data_6WOH # _model_server_result.job_id gsV8CNMSsUZqvuir8AiYHw _model_server_result.datetime_utc '2024-11-16 23:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6woh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6WOH # _exptl.entry_id 6WOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 816.049 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6WOH _cell.length_a 45.537 _cell.length_b 59.904 _cell.length_c 62.653 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H24 O28 P8' _chem_comp.formula_weight 816.049 _chem_comp.id 4WZ _chem_comp.mon_nstd_flag . _chem_comp.name '{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 PA2 4WZ doub 1 n n O71 PB1 4WZ doub 2 n n O42 PA2 4WZ sing 3 n n O22 PA2 4WZ sing 4 n n PA2 O12 4WZ sing 5 n n O51 PB1 4WZ sing 6 n n CB1 PB1 4WZ sing 7 n n CB1 PA1 4WZ sing 8 n n PB1 O61 4WZ sing 9 n n O31 PA1 4WZ doub 10 n n PA1 O11 4WZ sing 11 n n PA1 O21 4WZ sing 12 n n O12 C2 4WZ sing 13 n n O11 C1 4WZ sing 14 n n O36 PA6 4WZ doub 15 n n C2 C1 4WZ sing 16 n n C2 C3 4WZ sing 17 n n C1 C6 4WZ sing 18 n n O43 PA3 4WZ doub 19 n n O33 PA3 4WZ sing 20 n n O46 PA6 4WZ sing 21 n n O13 PA3 4WZ sing 22 n n O13 C3 4WZ sing 23 n n PA6 O16 4WZ sing 24 n n PA6 O26 4WZ sing 25 n n PA3 O23 4WZ sing 26 n n C3 C4 4WZ sing 27 n n C6 O16 4WZ sing 28 n n C6 C5 4WZ sing 29 n n C4 C5 4WZ sing 30 n n C4 O14 4WZ sing 31 n n C5 O15 4WZ sing 32 n n O15 PA5 4WZ sing 33 n n O34 PA4 4WZ doub 34 n n O14 PA4 4WZ sing 35 n n O24 PA4 4WZ sing 36 n n PA4 O44 4WZ sing 37 n n O35 PA5 4WZ doub 38 n n PA5 O25 4WZ sing 39 n n PA5 CB5 4WZ sing 40 n n CB5 PB5 4WZ sing 41 n n O55 PB5 4WZ doub 42 n n PB5 O75 4WZ sing 43 n n PB5 O65 4WZ sing 44 n n C1 H1 4WZ sing 45 n n C2 H2 4WZ sing 46 n n C3 H3 4WZ sing 47 n n C4 H4 4WZ sing 48 n n C5 H5 4WZ sing 49 n n C6 H6 4WZ sing 50 n n O65 H7 4WZ sing 51 n n O75 H8 4WZ sing 52 n n CB5 H9 4WZ sing 53 n n CB5 H10 4WZ sing 54 n n O25 H11 4WZ sing 55 n n O46 H12 4WZ sing 56 n n O26 H13 4WZ sing 57 n n O24 H14 4WZ sing 58 n n O44 H15 4WZ sing 59 n n O33 H16 4WZ sing 60 n n O23 H17 4WZ sing 61 n n O42 H18 4WZ sing 62 n n O22 H19 4WZ sing 63 n n O21 H20 4WZ sing 64 n n CB1 H21 4WZ sing 65 n n CB1 H22 4WZ sing 66 n n O61 H23 4WZ sing 67 n n O51 H24 4WZ sing 68 n n # _atom_sites.entry_id 6WOH _atom_sites.fract_transf_matrix[1][1] 0.02196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4WZ A 1 401 401 4WZ 4WZ . C 3 SO4 A 1 402 701 SO4 SO4 . D 3 SO4 A 1 403 702 SO4 SO4 . E 4 HOH A 1 501 110 HOH HOH . E 4 HOH A 2 502 97 HOH HOH . E 4 HOH A 3 503 46 HOH HOH . E 4 HOH A 4 504 108 HOH HOH . E 4 HOH A 5 505 24 HOH HOH . E 4 HOH A 6 506 70 HOH HOH . E 4 HOH A 7 507 84 HOH HOH . E 4 HOH A 8 508 26 HOH HOH . E 4 HOH A 9 509 88 HOH HOH . E 4 HOH A 10 510 12 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 6 HOH HOH . E 4 HOH A 13 513 111 HOH HOH . E 4 HOH A 14 514 104 HOH HOH . E 4 HOH A 15 515 60 HOH HOH . E 4 HOH A 16 516 32 HOH HOH . E 4 HOH A 17 517 47 HOH HOH . E 4 HOH A 18 518 66 HOH HOH . E 4 HOH A 19 519 37 HOH HOH . E 4 HOH A 20 520 91 HOH HOH . E 4 HOH A 21 521 2 HOH HOH . E 4 HOH A 22 522 55 HOH HOH . E 4 HOH A 23 523 65 HOH HOH . E 4 HOH A 24 524 1 HOH HOH . E 4 HOH A 25 525 7 HOH HOH . E 4 HOH A 26 526 3 HOH HOH . E 4 HOH A 27 527 63 HOH HOH . E 4 HOH A 28 528 58 HOH HOH . E 4 HOH A 29 529 71 HOH HOH . E 4 HOH A 30 530 28 HOH HOH . E 4 HOH A 31 531 83 HOH HOH . E 4 HOH A 32 532 109 HOH HOH . E 4 HOH A 33 533 42 HOH HOH . E 4 HOH A 34 534 106 HOH HOH . E 4 HOH A 35 535 96 HOH HOH . E 4 HOH A 36 536 89 HOH HOH . E 4 HOH A 37 537 23 HOH HOH . E 4 HOH A 38 538 90 HOH HOH . E 4 HOH A 39 539 92 HOH HOH . E 4 HOH A 40 540 102 HOH HOH . E 4 HOH A 41 541 98 HOH HOH . E 4 HOH A 42 542 36 HOH HOH . E 4 HOH A 43 543 9 HOH HOH . E 4 HOH A 44 544 13 HOH HOH . E 4 HOH A 45 545 15 HOH HOH . E 4 HOH A 46 546 43 HOH HOH . E 4 HOH A 47 547 62 HOH HOH . E 4 HOH A 48 548 21 HOH HOH . E 4 HOH A 49 549 101 HOH HOH . E 4 HOH A 50 550 20 HOH HOH . E 4 HOH A 51 551 18 HOH HOH . E 4 HOH A 52 552 73 HOH HOH . E 4 HOH A 53 553 57 HOH HOH . E 4 HOH A 54 554 103 HOH HOH . E 4 HOH A 55 555 78 HOH HOH . E 4 HOH A 56 556 17 HOH HOH . E 4 HOH A 57 557 10 HOH HOH . E 4 HOH A 58 558 44 HOH HOH . E 4 HOH A 59 559 51 HOH HOH . E 4 HOH A 60 560 74 HOH HOH . E 4 HOH A 61 561 29 HOH HOH . E 4 HOH A 62 562 54 HOH HOH . E 4 HOH A 63 563 93 HOH HOH . E 4 HOH A 64 564 68 HOH HOH . E 4 HOH A 65 565 4 HOH HOH . E 4 HOH A 66 566 16 HOH HOH . E 4 HOH A 67 567 48 HOH HOH . E 4 HOH A 68 568 27 HOH HOH . E 4 HOH A 69 569 50 HOH HOH . E 4 HOH A 70 570 14 HOH HOH . E 4 HOH A 71 571 