data_6WP0
#
_model_server_result.job_id            NMdPUNiiCAYsckpB-tw50Q 
_model_server_result.datetime_utc      '2024-11-07 08:45:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":204}' 
#
_entry.id    6WP0 
#
_exptl.entry_id    6WP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.89 
_cell.angle_gamma         90 
_cell.entry_id            6WP0 
_cell.length_a            84.565 
_cell.length_b            111.272 
_cell.length_c            101.826 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,K,M,N,O,P,FA,GA,JA,RA,TA 1 1 
B,J,L,Q,R,S,T,AA,BA,CA,DA,EA,HA,IA,KA,SA,UA 2 1 
C,E,G,W,X,Y,LA,NA,PA 3 1 
D,F,H,U,V,Z,MA,OA,QA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     6WP0 
_atom_sites.fract_transf_matrix[1][1]    0.011825 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004993 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008987 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01066 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 GOL A 1 201 20 GOL GOL . 
N 2 GOL A 1 202 22 GOL GOL . 
O 2 GOL A 1 203 25 GOL GOL . 
P 2 GOL A 1 204 26 GOL GOL . 
Q 2 GOL B 1 201 10 GOL GOL . 
R 2 GOL B 1 202 11 GOL GOL . 
S 2 GOL B 1 203 27 GOL GOL . 
T 2 GOL B 1 204 29 GOL GOL . 
U 3 ACT D 1 201 6 ACT ACT . 
V 2 GOL D 1 202 13 GOL GOL . 
W 2 GOL E 1 201 6 GOL GOL . 
X 2 GOL E 1 202 21 GOL GOL . 
Y 2 GOL G 1 201 2 GOL GOL . 
Z 2 GOL H 1 201 19 GOL GOL . 
AA 3 ACT J 1 201 1 ACT ACT . 
BA 2 GOL J 1 202 5 GOL GOL . 
CA 2 GOL J 1 203 7 GOL GOL . 
DA 2 GOL J 1 204 8 GOL GOL . 
EA 2 GOL J 1 205 9 GOL GOL . 
FA 2 GOL K 1 201 16 GOL GOL . 
GA 2 GOL K 1 202 24 GOL GOL . 
HA 2 GOL L 1 201 12 GOL GOL . 
IA 2 GOL L 1 202 28 GOL GOL . 
JA 4 HOH A 1 301 137 HOH HOH . 
JA 4 HOH A 2 302 9 HOH HOH . 
JA 4 HOH A 3 303 134 HOH HOH . 
JA 4 HOH A 4 304 132 HOH HOH . 
JA 4 HOH A 5 305 136 HOH HOH . 
JA 4 HOH A 6 306 138 HOH HOH . 
KA 4 HOH B 1 301 28 HOH HOH . 
KA 4 HOH B 2 302 13 HOH HOH . 
KA 4 HOH B 3 303 44 HOH HOH . 
KA 4 HOH B 4 304 41 HOH HOH . 
KA 4 HOH B 5 305 30 HOH HOH . 
KA 4 HOH B 6 306 31 HOH HOH . 
LA 4 HOH C 1 201 62 HOH HOH . 
LA 4 HOH C 2 202 66 HOH HOH . 
LA 4 HOH C 3 203 64 HOH HOH . 
LA 4 HOH C 4 204 139 HOH HOH . 
LA 4 HOH C 5 205 49 HOH HOH . 
LA 4 HOH C 6 206 68 HOH HOH . 
MA 4 HOH D 1 301 69 HOH HOH . 
NA 4 HOH E 1 301 140 HOH HOH . 
NA 4 HOH E 2 302 87 HOH HOH . 
NA 4 HOH E 3 303 143 HOH HOH . 
NA 4 HOH E 4 304 141 HOH HOH . 
NA 4 HOH E 5 305 142 HOH HOH . 
NA 4 HOH E 6 306 144 HOH HOH . 
NA 4 HOH E 7 307 83 HOH HOH . 
OA 4 HOH F 1 201 131 HOH HOH . 
OA 4 HOH F 2 202 129 HOH HOH . 
OA 4 HOH F 3 203 81 HOH HOH . 
OA 4 HOH F 4 204 57 HOH HOH . 
OA 4 HOH F 5 205 95 HOH HOH . 
OA 4 HOH F 6 206 58 HOH HOH . 
OA 4 HOH F 7 207 77 HOH HOH . 
OA 4 HOH F 8 208 130 HOH HOH . 
PA 4 HOH G 1 301 97 HOH HOH . 
PA 4 HOH G 2 302 59 HOH HOH . 
PA 4 HOH G 3 303 60 HOH HOH . 
QA 4 HOH H 1 301 94 HOH HOH . 
QA 4 HOH H 2 302 115 HOH HOH . 
RA 4 HOH I 1 201 26 HOH HOH . 
RA 4 HOH I 2 202 145 HOH HOH . 
RA 4 HOH I 3 203 133 HOH HOH . 
RA 4 HOH I 4 204 111 HOH HOH . 
RA 4 HOH I 5 205 18 HOH HOH . 
RA 4 HOH I 6 206 135 HOH HOH . 
RA 4 HOH I 7 207 110 HOH HOH . 
SA 4 HOH J 1 301 118 HOH HOH . 
SA 4 HOH J 2 302 146 HOH HOH . 
SA 4 HOH J 3 303 148 HOH HOH . 
SA 4 HOH J 4 304 45 HOH HOH . 
SA 4 HOH J 5 305 40 HOH HOH . 
SA 4 HOH J 6 306 147 HOH HOH . 
SA 4 HOH J 7 307 98 HOH HOH . 
TA 4 HOH K 1 301 121 HOH HOH . 
TA 4 HOH K 2 302 104 HOH HOH . 
TA 4 HOH K 3 303 106 HOH HOH . 
TA 4 HOH K 4 304 107 HOH HOH . 
UA 4 HOH L 1 301 127 HOH HOH . 
UA 4 HOH L 2 302 126 HOH HOH . 
UA 4 HOH L 3 303 114 HOH HOH . 
UA 4 HOH L 4 304 113 HOH HOH . 
UA 4 HOH L 5 305 96 HOH HOH . 
UA 4 HOH L 6 306 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . T 2 39.456 10.204 -24.654 1 70.76 ? C1 GOL 204 B 1 
HETATM 2 O O1 GOL . . . T 2 40.739 10.457 -24.174 1 71.3 ? O1 GOL 204 B 1 
HETATM 3 C C2 GOL . . . T 2 39.026 11.447 -25.467 1 74.38 ? C2 GOL 204 B 1 
HETATM 4 O O2 GOL . . . T 2 39.761 12.572 -25.123 1 62.84 ? O2 GOL 204 B 1 
HETATM 5 C C3 GOL . . . T 2 37.521 11.619 -25.157 1 90.07 ? C3 GOL 204 B 1 
HETATM 6 O O3 GOL . . . T 2 36.884 10.463 -25.604 1 97.64 ? O3 GOL 204 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#