data_6WOG # _model_server_result.job_id IMDnGJLaUrfT4bTIruf3iQ _model_server_result.datetime_utc '2024-11-25 01:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6wog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WOG # _exptl.entry_id 6WOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 738.042 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Methylenebisphosphonate inositol pentakisphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WOG _cell.length_a 44.802 _cell.length_b 59.544 _cell.length_c 62.526 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H21 O26 P7' _chem_comp.formula_weight 738.042 _chem_comp.id 5A3 _chem_comp.mon_nstd_flag . _chem_comp.name 'Methylenebisphosphonate inositol pentakisphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 PA2 5A3 doub 1 n n O31 PA1 5A3 doub 2 n n O32 PA2 5A3 sing 3 n n PA2 O22 5A3 sing 4 n n PA2 O12 5A3 sing 5 n n O21 PA1 5A3 sing 6 n n PA1 O11 5A3 sing 7 n n PA1 O41 5A3 sing 8 n n O11 C1 5A3 sing 9 n n O12 C2 5A3 sing 10 n n C2 C1 5A3 sing 11 n n C2 C3 5A3 sing 12 n n C1 C6 5A3 sing 13 n n O46 PA6 5A3 doub 14 n n O33 PA3 5A3 doub 15 n n O43 PA3 5A3 sing 16 n n O13 PA3 5A3 sing 17 n n O13 C3 5A3 sing 18 n n PA3 O23 5A3 sing 19 n n C3 C4 5A3 sing 20 n n C6 O16 5A3 sing 21 n n C6 C5 5A3 sing 22 n n PA6 O36 5A3 sing 23 n n PA6 O16 5A3 sing 24 n n PA6 O26 5A3 sing 25 n n C4 C5 5A3 sing 26 n n C4 O14 5A3 sing 27 n n C5 O15 5A3 sing 28 n n O15 PA5 5A3 sing 29 n n O14 PA4 5A3 sing 30 n n O34 PA4 5A3 doub 31 n n O24 PA4 5A3 sing 32 n n PA4 O44 5A3 sing 33 n n PA5 CB5 5A3 sing 34 n n PA5 O25 5A3 doub 35 n n PA5 O35 5A3 sing 36 n n CB5 PB5 5A3 sing 37 n n O55 PB5 5A3 doub 38 n n PB5 O75 5A3 sing 39 n n PB5 O65 5A3 sing 40 n n C2 H1 5A3 sing 41 n n C1 H2 5A3 sing 42 n n C4 H3 5A3 sing 43 n n C5 H4 5A3 sing 44 n n C6 H5 5A3 sing 45 n n C3 H6 5A3 sing 46 n n O75 H7 5A3 sing 47 n n O65 H8 5A3 sing 48 n n CB5 H9 5A3 sing 49 n n CB5 H10 5A3 sing 50 n n O35 H11 5A3 sing 51 n n O36 H12 5A3 sing 52 n n O26 H13 5A3 sing 53 n n O41 H14 5A3 sing 54 n n O21 H15 5A3 sing 55 n n O22 H16 5A3 sing 56 n n O32 H17 5A3 sing 57 n n O43 H18 5A3 sing 58 n n O23 H19 5A3 sing 59 n n O24 H20 5A3 sing 60 n n O44 H21 5A3 sing 61 n n # _atom_sites.entry_id 6WOG _atom_sites.fract_transf_matrix[1][1] 