8 HOH HOH . E 4 HOH A 72 572 49 HOH HOH . E 4 HOH A 73 573 19 HOH HOH . E 4 HOH A 74 574 5 HOH HOH . E 4 HOH A 75 575 25 HOH HOH . E 4 HOH A 76 576 95 HOH HOH . E 4 HOH A 77 577 61 HOH HOH . E 4 HOH A 78 578 40 HOH HOH . E 4 HOH A 79 579 94 HOH HOH . E 4 HOH A 80 580 30 HOH HOH . E 4 HOH A 81 581 41 HOH HOH . E 4 HOH A 82 582 35 HOH HOH . E 4 HOH A 83 583 67 HOH HOH . E 4 HOH A 84 584 81 HOH HOH . E 4 HOH A 85 585 99 HOH HOH . E 4 HOH A 86 586 22 HOH HOH . E 4 HOH A 87 587 75 HOH HOH . E 4 HOH A 88 588 100 HOH HOH . E 4 HOH A 89 589 76 HOH HOH . E 4 HOH A 90 590 80 HOH HOH . E 4 HOH A 91 591 56 HOH HOH . E 4 HOH A 92 592 45 HOH HOH . E 4 HOH A 93 593 59 HOH HOH . E 4 HOH A 94 594 77 HOH HOH . E 4 HOH A 95 595 53 HOH HOH . E 4 HOH A 96 596 39 HOH HOH . E 4 HOH A 97 597 85 HOH HOH . E 4 HOH A 98 598 86 HOH HOH . E 4 HOH A 99 599 79 HOH HOH . E 4 HOH A 100 600 64 HOH HOH . E 4 HOH A 101 601 105 HOH HOH . E 4 HOH A 102 602 38 HOH HOH . E 4 HOH A 103 603 72 HOH HOH . E 4 HOH A 104 604 31 HOH HOH . E 4 HOH A 105 605 34 HOH HOH . E 4 HOH A 106 606 87 HOH HOH . E 4 HOH A 107 607 107 HOH HOH . E 4 HOH A 108 608 33 HOH HOH . E 4 HOH A 109 609 82 HOH HOH . E 4 HOH A 110 610 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4WZ . . . B 2 20.183 2.701 11.169 1 39.43 ? C1 4WZ 401 A 1 HETATM 2 C C2 4WZ . . . B 2 20.504 2.423 9.688 1 38.83 ? C2 4WZ 401 A 1 HETATM 3 C C3 4WZ . . . B 2 19.202 2.408 8.891 1 36.31 ? C3 4WZ 401 A 1 HETATM 4 C C4 4WZ . . . B 2 18.394 3.718 9.12 1 32.63 ? C4 4WZ 401 A 1 HETATM 5 C C5 4WZ . . . B 2 18.153 3.969 10.58 1 31.22 ? C5 4WZ 401 A 1 HETATM 6 C C6 4WZ . . . B 2 19.456 4.042 11.328 1 33.89 ? C6 4WZ 401 A 1 HETATM 7 O O55 4WZ . . . B 2 17.859 7.983 11.368 1 29.33 ? O55 4WZ 401 A 1 HETATM 8 P PB5 4WZ . . . B 2 16.481 8.14 12.147 1 28.35 ? PB5 4WZ 401 A 1 HETATM 9 O O65 4WZ . . . B 2 16.347 7.637 13.604 1 29.34 ? O65 4WZ 401 A 1 HETATM 10 O O75 4WZ . . . B 2 15.626 9.307 11.753 1 30.26 ? O75 4WZ 401 A 1 HETATM 11 C CB5 4WZ . . . B 2 15.439 6.931 11.248 1 26.41 ? CB5 4WZ 401 A 1 HETATM 12 P PA5 4WZ . . . B 2 15.972 5.199 11.478 1 26.8 ? PA5 4WZ 401 A 1 HETATM 13 O O25 4WZ . . . B 2 14.981 4.363 10.716 1 27.5 ? O25 4WZ 401 A 1 HETATM 14 O O35 4WZ . . . B 2 16.276 4.848 12.968 1 29.54 ? O35 4WZ 401 A 1 HETATM 15 O O15 4WZ . . . B 2 17.424 5.195 10.696 1 28.45 ? O15 4WZ 401 A 1 HETATM 16 O O16 4WZ . . . B 2 19.171 4.239 12.685 1 32.28 ? O16 4WZ 401 A 1 HETATM 17 P PA6 4WZ . . . B 2 19.573 5.557 13.513 1 34.81 ? PA6 4WZ 401 A 1 HETATM 18 O O46 4WZ . . . B 2 18.428 5.688 14.495 1 30.43 ? O46 4WZ 401 A 1 HETATM 19 O O36 4WZ . . . B 2 20.989 5.114 14.128 1 34.74 ? O36 4WZ 401 A 1 HETATM 20 O O26 4WZ . . . B 2 19.714 6.715 12.488 1 35.19 ? O26 4WZ 401 A 1 HETATM 21 O O14 4WZ . . . B 2 17.11 3.514 8.544 1 28.28 ? O14 4WZ 401 A 1 HETATM 22 P PA4 4WZ . . . B 2 16.38 4.429 7.497 1 26.74 ? PA4 4WZ 401 A 1 HETATM 23 O O24 4WZ . . . B 2 15.145 4.896 8.39 1 24.12 ? O24 4WZ 401 A 1 HETATM 24 O O44 4WZ . . . B 2 17.386 5.533 7.191 1 26.86 ? O44 4WZ 401 A 1 HETATM 25 O O34 4WZ . . . B 2 16.087 3.424 6.292 1 27.15 ? O34 4WZ 401 A 1 HETATM 26 O O13 4WZ . . . B 2 19.48 2.298 7.469 1 39.14 ? O13 4WZ 401 A 1 HETATM 27 P PA3 4WZ . . . B 2 19.825 0.894 6.754 1 41.88 ? PA3 4WZ 401 A 1 HETATM 28 O O43 4WZ . . . B 2 19.165 -0.111 7.627 1 42.29 ? O43 4WZ 401 A 1 HETATM 29 O O33 4WZ . . . B 2 19.203 0.984 5.311 1 42.4 ? O33 4WZ 401 A 1 HETATM 30 O O23 4WZ . . . B 2 21.388 0.954 6.757 1 45.43 ? O23 4WZ 401 A 1 HETATM 31 O O12 4WZ . . . B 2 21.359 3.454 9.169 1 44.98 ? O12 4WZ 401 A 1 HETATM 32 P PA2 4WZ . . . B 2 22.87 3.186 8.666 1 51.59 ? PA2 4WZ 401 A 1 HETATM 33 O O42 4WZ . . . B 2 22.76 2.926 7.209 1 48.76 ? O42 4WZ 401 A 1 HETATM 34 O O22 4WZ . . . B 2 23.502 4.594 9.041 1 52.52 ? O22 4WZ 401 A 1 HETATM 35 O O32 4WZ . . . B 2 23.405 1.991 9.537 1 50.6 ? O32 4WZ 401 A 1 HETATM 36 O O11 4WZ . . . B 2 21.4 2.738 11.95 1 47.39 ? O11 4WZ 401 A 1 HETATM 37 P PA1 4WZ . . . B 2 21.617 1.775 13.213 1 53.48 ? PA1 4WZ 401 A 1 HETATM 38 O O21 4WZ . . . B 2 22.201 2.597 14.33 1 55.42 ? O21 4WZ 401 A 1 HETATM 39 O O31 4WZ . . . B 2 20.333 0.901 13.496 1 52.34 ? O31 4WZ 401 A 1 HETATM 40 C CB1 4WZ . . . B 2 22.904 0.714 12.508 1 63.25 ? CB1 4WZ 401 A 1 HETATM 41 P PB1 4WZ . . . B 2 24.516 1.494 12.683 1 73.57 ? PB1 4WZ 401 A 1 HETATM 42 O O61 4WZ . . . B 2 24.845 1.318 14.205 1 75.31 ? O61 4WZ 401 A 1 HETATM 43 O O71 4WZ . . . B 2 24.258 2.919 12.283 1 71.49 ? O71 4WZ 401 A 1 HETATM 44 O O51 4WZ . . . B 2 25.418 0.713 11.668 1 74.3 ? O51 4WZ 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #