data_6WP2
#
_model_server_result.job_id            VFCXH-FYoNpAe8P2rFtG1w 
_model_server_result.datetime_utc      '2024-11-17 07:46:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6wp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":207}' 
#
_entry.id    6WP2 
#
_exptl.entry_id    6WP2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6WP2 
_cell.length_a            60.513 
_cell.length_b            74.451 
_cell.length_c            94.345 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6WP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 57 A HIS 57 1_555 D ZN ZN . A ZN 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc2 A NE2 HIS 57 A HIS 57 1_555 D ZN ZN . A ZN 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc3 A NE2 HIS 57 A HIS 57 1_555 F ZN ZN . A ZN 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc4 A NE2 HIS 57 A HIS 57 1_555 F ZN ZN . A ZN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.879 ? 
metalc ? metalc5 D ZN ZN . A ZN 201 1_555 B NE2 HIS 57 B HIS 57 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc6 D ZN ZN . A ZN 201 1_555 B NE2 HIS 57 B HIS 57 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc7 D ZN ZN . A ZN 201 1_555 C NE2 HIS 57 C HIS 57 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc8 D ZN ZN . A ZN 201 1_555 C NE2 HIS 57 C HIS 57 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc9 F ZN ZN . A ZN 203 1_555 B NE2 HIS 57 B HIS 57 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc10 F ZN ZN . A ZN 203 1_555 B NE2 HIS 57 B HIS 57 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.768 ? 
metalc ? metalc11 F ZN ZN . A ZN 203 1_555 C NE2 HIS 57 C HIS 57 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc12 F ZN ZN . A ZN 203 1_555 C NE2 HIS 57 C HIS 57 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc13 K O1 GOL . B GOL 201 1_555 M ZN ZN . C ZN 201 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc14 K O2 GOL . B GOL 201 1_555 M ZN ZN . C ZN 201 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     6WP2 
_atom_sites.fract_transf_matrix[1][1]    0.016525 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013432 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 1 ZN ZN . 
E 2 ZN A 1 202 3 ZN ZN . 
F 2 ZN A 1 203 4 ZN ZN . 
G 2 ZN A 1 204 5 ZN ZN . 
H 2 ZN A 1 205 6 ZN ZN . 
I 3 GOL A 1 206 4 GOL GOL . 
J 3 GOL A 1 207 8 GOL GOL . 
K 3 GOL B 1 201 1 GOL GOL . 
L 3 GOL B 1 202 7 GOL GOL . 
M 2 ZN C 1 201 2 ZN ZN . 
N 3 GOL C 1 202 6 GOL GOL . 
O 4 ACT C 1 203 9 ACT ACT . 
P 5 HOH A 1 301 6 HOH HOH . 
P 5 HOH A 2 302 10 HOH HOH . 
P 5 HOH A 3 303 1 HOH HOH . 
P 5 HOH A 4 304 5 HOH HOH . 
P 5 HOH A 5 305 17 HOH HOH . 
Q 5 HOH B 1 301 9 HOH HOH . 
Q 5 HOH B 2 302 11 HOH HOH . 
R 5 HOH C 1 301 13 HOH HOH . 
R 5 HOH C 2 302 4 HOH HOH . 
R 5 HOH C 3 303 19 HOH HOH . 
R 5 HOH C 4 304 14 HOH HOH . 
R 5 HOH C 5 305 12 HOH HOH . 
R 5 HOH C 6 306 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 3.579 18.124 -20.862 1 87.2 ? C1 GOL 207 A 1 
HETATM 2 O O1 GOL . . . J 3 2.787 17.187 -20.191 1 79.51 ? O1 GOL 207 A 1 
HETATM 3 C C2 GOL . . . J 3 3.21 18.064 -22.377 1 91.69 ? C2 GOL 207 A 1 
HETATM 4 O O2 GOL . . . J 3 3.065 16.749 -22.832 1 86.58 ? O2 GOL 207 A 1 
HETATM 5 C C3 GOL . . . J 3 4.37 18.815 -23.106 1 80.92 ? C3 GOL 207 A 1 
HETATM 6 O O3 GOL . . . J 3 4.518 20.066 -22.503 1 82.88 ? O3 GOL 207 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#