879 8.941 18.902 1 46.22 ? O47 O81 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 72 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 60 _model_server_stats.element_count 40 #