0.02232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5A3 A 1 401 401 5A3 5A3 . C 3 SO4 A 1 402 701 SO4 SO4 . D 4 HOH A 1 501 121 HOH HOH . D 4 HOH A 2 502 119 HOH HOH . D 4 HOH A 3 503 110 HOH HOH . D 4 HOH A 4 504 93 HOH HOH . D 4 HOH A 5 505 48 HOH HOH . D 4 HOH A 6 506 115 HOH HOH . D 4 HOH A 7 507 11 HOH HOH . D 4 HOH A 8 508 107 HOH HOH . D 4 HOH A 9 509 67 HOH HOH . D 4 HOH A 10 510 6 HOH HOH . D 4 HOH A 11 511 79 HOH HOH . D 4 HOH A 12 512 85 HOH HOH . D 4 HOH A 13 513 23 HOH HOH . D 4 HOH A 14 514 45 HOH HOH . D 4 HOH A 15 515 113 HOH HOH . D 4 HOH A 16 516 63 HOH HOH . D 4 HOH A 17 517 77 HOH HOH . D 4 HOH A 18 518 22 HOH HOH . D 4 HOH A 19 519 28 HOH HOH . D 4 HOH A 20 520 78 HOH HOH . D 4 HOH A 21 521 72 HOH HOH . D 4 HOH A 22 522 37 HOH HOH . D 4 HOH A 23 523 24 HOH HOH . D 4 HOH A 24 524 111 HOH HOH . D 4 HOH A 25 525 101 HOH HOH . D 4 HOH A 26 526 64 HOH HOH . D 4 HOH A 27 527 112 HOH HOH . D 4 HOH A 28 528 94 HOH HOH . D 4 HOH A 29 529 104 HOH HOH . D 4 HOH A 30 530 1 HOH HOH . D 4 HOH A 31 531 65 HOH HOH . D 4 HOH A 32 532 76 HOH HOH . D 4 HOH A 33 533 89 HOH HOH . D 4 HOH A 34 534 33 HOH HOH . D 4 HOH A 35 535 106 HOH HOH . D 4 HOH A 36 536 3 HOH HOH . D 4 HOH A 37 537 20 HOH HOH . D 4 HOH A 38 538 19 HOH HOH . D 4 HOH A 39 539 90 HOH HOH . D 4 HOH A 40 540 2 HOH HOH . D 4 HOH A 41 541 51 HOH HOH . D 4 HOH A 42 542 69 HOH HOH . D 4 HOH A 43 543 7 HOH HOH . D 4 HOH A 44 544 58 HOH HOH . D 4 HOH A 45 545 71 HOH HOH . D 4 HOH A 46 546 116 HOH HOH . D 4 HOH A 47 547 108 HOH HOH . D 4 HOH A 48 548 103 HOH HOH . D 4 HOH A 49 549 80 HOH HOH . D 4 HOH A 50 550 26 HOH HOH . D 4 HOH A 51 551 38 HOH HOH . D 4 HOH A 52 552 73 HOH HOH . D 4 HOH A 53 553 9 HOH HOH . D 4 HOH A 54 554 81 HOH HOH . D 4 HOH A 55 555 14 HOH HOH . D 4 HOH A 56 556 10 HOH HOH . D 4 HOH A 57 557 16 HOH HOH . D 4 HOH A 58 558 61 HOH HOH . D 4 HOH A 59 559 97 HOH HOH . D 4 HOH A 60 560 12 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 44 HOH HOH . D 4 HOH A 63 563 15 HOH HOH . D 4 HOH A 64 564 46 HOH HOH . D 4 HOH A 65 565 59 HOH HOH . D 4 HOH A 66 566 54 HOH HOH . D 4 HOH A 67 567 87 HOH HOH . D 4 HOH A 68 568 92 HOH HOH . D 4 HOH A 69 569 42 HOH HOH . D 4 HOH A 70 570 18 HOH HOH . D 4 HOH A 71 571 39 HOH HOH . D 4 HOH A 72 572 8 HOH HOH . D 4 HOH A 73 573 60 HOH HOH . D 4 HOH A 74 574 102 HOH HOH . D 4 HOH A 75 575 91 HOH HOH . D 4 HOH A 76 576 49 HOH HOH . D 4 HOH A 77 577 99 HOH HOH . D 4 HOH A 78 578 75 HOH HOH . D 4 HOH A 79 579 13 HOH HOH . D 4 HOH A 80 580 53 HOH HOH . D 4 HOH A 81 581 17 HOH HOH . D 4 HOH A 82 582 70 HOH HOH . D 4 HOH A 83 583 36 HOH HOH . D 4 HOH A 84 584 27 HOH HOH . D 4 HOH A 85 585 25 HOH HOH . D 4 HOH A 86 586 98 HOH HOH . D 4 HOH A 87 587 47 HOH HOH . D 4 HOH A 88 588 4 HOH HOH . D 4 HOH A 89 589 30 HOH HOH . D 4 HOH A 90 590 114 HOH HOH . D 4 HOH A 91 591 5 HOH HOH . D 4 HOH A 92 592 84 HOH HOH . D 4 HOH A 93 593 31 HOH HOH . D 4 HOH A 94 594 105 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 118 HOH HOH . D 4 HOH A 97 597 68 HOH HOH . D 4 HOH A 98 598 66 HOH HOH . D 4 HOH A 99 599 88 HOH HOH . D 4 HOH A 100 600 21 HOH HOH . D 4 HOH A 101 601 86 HOH HOH . D 4 HOH A 102 602 109 HOH HOH . D 4 HOH A 103 603 41 HOH HOH . D 4 HOH A 104 604 74 HOH HOH . D 4 HOH A 105 605 117 HOH HOH . D 4 HOH A 106 606 40 HOH HOH . D 4 HOH A 107 607 57 HOH HOH . D 4 HOH A 108 608 43 HOH HOH . D 4 HOH A 109 609 29 HOH HOH . D 4 HOH A 110 610 120 HOH HOH . D 4 HOH A 111 611 32 HOH HOH . D 4 HOH A 112 612 96 HOH HOH . D 4 HOH A 113 613 100 HOH HOH . D 4 HOH A 114 614 83 HOH HOH . D 4 HOH A 115 615 82 HOH HOH . D 4 HOH A 116 616 35 HOH HOH . D 4 HOH A 117 617 34 HOH HOH . D 4 HOH A 118 618 52 HOH HOH . D 4 HOH A 119 619 50 HOH HOH . D 4 HOH A 120 620 55 HOH HOH . D 4 HOH A 121 621 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O31 5A3 . . . B 2 21.942 2.75 14.369 1 50.95 ? O31 5A3 401 A 1 HETATM 2 C C2 5A3 . . . B 2 20.193 2.569 9.856 1 30.94 ? C2 5A3 401 A 1 HETATM 3 C C1 5A3 . . . B 2 19.872 2.801 11.321 1 31.42 ? C1 5A3 401 A 1 HETATM 4 C C4 5A3 . . . B 2 18.097 3.795 9.25 1 24.28 ? C4 5A3 401 A 1 HETATM 5 C C5 5A3 . . . B 2 17.811 4.033 10.72 1 25.06 ? C5 5A3 401 A 1 HETATM 6 C C6 5A3 . . . B 2 19.097 4.093 11.515 1 29.59 ? C6 5A3 401 A 1 HETATM 7 C C3 5A3 . . . B 2 18.912 2.534 9.05 1 27.74 ? C3 5A3 401 A 1 HETATM 8 O O11 5A3 . . . B 2 21.121 2.895 12.063 1 36.57 ? O11 5A3 401 A 1 HETATM 9 O O75 5A3 . . . B 2 17.559 8.201 11.762 1 25.09 ? O75 5A3 401 A 1 HETATM 10 P PB5 5A3 . . . B 2 16.131 8.331 12.22 1 22.54 ? PB5 5A3 401 A 1 HETATM 11 O O55 5A3 . . . B 2 15.959 8.044 13.694 1 31.03 ? O55 5A3 401 A 1 HETATM 12 O O65 5A3 . . . B 2 15.546 9.624 11.798 1 24.3 ? O65 5A3 401 A 1 HETATM 13 C CB5 5A3 . . . B 2 15.206 7.101 11.29 1 21.97 ? CB5 5A3 401 A 1 HETATM 14 P PA5 5A3 . . . B 2 15.652 5.34 11.489 1 22.74 ? PA5 5A3 401 A 1 HETATM 15 O O25 5A3 . . . B 2 14.688 4.563 10.658 1 21.91 ? O25 5A3 401 A 1 HETATM 16 O O35 5A3 . . . B 2 15.718 4.928 12.929 1 26.81 ? O35 5A3 401 A 1 HETATM 17 O O15 5A3 . . . B 2 17.108 5.293 10.864 1 25.74 ? O15 5A3 401 A 1 HETATM 18 O O16 5A3 . . . B 2 18.746 4.232 12.927 1 33.43 ? O16 5A3 401 A 1 HETATM 19 P PA6 5A3 . . . B 2 19.133 5.526 13.801 1 36.79 ? PA6 5A3 401 A 1 HETATM 20 O O46 5A3 . . . B 2 20.402 5.159 14.559 1 42.54 ? O46 5A3 401 A 1 HETATM 21 O O36 5A3 . . . B 2 19.338 6.722 12.891 1 37.5 ? O36 5A3 401 A 1 HETATM 22 O O26 5A3 . . . B 2 17.915 5.688 14.699 1 48.17 ? O26 5A3 401 A 1 HETATM 23 P PA1 5A3 . . . B 2 21.468 1.861 13.23 1 42.26 ? PA1 5A3 401 A 1 HETATM 24 O O41 5A3 . . . B 2 20.207 1.084 13.566 1 45.27 ? O41 5A3 401 A 1 HETATM 25 O O21 5A3 . . . B 2 22.572 0.971 12.701 1 51.09 ? O21 5A3 401 A 1 HETATM 26 O O12 5A3 . . . B 2 21.005 3.681 9.365 1 35.01 ? O12 5A3 401 A 1 HETATM 27 P PA2 5A3 . . . B 2 22.503 3.511 8.776 1 42.84 ? PA2 5A3 401 A 1 HETATM 28 O O42 5A3 . . . B 2 22.416 2.864 7.408 1 45.49 ? O42 5A3 401 A 1 HETATM 29 O O22 5A3 . . . B 2 23.015 4.943 8.695 1 47.21 ? O22 5A3 401 A 1 HETATM 30 O O32 5A3 . . . B 2 23.294 2.675 9.764 1 49.79 ? O32 5A3 401 A 1 HETATM 31 O O13 5A3 . . . B 2 19.228 2.446 7.631 1 30.02 ? O13 5A3 401 A 1 HETATM 32 P PA3 5A3 . . . B 2 19.544 1.06 6.913 1 35.94 ? PA3 5A3 401 A 1 HETATM 33 O O43 5A3 . . . B 2 21.062 0.998 6.827 1 43.08 ? O43 5A3 401 A 1 HETATM 34 O O33 5A3 . . . B 2 18.961 -0.064 7.75 1 43.97 ? O33 5A3 401 A 1 HETATM 35 O O23 5A3 . . . B 2 18.883 1.161 5.552 1 45.39 ? O23 5A3 401 A 1 HETATM 36 O O14 5A3 . . . B 2 16.826 3.557 8.595 1 22.39 ? O14 5A3 401 A 1 HETATM 37 P PA4 5A3 . . . B 2 16.158 4.503 7.507 1 20.2 ? PA4 5A3 401 A 1 HETATM 38 O O24 5A3 . . . B 2 14.894 5.079 8.177 1 19.14 ? O24 5A3 401 A 1 HETATM 39 O O44 5A3 . . . B 2 17.123 5.637 7.121 1 20.89 ? O44 5A3 401 A 1 HETATM 40 O O34 5A3 . . . B 2 15.802 3.585 6.325 1 21.63 ? O34 5A3 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #